Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04490 and HGI48_RS04495 are separated by 162 nucleotides HGI48_RS04495 and HGI48_RS04500 are separated by 370 nucleotides
HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383
_RS04490
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
HGI48_RS04500: HGI48_RS04500 - fumarate hydratase, at 943,443 to 945,086
_RS04500
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.611 kb on + strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.638 kb on + strand, within HGI48_RS04490 at 940.660 kb on - strand, within HGI48_RS04490 at 940.669 kb on + strand at 940.670 kb on - strand at 940.670 kb on - strand, within HGI48_RS04490 at 940.803 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 941.082 kb on + strand, within HGI48_RS04490 at 941.163 kb on + strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.271 kb on + strand at 941.271 kb on + strand at 941.271 kb on + strand at 941.279 kb on - strand at 941.279 kb on - strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.359 kb on + strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.368 kb on + strand at 941.377 kb on + strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.404 kb on - strand at 941.404 kb on - strand at 941.406 kb on + strand at 941.413 kb on - strand at 941.413 kb on - strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.417 kb on - strand at 941.559 kb on + strand at 941.559 kb on + strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.681 kb on + strand at 941.837 kb on + strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.269 kb on + strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.494 kb on - strand, within HGI48_RS04495 at 942.516 kb on + strand, within HGI48_RS04495 at 942.540 kb on + strand, within HGI48_RS04495 at 942.541 kb on - strand, within HGI48_RS04495 at 942.947 kb on + strand at 942.948 kb on - strand at 942.964 kb on + strand at 943.024 kb on - strand at 943.027 kb on + strand at 943.066 kb on - strand at 943.097 kb on + strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.117 kb on + strand at 943.118 kb on - strand at 943.118 kb on - strand at 943.372 kb on + strand at 943.396 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.550 kb on + strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.662 kb on - strand, within HGI48_RS04500 at 943.662 kb on - strand, within HGI48_RS04500 at 943.747 kb on + strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.825 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.829 kb on - strand at 943.849 kb on + strand, within HGI48_RS04500 at 943.850 kb on - strand, within HGI48_RS04500 at 944.011 kb on - strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 940,611 + HGI48_RS04490 0.50 -0.3 940,611 + HGI48_RS04490 0.50 -1.2 940,612 - HGI48_RS04490 0.50 -1.3 940,612 - HGI48_RS04490 0.50 +0.6 940,638 + HGI48_RS04490 0.51 -0.9 940,660 - HGI48_RS04490 0.53 -1.5 940,669 + +3.1 940,670 - +0.2 940,670 - HGI48_RS04490 0.54 +0.1 940,803 + HGI48_RS04490 0.62 -0.3 940,869 + HGI48_RS04490 0.66 -0.2 940,869 + HGI48_RS04490 0.66 +0.3 940,918 + HGI48_RS04490 0.70 -1.6 940,918 + HGI48_RS04490 0.70 -1.2 940,918 + HGI48_RS04490 0.70 -0.8 940,918 + HGI48_RS04490 0.70 -1.7 940,920 + HGI48_RS04490 0.70 -1.8 940,920 + HGI48_RS04490 