Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04485 and HGI48_RS04490 are separated by 13 nucleotides HGI48_RS04490 and HGI48_RS04495 are separated by 162 nucleotides
HGI48_RS04485: HGI48_RS04485 - NADH:flavorubredoxin reductase NorW, at 938,677 to 939,834
_RS04485
HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383
_RS04490
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
Position (kb) 939
940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.868 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.937 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.966 kb on - strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.030 kb on - strand, within HGI48_RS04485 at 939.034 kb on - strand, within HGI48_RS04485 at 939.114 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.358 kb on - strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.444 kb on - strand, within HGI48_RS04485 at 939.543 kb on - strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.560 kb on - strand, within HGI48_RS04485 at 939.615 kb on + strand, within HGI48_RS04485 at 939.615 kb on + strand at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.780 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.838 kb on + strand at 939.839 kb on - strand at 939.863 kb on - strand at 939.911 kb on + strand at 939.911 kb on + strand at 939.973 kb on - strand at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.282 kb on + strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand at 940.348 kb on - strand, within HGI48_RS04490 at 940.436 kb on - strand, within HGI48_RS04490 at 940.521 kb on + strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.638 kb on + strand, within HGI48_RS04490 at 940.660 kb on - strand, within HGI48_RS04490 at 940.669 kb on + strand at 940.670 kb on - strand at 940.670 kb on - strand, within HGI48_RS04490 at 940.803 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 941.082 kb on + strand, within HGI48_RS04490 at 941.163 kb on + strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.271 kb on + strand at 941.271 kb on + strand at 941.271 kb on + strand at 941.279 kb on - strand at 941.279 kb on - strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.359 kb on + strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.368 kb on + strand at 941.377 kb on + strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.404 kb on - strand at 941.404 kb on - strand at 941.406 kb on + strand at 941.413 kb on - strand at 941.413 kb on - strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.417 kb on - strand at 941.559 kb on + strand at 941.559 kb on + strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.681 kb on + strand at 941.837 kb on + strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.269 kb on + strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 938,868 + HGI48_RS04485 0.16 +0.6 938,928 + HGI48_RS04485 0.22 -2.5 938,928 + HGI48_RS04485 0.22 +0.4 938,929 - HGI48_RS04485 0.22 +0.0 938,929 - HGI48_RS04485 0.22 -0.5 938,937 + HGI48_RS04485 0.22 -1.0 938,940 + HGI48_RS04485 0.23 +0.5 938,940 + HGI48_RS04485 0.23 +0.3 938,940 + HGI48_RS04485 0.23 -0.1 938,940 + HGI48_RS04485 0.23 -0.1 938,940 + +0.2 938,941 - HGI48_RS04485 0.23 +1.0 938,941 - HGI48_RS04485 0.23 -0.5 938,941 - HGI48_RS04485 0.23 +0.4 938,941 - HGI48_RS04485 0.23 -0.6 938,941 - HGI48_RS04485 0.23 -0.5 938,966 - HGI48_RS04485 0.25 +0.5 939,029 + HGI48_RS04485 0.30 +1.5 939,029 + HGI48_RS04485 0.30 +1.3 939,030 - HGI48_RS04485 0.30 -0.5 939,034 - HGI48_RS04485 0.31 -0.4 939,114 + HGI48_RS04485 0.38 -0.5 939,180 + HGI48_RS04485 0.43 -0.7 939,180 + HGI48_RS04485 0.43 +1.0 939,181 - HGI48_RS04485 0.44 -1.8 939,181 - HGI48_RS04485 0.44 -2.2 939,358 - HGI48_RS04485 0.59 -0.3 939,397 + HGI48_RS04485 0.62 -0.5 939,397 + HGI48_RS04485 0.62 -0.4 939,444 - HGI48_RS04485 0.66 -2.2 939,543 - HGI48_RS04485 0.75 +0.2 939,559 + HGI48_RS04485 0.76 -1.0 939,559 + HGI48_RS04485 0.76 +0.2 939,560 - HGI48_RS04485 0.76 -0.6 939,615 + HGI48_RS04485 0.81 -0.8 939,615 + +0.2 939,616 - -0.8 939,616 - HGI48_RS04485 0.81 -0.5 939,616 - -0.2 939,616 - HGI48_RS04485 0.81 -0.9 939,616 - HGI48_RS04485 0.81 +0.8 939,713 + HGI48_RS04485 0.89 -0.0 939,713 + HGI48_RS04485 0.89 -1.0 939,713 + HGI48_RS04485 0.89 -0.6 939,714 - HGI48_RS04485 0.90 +0.1 939,714 - HGI48_RS04485 0.90 +0.8 939,780 + -0.4 939,834 + -0.0 939,834 + -1.2 939,834 + -0.8 939,834 + -0.9 939,835 - -0.8 939,835 - +0.1 939,835 - -0.7 939,835 - -2.2 939,835 - -0.2 939,835 - -2.2 939,835 - -0.2 939,835 - +1.2 939,835 - -0.2 939,835 - -0.5 939,835 - +1.4 939,838 + -1.0 939,839 - -0.0 939,863 - -0.4 939,911 + -0.4 939,911 + -1.5 939,973 - -0.5 940,009 + HGI48_RS04490 0.10 +0.5 940,009 + HGI48_RS04490 0.10 -0.2 940,009 + HGI48_RS04490 0.10 -0.3 940,010 - HGI48_RS04490 0.11 -0.0 940,010 - HGI48_RS04490 0.11 -0.8 940,282 + HGI48_RS04490 0.28 +0.8 940,283 - HGI48_RS04490 0.28 -0.9 940,283 - HGI48_RS04490 0.28 -0.5 940,347 + HGI48_RS04490 0.32 +0.7 940,347 + HGI48_RS04490 0.32 +1.1 940,347 + HGI48_RS04490 0.32 -1.0 940,347 + +1.4 940,348 - HGI48_RS04490 0.33 -1.0 940,436 - HGI48_RS04490 0.38 +1.4 940,521 + HGI48_RS04490 0.44 +1.0 940,522 - HGI48_RS04490 0.44 -0.4 940,522 - HGI48_RS04490 0.44 -0.3 940,611 + HGI48_RS04490 0.50 -0.3 940,611 + HGI48_RS04490 0.50 -1.2 940,612 - HGI48_RS04490 0.50 -1.3 940,612 - HGI48_RS04490 0.50 +0.6 940,638 + HGI48_RS04490 0.51 -0.9 940,660 - HGI48_RS04490 0.53 -1.5 940,669 + +3.1 940,670 - +0.2 940,670 - HGI48_RS04490 0.54 +0.1 940,803 + HGI48_RS04490 0.62 -0.3 940,869 + HGI48_RS04490 0.66 -0.2 940,869 + HGI48_RS04490 0.66 +0.3 940,918 + HGI48_RS04490 0.70 -1.6 940,918 + HGI48_RS04490 0.70 -1.2 940,918 + HGI48_RS04490 0.70 -0.8 940,918 + HGI48_RS04490 0.70 -1.7 940,920 + HGI48_RS04490 0.70 -1.8 940,920 + HGI48_RS04490 0.70 -0.1 940,920 + HGI48_RS04490 0.70 -0.2 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 -2.0 940,920 + HGI48_RS04490 0.70 -0.7 940,920 + HGI48_RS04490 0.70 -0.5 940,920 + HGI48_RS04490 0.70 -2.2 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 +0.6 940,920 + HGI48_RS04490 0.70 -0.8 940,920 + -0.8 940,921 - HGI48_RS04490 0.70 -0.5 940,921 - HGI48_RS04490 0.70 -0.2 940,921 - HGI48_RS04490 0.70 -1.5 940,921 - +0.2 940,921 - HGI48_RS04490 0.70 -0.5 940,921 - HGI48_RS04490 0.70 -0.2 940,921 - HGI48_RS04490 0.70 +0.0 940,921 - HGI48_RS04490 0.70 -1.2 940,921 - HGI48_RS04490 0.70 -1.8 940,921 - HGI48_RS04490 0.70 +0.8 940,921 - HGI48_RS04490 0.70 -1.2 941,082 + HGI48_RS04490 0.80 +0.1 941,163 + HGI48_RS04490 0.86 -2.2 941,164 - HGI48_RS04490 0.86 +0.1 941,164 - HGI48_RS04490 0.86 -1.0 941,164 - HGI48_RS04490 0.86 -0.5 941,271 + +0.4 941,271 + -1.7 941,271 + -0.3 941,279 - +0.4 941,279 - +1.0 941,280 + -1.8 941,280 + +0.2 941,280 + +0.6 941,281 - +0.3 941,281 - -0.0 941,281 - -2.4 941,281 - +1.1 941,327 + +0.3 941,327 + +0.3 941,327 + -2.8 941,327 + -0.6 941,359 + +0.9 941,360 - +0.4 941,360 - +0.8 941,360 - -0.8 941,360 - +1.0 941,368 + +0.8 941,377 + +0.4 941,378 - +0.1 941,378 - +0.2 941,378 - +0.8 941,404 - -0.4 941,404 - +0.3 941,406 + -0.8 941,413 - -0.6 941,413 - +0.2 941,416 + +0.1 941,416 + -0.5 941,416 + +0.4 941,416 + -0.2 941,416 + +1.5 941,417 - -0.5 941,559 + -0.2 941,559 + -0.9 941,560 - -0.3 941,560 - -0.3 941,652 + -2.2 941,652 + -0.5 941,652 + -1.6 941,652 + -1.2 941,653 - -1.1 941,653 - -1.2 941,653 - +0.8 941,681 + +0.6 941,837 + HGI48_RS04495 0.19 -2.4 941,838 - HGI48_RS04495 0.19 -0.9 941,838 - HGI48_RS04495 0.19 +0.3 942,175 + HGI48_RS04495 0.41 -0.2 942,175 + HGI48_RS04495 0.41 -1.5 942,176 - HGI48_RS04495 0.41 -1.5 942,176 - HGI48_RS04495 0.41 -0.9 942,176 - HGI48_RS04495 0.41 -1.7 942,176 - HGI48_RS04495 0.41 +0.4 942,269 + HGI48_RS04495 0.47 -0.4 942,270 - HGI48_RS04495 0.47 +0.1 942,270 - HGI48_RS04495 0.47 -0.8 942,270 - HGI48_RS04495 0.47 -2.0
Or see this region's nucleotide sequence