Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04495 and HGI48_RS04500 are separated by 370 nucleotides HGI48_RS04500 and HGI48_RS04505 are separated by 463 nucleotides
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
HGI48_RS04500: HGI48_RS04500 - fumarate hydratase, at 943,443 to 945,086
_RS04500
HGI48_RS04505: HGI48_RS04505 - LysR family transcriptional regulator, at 945,550 to 946,416
_RS04505
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 942.494 kb on - strand, within HGI48_RS04495 at 942.516 kb on + strand, within HGI48_RS04495 at 942.540 kb on + strand, within HGI48_RS04495 at 942.541 kb on - strand, within HGI48_RS04495 at 942.947 kb on + strand at 942.948 kb on - strand at 942.964 kb on + strand at 943.024 kb on - strand at 943.027 kb on + strand at 943.066 kb on - strand at 943.097 kb on + strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.117 kb on + strand at 943.118 kb on - strand at 943.118 kb on - strand at 943.372 kb on + strand at 943.396 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.550 kb on + strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.662 kb on - strand, within HGI48_RS04500 at 943.662 kb on - strand, within HGI48_RS04500 at 943.747 kb on + strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.825 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.829 kb on - strand at 943.849 kb on + strand, within HGI48_RS04500 at 943.850 kb on - strand, within HGI48_RS04500 at 944.011 kb on - strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.209 kb on + strand, within HGI48_RS04500 at 944.210 kb on - strand, within HGI48_RS04500 at 944.210 kb on - strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.330 kb on - strand, within HGI48_RS04500 at 944.332 kb on + strand, within HGI48_RS04500 at 944.332 kb on + strand, within HGI48_RS04500 at 944.333 kb on - strand, within HGI48_RS04500 at 944.455 kb on + strand at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.500 kb on + strand at 944.500 kb on + strand, within HGI48_RS04500 at 944.506 kb on + strand at 944.506 kb on + strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.554 kb on + strand, within HGI48_RS04500 at 944.555 kb on - strand, within HGI48_RS04500 at 944.555 kb on - strand, within HGI48_RS04500 at 944.576 kb on - strand, within HGI48_RS04500 at 944.583 kb on + strand, within HGI48_RS04500 at 944.584 kb on - strand, within HGI48_RS04500 at 944.584 kb on - strand, within HGI48_RS04500 at 944.584 kb on - strand at 944.622 kb on - strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand at 944.623 kb on + strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand at 944.624 kb on - strand, within HGI48_RS04500 at 944.650 kb on + strand, within HGI48_RS04500 at 944.680 kb on + strand, within HGI48_RS04500 at 944.680 kb on + strand, within HGI48_RS04500 at 944.681 kb on - strand at 944.695 kb on - strand, within HGI48_RS04500 at 944.810 kb on + strand at 944.810 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.966 kb on + strand at 944.967 kb on - strand at 944.967 kb on - strand at 944.967 kb on - strand at 944.972 kb on + strand at 945.019 kb on - strand at 945.067 kb on + strand at 945.067 kb on + strand