0.70 -0.1 940,920 + HGI48_RS04490 0.70 -0.2 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 -2.0 940,920 + HGI48_RS04490 0.70 -0.7 940,920 + HGI48_RS04490 0.70 -0.5 940,920 + HGI48_RS04490 0.70 -2.2 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 +0.6 940,920 + HGI48_RS04490 0.70 -0.8 940,920 + -0.8 940,921 - HGI48_RS04490 0.70 -0.5 940,921 - HGI48_RS04490 0.70 -0.2 940,921 - HGI48_RS04490 0.70 -1.5 940,921 - +0.2 940,921 - HGI48_RS04490 0.70 -0.5 940,921 - HGI48_RS04490 0.70 -0.2 940,921 - HGI48_RS04490 0.70 +0.0 940,921 - HGI48_RS04490 0.70 -1.2 940,921 - HGI48_RS04490 0.70 -1.8 940,921 - HGI48_RS04490 0.70 +0.8 940,921 - HGI48_RS04490 0.70 -1.2 941,082 + HGI48_RS04490 0.80 +0.1 941,163 + HGI48_RS04490 0.86 -2.2 941,164 - HGI48_RS04490 0.86 +0.1 941,164 - HGI48_RS04490 0.86 -1.0 941,164 - HGI48_RS04490 0.86 -0.5 941,271 + +0.4 941,271 + -1.7 941,271 + -0.3 941,279 - +0.4 941,279 - +1.0 941,280 + -1.8 941,280 + +0.2 941,280 + +0.6 941,281 - +0.3 941,281 - -0.0 941,281 - -2.4 941,281 - +1.1 941,327 + +0.3 941,327 + +0.3 941,327 + -2.8 941,327 + -0.6 941,359 + +0.9 941,360 - +0.4 941,360 - +0.8 941,360 - -0.8 941,360 - +1.0 941,368 + +0.8 941,377 + +0.4 941,378 - +0.1 941,378 - +0.2 941,378 - +0.8 941,404 - -0.4 941,404 - +0.3 941,406 + -0.8 941,413 - -0.6 941,413 - +0.2 941,416 + +0.1 941,416 + -0.5 941,416 + +0.4 941,416 + -0.2 941,416 + +1.5 941,417 - -0.5 941,559 + -0.2 941,559 + -0.9 941,560 - -0.3 941,560 - -0.3 941,652 + -2.2 941,652 + -0.5 941,652 + -1.6 941,652 + -1.2 941,653 - -1.1 941,653 - -1.2 941,653 - +0.8 941,681 + +0.6 941,837 + HGI48_RS04495 0.19 -2.4 941,838 - HGI48_RS04495 0.19 -0.9 941,838 - HGI48_RS04495 0.19 +0.3 942,175 + HGI48_RS04495 0.41 -0.2 942,175 + HGI48_RS04495 0.41 -1.5 942,176 - HGI48_RS04495 0.41 -1.5 942,176 - HGI48_RS04495 0.41 -0.9 942,176 - HGI48_RS04495 0.41 -1.7 942,176 - HGI48_RS04495 0.41 +0.4 942,269 + HGI48_RS04495 0.47 -0.4 942,270 - HGI48_RS04495 0.47 +0.1 942,270 - HGI48_RS04495 0.47 -0.8 942,270 - HGI48_RS04495 0.47 -2.0 942,494 - HGI48_RS04495 0.62 +0.2 942,516 + HGI48_RS04495 0.64 -2.2 942,540 + HGI48_RS04495 0.65 -0.6 942,541 - HGI48_RS04495 0.65 +0.2 942,947 + -0.2 942,948 - -0.6 942,964 + -0.2 943,024 - -0.5 943,027 + -2.4 943,066 - +0.1 943,097 + +0.4 943,098 - -0.2 943,098 - +0.2 943,098 - +0.8 943,117 + -0.8 943,118 - -1.0 943,118 - -0.2 943,372 + -0.3 943,396 - +0.2 943,401 + -0.2 943,401 + +0.1 943,418 + -0.5 943,418 + +0.5 943,418 + +0.5 943,418 + -0.8 943,419 - -0.6 943,419 - -0.8 943,419 - -1.5 943,419 - -1.2 943,419 - -0.9 943,550 + -1.4 943,551 - +0.1 943,551 - -1.3 943,551 - +0.4 943,551 - -1.4 943,551 - +0.2 943,662 - HGI48_RS04500 0.13 -0.1 943,662 - HGI48_RS04500 0.13 -0.2 943,747 + HGI48_RS04500 0.18 -0.2 943,748 - HGI48_RS04500 0.19 -1.2 943,748 - HGI48_RS04500 0.19 +0.0 943,748 - HGI48_RS04500 0.19 -0.9 943,825 + HGI48_RS04500 0.23 -1.8 943,828 + HGI48_RS04500 0.23 -1.2 943,828 + HGI48_RS04500 0.23 -0.2 943,829 - -0.8 943,849 + HGI48_RS04500 0.25 +0.3 943,850 - HGI48_RS04500 0.25 -0.4 944,011 - HGI48_RS04500 0.35 -1.5 944,053 + -0.2 944,053 + HGI48_RS04500 0.37 -1.4 944,053 + +0.8 944,053 + HGI48_RS04500 0.37 -1.8 944,054 - HGI48_RS04500 0.37 -1.5 944,054 - HGI48_RS04500 0.37 +1.3 944,054 - HGI48_RS04500 0.37 -1.6
Or see this region's nucleotide sequence