Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04460 and HGI48_RS04465 are separated by 147 nucleotides HGI48_RS04465 and HGI48_RS04470 are separated by 46 nucleotides HGI48_RS04470 and HGI48_RS04475 are separated by 448 nucleotides
HGI48_RS04460: HGI48_RS04460 - cell division protein ZipA, at 933,855 to 934,754
_RS04460
HGI48_RS04465: HGI48_RS04465 - L-methionine/branched-chain amino acid transporter, at 934,902 to 936,155
_RS04465
HGI48_RS04470: HGI48_RS04470 - accessory factor UbiK family protein, at 936,202 to 936,486
_RS04470
HGI48_RS04475: HGI48_RS04475 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 936,935 to 937,588
_RS04475
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 934.723 kb on + strand at 934.727 kb on + strand at 934.727 kb on + strand at 934.733 kb on + strand at 934.733 kb on + strand at 934.737 kb on - strand at 934.737 kb on - strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.779 kb on + strand at 934.780 kb on - strand at 934.780 kb on - strand at 934.814 kb on - strand at 934.814 kb on - strand at 934.914 kb on - strand at 934.914 kb on - strand at 934.916 kb on + strand at 934.916 kb on + strand at 934.917 kb on - strand at 934.917 kb on - strand at 934.917 kb on - strand at 934.918 kb on - strand at 935.351 kb on - strand, within HGI48_RS04465 at 935.351 kb on - strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand at 935.578 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand at 935.582 kb on + strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand at 935.644 kb on - strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.763 kb on - strand at 935.763 kb on - strand, within HGI48_RS04465 at 935.763 kb on - strand, within HGI48_RS04465 at 935.763 kb on - strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand at 935.768 kb on + strand, within HGI48_RS04465 at 935.768 kb on + strand, within HGI48_RS04465 at 935.768 kb on + strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.900 kb on + strand, within HGI48_RS04465 at 935.900 kb on + strand, within HGI48_RS04465 at 935.901 kb on - strand at 935.940 kb on + strand, within HGI48_RS04465 at 935.941 kb on - strand, within HGI48_RS04465 at 935.958 kb on - strand, within HGI48_RS04465 at 935.968 kb on - strand, within HGI48_RS04465 at 936.040 kb on + strand at 936.040 kb on + strand at 936.040 kb on + strand at 936.041 kb on - strand at 936.041 kb on - strand at 936.084 kb on + strand at 936.085 kb on - strand at 936.085 kb on - strand at 936.203 kb on + strand at 936.204 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.524 kb on - strand at 936.524 kb on - strand at 936.535 kb on - strand at 936.535 kb on - strand at 936.553 kb on + strand at 936.553 kb on + strand at 936.596 kb on + strand at 936.597 kb on - strand at 936.597 kb on - strand at 936.597 kb on - strand at 936.638 kb on + strand at 936.669 kb on + strand at 936.781 kb on + strand at 936.821 kb on + strand at 936.