at 945.068 kb on - strand at 945.110 kb on - strand at 945.110 kb on - strand at 945.143 kb on + strand at 945.163 kb on + strand at 945.163 kb on + strand at 945.164 kb on - strand at 945.164 kb on - strand at 945.164 kb on - strand at 945.235 kb on - strand at 945.248 kb on + strand at 945.248 kb on + strand at 945.299 kb on + strand at 945.300 kb on - strand at 945.300 kb on - strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.303 kb on - strand at 945.303 kb on - strand at 945.303 kb on - strand at 945.322 kb on + strand at 945.323 kb on - strand at 945.344 kb on - strand at 945.375 kb on + strand at 945.375 kb on + strand at 945.375 kb on + strand at 945.376 kb on - strand at 945.377 kb on + strand at 945.378 kb on - strand at 945.399 kb on + strand at 945.399 kb on + strand at 945.400 kb on - strand at 945.435 kb on + strand at 945.435 kb on + strand at 945.458 kb on - strand at 945.488 kb on + strand at 945.492 kb on + strand at 945.493 kb on - strand at 945.496 kb on + strand at 945.503 kb on + strand at 945.503 kb on + strand at 945.504 kb on - strand at 945.551 kb on + strand at 945.689 kb on + strand, within HGI48_RS04505 at 945.690 kb on - strand, within HGI48_RS04505 at 945.718 kb on - strand, within HGI48_RS04505 at 945.761 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.816 kb on - strand, within HGI48_RS04505 at 945.816 kb on - strand at 945.902 kb on + strand, within HGI48_RS04505 at 945.903 kb on - strand, within HGI48_RS04505 at 945.903 kb on - strand at 945.903 kb on - strand at 945.952 kb on - strand, within HGI48_RS04505 at 946.013 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 942,494 - HGI48_RS04495 0.62 +0.2 942,516 + HGI48_RS04495 0.64 -2.2 942,540 + HGI48_RS04495 0.65 -0.6 942,541 - HGI48_RS04495 0.65 +0.2 942,947 + -0.2 942,948 - -0.6 942,964 + -0.2 943,024 - -0.5 943,027 + -2.4 943,066 - +0.1 943,097 + +0.4 943,098 - -0.2 943,098 - +0.2 943,098 - +0.8 943,117 + -0.8 943,118 - -1.0 943,118 - -0.2 943,372 + -0.3 943,396 - +0.2 943,401 + -0.2 943,401 + +0.1 943,418 + -0.5 943,418 + +0.5 943,418 + +0.5 943,418 + -0.8 943,419 - -0.6 943,419 - -0.8 943,419 - -1.5 943,419 - -1.2 943,419 - -0.9 943,550 + -1.4 943,551 - +0.1 943,551 - -1.3 943,551 - +0.4 943,551 - -1.4 943,551 - +0.2 943,662 - HGI48_RS04500 0.13 -0.1 943,662 - HGI48_RS04500 0.13 -0.2 943,747 + HGI48_RS04500 0.18 -0.2 943,748 - HGI48_RS04500 0.19 -1.2 943,748 - HGI48_RS04500 0.19 +0.0 943,748 - HGI48_RS04500 0.19 -0.9 943,825 + HGI48_RS04500 0.23 -1.8 943,828 + HGI48_RS04500 0.23 -1.2 943,828 + HGI48_RS04500 0.23 -0.2 943,829 - -0.8 943,849 + HGI48_RS04500 0.25 +0.3 943,850 - HGI48_RS04500 0.25 -0.4 944,011 - HGI48_RS04500 0.35 -1.5 944,053 + -0.2 944,053 + HGI48_RS04500 0.37 -1.4 944,053 + +0.8 944,053 + HGI48_RS04500 0.37 -1.8 944,054 - HGI48_RS04500 0.37 -1.5 944,054 - HGI48_RS04500 0.37 +1.3 944,054 - HGI48_RS04500 0.37 -1.6 944,209 + HGI48_RS04500 0.47 -0.9 944,210 - HGI48_RS04500 0.47 -2.0 944,210 - HGI48_RS04500 0.47 +0.2 944,329 + HGI48_RS04500 0.54 -1.0 944,329 + HGI48_RS04500 0.54 -1.2 944,329 + HGI48_RS04500 0.54 -0.4 944,329 + HGI48_RS04500 0.54 -0.1 944,330 - HGI48_RS04500 0.54 -1.2 944,332 + HGI48_RS04500 0.54 -1.8 944,332 + HGI48_RS04500 0.54 -0.2 944,333 - HGI48_RS04500 0.54 -2.0 944,455 + +0.8 944,456 - HGI48_RS04500 0.62 -1.1 944,456 - HGI48_RS04500 0.62 -0.8 944,456 - HGI48_RS04500 0.62 -0.5 944,456 - HGI48_RS04500 0.62 +0.2 944,500 + -0.8 944,500 + HGI48_RS04500 0.64 -1.8 944,506 + +0.2 944,506 + HGI48_RS04500 0.65 -0.2 944,507 - HGI48_RS04500 0.65 -0.0 944,507 - HGI48_RS04500 0.65 -0.5 944,507 - HGI48_RS04500 0.65 +0.8 944,507 - HGI48_RS04500 0.65 -1.3 944,507 - HGI48_RS04500 0.65 +1.1 944,554 + HGI48_RS04500 0.68 -0.4 944,555 - HGI48_RS04500 0.68 -1.1 944,555 - HGI48_RS04500 0.68 -1.3 944,576 - HGI48_RS04500 0.69 -1.7 944,583 + HGI48_RS04500 0.69 -0.4 944,584 - HGI48_RS04500 0.69 -1.7 944,584 - HGI48_RS04500 0.69 -1.3 944,584 - +0.2 944,622 - HGI48_RS04500 0.72 +0.4 944,623 + HGI48_RS04500 0.72 +0.9 944,623 + HGI48_RS04500 0.72 -0.4 944,623 + -0.8 944,623 + HGI48_RS04500 0.72 -0.2 944,623 + HGI48_RS04500 0.72 -0.5 944,623 + HGI48_RS04500 0.72 -0.2 944,623 + HGI48_RS04500 0.72 +1.3 944,623 + HGI48_RS04500 0.72 -1.5 944,623 + HGI48_RS04500 0.72 -2.0 944,623 + +1.8 944,623 + HGI48_RS04500 0.72 +1.1 944,624 - HGI48_RS04500 0.72 +0.4 944,624 - HGI48_RS04500 0.72 -0.7 944,624 - HGI48_RS04500 0.72 -1.3 944,624 - HGI48_RS04500 0.72 -1.0 944,624 - HGI48_RS04500 0.72 +0.6 944,624 - +0.2 944,624 - HGI48_RS04500 0.72 +0.4 944,624 - HGI48_RS04500 0.72 -0.5 944,624 - HGI48_RS04500 0.72 -0.5 944,624 - -0.2 944,624 - HGI48_RS04500 0.72 -1.4 944,650 + HGI48_RS04500 0.73 -0.2 944,680 + HGI48_RS04500 0.75 -0.4 944,680 + HGI48_RS04500 0.75 -1.5 944,681 - +3.1 944,695 - HGI48_RS04500 0.76 +0.3 944,810 + +3.1 944,810 + HGI48_RS04500 0.83 -0.0 944,833 + HGI48_RS04500 0.85 -0.5 944,833 + HGI48_RS04500 0.85 -0.5 944,833 + HGI48_RS04500 0.85 -2.2 944,834 - HGI48_RS04500 0.85 -1.7 944,834 - HGI48_RS04500 0.85 -2.0 944,834 - HGI48_RS04500 0.85 -0.6 944,966 + +0.7 944,967 - -1.0 944,967 - -1.9 944,967 - -0.8 944,972 + +2.4 945,019 - -1.9 945,067 + -0.6 945,067 + +0.8 945,068 - -0.8 945,110 - +0.4 945,110 - -2.4 945,143 + -0.2 945,163 + +0.8 945,163 + +0.1 945,164 - -0.8 945,164 - -2.2 945,164 - -1.8 945,235 - -0.2 945,248 + -0.4 945,248 + +0.0 945,299 + -0.6 945,300 - -0.5 945,300 - -0.8 945,302 + -1.0 945,302 + +0.5 945,302 + -0.2 945,302 + +0.4 945,302 + +0.5 945,303 - +1.0 945,303 - -0.4 945,303 - -0.8 945,322 + +0.6 945,323 - -0.9 945,344 - -0.6 945,375 + -0.3 945,375 + -1.5 945,375 + +0.2 945,376 - -2.4 945,377 + -2.7 945,378 - -0.4 945,399 + -0.1 945,399 + -1.8 945,400 - -1.4 945,435 + +1.1 945,435 + -0.4 945,458 - +1.1 945,488 + -0.7 945,492 + -0.4 945,493 - +0.5 945,496 + +0.8 945,503 + -0.2 945,503 + -1.2 945,504 - +1.2 945,551 + -0.5 945,689 + HGI48_RS04505 0.16 -1.2 945,690 - HGI48_RS04505 0.16 +0.5 945,718 - HGI48_RS04505 0.19 -0.5 945,761 + -0.8 945,815 + HGI48_RS04505 0.31 -2.8 945,815 + HGI48_RS04505 0.31 +0.8 945,815 + -0.8 945,815 + HGI48_RS04505 0.31 +0.3 945,816 - HGI48_RS04505 0.31 -0.2 945,816 - -0.8 945,902 + HGI48_RS04505 0.41 +0.0 945,903 - HGI48_RS04505 0.41 -0.8 945,903 - +0.8 945,903 - +1.8 945,952 - HGI48_RS04505 0.46 +0.1 946,013 - HGI48_RS04505 0.53 -0.2 946,082 - HGI48_RS04505 0.61 -1.5 946,082 - HGI48_RS04505 0.61 +0.5
Or see this region's nucleotide sequence