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 934,723 + -0.7 934,727 + +0.6 934,727 + -0.1 934,733 + -0.1 934,733 + +0.8 934,737 - +1.1 934,737 - +1.1 934,773 + -0.3 934,773 + +0.1 934,773 + +0.1 934,773 + +2.0 934,773 + +0.2 934,774 - -0.6 934,774 - +0.4 934,774 - -1.5 934,774 - -0.5 934,774 - -0.2 934,779 + -0.4 934,780 - -0.2 934,780 - +0.0 934,814 - -0.2 934,814 - -1.0 934,914 - -0.2 934,914 - +0.8 934,916 + +0.1 934,916 + +0.7 934,917 - -1.5 934,917 - -1.2 934,917 - -0.2 934,918 - -0.2 935,351 - HGI48_RS04465 0.36 +0.0 935,351 - HGI48_RS04465 0.36 -1.8 935,578 + HGI48_RS04465 0.54 -0.2 935,578 + HGI48_RS04465 0.54 +0.1 935,578 + HGI48_RS04465 0.54 +1.4 935,578 + HGI48_RS04465 0.54 -2.2 935,578 + +1.4 935,578 + HGI48_RS04465 0.54 -2.0 935,582 + HGI48_RS04465 0.54 -0.2 935,582 + HGI48_RS04465 0.54 +0.2 935,582 + HGI48_RS04465 0.54 -0.5 935,582 + -0.8 935,582 + HGI48_RS04465 0.54 -1.2 935,582 + HGI48_RS04465 0.54 -1.8 935,582 + HGI48_RS04465 0.54 +0.5 935,582 + HGI48_RS04465 0.54 +0.3 935,582 + +1.2 935,582 + HGI48_RS04465 0.54 -1.2 935,583 - HGI48_RS04465 0.54 -0.5 935,583 - HGI48_RS04465 0.54 -0.2 935,583 - HGI48_RS04465 0.54 +1.1 935,583 - -0.2 935,583 - HGI48_RS04465 0.54 -0.0 935,583 - HGI48_RS04465 0.54 +0.4 935,583 - HGI48_RS04465 0.54 +0.2 935,615 + HGI48_RS04465 0.57 +0.6 935,615 + HGI48_RS04465 0.57 -1.2 935,615 + HGI48_RS04465 0.57 -1.5 935,615 + HGI48_RS04465 0.57 -1.0 935,616 - HGI48_RS04465 0.57 +0.9 935,616 - HGI48_RS04465 0.57 -0.1 935,616 - HGI48_RS04465 0.57 -1.8 935,616 - HGI48_RS04465 0.57 -1.7 935,616 - HGI48_RS04465 0.57 -0.9 935,616 - +1.5 935,644 - HGI48_RS04465 0.59 +0.8 935,762 + HGI48_RS04465 0.69 -1.2 935,762 + HGI48_RS04465 0.69 -0.9 935,762 + HGI48_RS04465 0.69 -0.2 935,762 + HGI48_RS04465 0.69 -1.9 935,762 + HGI48_RS04465 0.69 -0.0 935,762 + HGI48_RS04465 0.69 +0.1 935,763 - +0.8 935,763 - HGI48_RS04465 0.69 -1.8 935,763 - HGI48_RS04465 0.69 -0.4 935,763 - HGI48_RS04465 0.69 +0.0 935,766 + HGI48_RS04465 0.69 -2.5 935,766 + HGI48_RS04465 0.69 -1.5 935,766 + HGI48_RS04465 0.69 -0.8 935,766 + HGI48_RS04465 0.69 +1.5 935,766 + HGI48_RS04465 0.69 +0.2 935,766 + HGI48_RS04465 0.69 -1.2 935,766 + HGI48_RS04465 0.69 -0.2 935,766 + HGI48_RS04465 0.69 +0.6 935,766 + HGI48_RS04465 0.69 +0.2 935,767 - HGI48_RS04465 0.69 -1.5 935,767 - HGI48_RS04465 0.69 -0.2 935,767 - HGI48_RS04465 0.69 -2.0 935,767 - HGI48_RS04465 0.69 -1.5 935,767 - HGI48_RS04465 0.69 -1.5 935,767 - HGI48_RS04465 0.69 -0.3 935,767 - HGI48_RS04465 0.69 -1.2 935,767 - HGI48_RS04465 0.69 -2.8 935,767 - HGI48_RS04465 0.69 +0.3 935,767 - HGI48_RS04465 0.69 -0.7 935,767 - -0.8 935,768 + HGI48_RS04465 0.69 +0.1 935,768 + HGI48_RS04465 0.69 -0.8 935,768 + HGI48_RS04465 0.69 -1.0 935,769 - HGI48_RS04465 0.69 -1.6 935,769 - HGI48_RS04465 0.69 -0.4 935,769 - HGI48_RS04465 0.69 +0.4 935,769 - HGI48_RS04465 0.69 +1.1 935,900 + HGI48_RS04465 0.80 -0.5 935,900 + HGI48_RS04465 0.80 -1.8 935,901 - +1.5 935,940 + HGI48_RS04465 0.83 -0.5 935,941 - HGI48_RS04465 0.83 -0.1 935,958 - HGI48_RS04465 0.84 -0.4 935,968 - HGI48_RS04465 0.85 -2.9 936,040 + +0.8 936,040 + -0.8 936,040 + -0.6 936,041 - +0.8 936,041 - +0.5 936,084 + -1.8 936,085 - -0.2 936,085 - -2.8 936,203 + +0.4 936,204 - -1.2 936,522 - +0.6 936,522 - +0.5 936,522 - -1.8 936,522 - -0.4 936,523 + +0.3 936,523 + +0.2 936,523 + -0.5 936,523 + -0.0 936,524 - -0.5 936,524 - -0.7 936,535 - -1.4 936,535 - +1.2 936,553 + +1.2 936,553 + -1.2 936,596 + -0.1 936,597 - -2.1 936,597 - -0.1 936,597 - -0.8 936,638 + -0.5 936,669 + -2.8 936,781 + +0.6 936,821 + -0.4 936,914 + -1.0
Or see this region's nucleotide sequence