Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04430 and HGI48_RS04435 are separated by 295 nucleotides HGI48_RS04435 and HGI48_RS04440 are separated by 41 nucleotides
HGI48_RS04430: HGI48_RS04430 - helix-turn-helix transcriptional regulator, at 927,838 to 928,401
_RS04430
HGI48_RS04435: HGI48_RS04435 - PTS glucose transporter subunit IIA, at 928,697 to 929,206
_RS04435
HGI48_RS04440: HGI48_RS04440 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 929,248 to 930,975
_RS04440
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.722 kb on + strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.790 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.831 kb on - strand at 928.075 kb on + strand, within HGI48_RS04430 at 928.075 kb on + strand, within HGI48_RS04430 at 928.076 kb on - strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.118 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.146 kb on - strand, within HGI48_RS04430 at 928.146 kb on - strand at 928.146 kb on - strand at 928.146 kb on - strand, within HGI48_RS04430 at 928.151 kb on + strand at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.261 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.420 kb on - strand at 928.422 kb on + strand at 928.422 kb on + strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.430 kb on + strand at 928.476 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.481 kb on - strand at 928.481 kb on - strand at 928.533 kb on + strand at 928.533 kb on + strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.557 kb on + strand at 928.618 kb on - strand at 928.618 kb on - strand at 928.635 kb on - strand at 928.698 kb on + strand at 928.777 kb on + strand, within HGI48_RS04435 at 928.778 kb on - strand, within HGI48_RS04435 at 929.042 kb on - strand, within HGI48_RS04435 at 929.084 kb on + strand at 929.085 kb on - strand, within HGI48_RS04435 at 929.218 kb on - strand at 929.224 kb on + strand at 929.225 kb on - strand at 929.228 kb on - strand at 929.268 kb on + strand at 929.293 kb on + strand at 929.293 kb on + strand at 929.294 kb on - strand at 929.318 kb on - strand at 929.351 kb on + strand at 929.351 kb on + strand at 929.352 kb on - strand at 929.437 kb on + strand, within HGI48_RS04440 at 929.438 kb on - strand, within HGI48_RS04440 at 929.442 kb on + strand, within HGI48_RS04440 at 929.443 kb on - strand, within HGI48_RS04440 at 929.443 kb on - strand at 929.443 kb on - strand, within HGI48_RS04440 at 929.555 kb on + strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand at 929.598 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.892 kb on + strand, within HGI48_RS04440 at 929.945 kb on + strand, within HGI48_RS04440 at 930.026 kb on + strand, within HGI48_RS04440 at 930.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 927,722 + +0.3 927,722 + -1.1 927,722 + -1.1 927,723 - -0.5 927,723 - -0.7 927,723 - +0.0 927,790 + -0.2 927,793 + -0.8 927,793 + -1.2 927,793 + -0.8 927,793 + +0.8 927,793 + -2.0 927,793 + -0.4 927,793 + +0.0 927,793 + -0.2 927,793 + -1.2 927,794 - +0.0 927,794 - -2.2 927,794 - -0.4 927,794 - -0.2 927,794 - -0.2 927,794 - +0.4 927,794 - -0.2 927,831 - -0.1 928,075 + HGI48_RS04430 0.42 +1.9 928,075 + HGI48_RS04430 0.42 +1.1 928,076 - HGI48_RS04430 0.42 +0.5 928,079 + HGI48_RS04430 0.43 -1.6 928,079 + HGI48_RS04430 0.43 +0.3 928,079 + -0.8 928,079 + HGI48_RS04430 0.43 -1.5 928,079 + HGI48_RS04430 0.43 +0.0 928,079 + HGI48_RS04430 0.43 -0.2 928,079 + HGI48_RS04430 0.43 -0.4 928,079 + HGI48_RS04430 0.43 +0.5 928,079 + HGI48_RS04430 0.43 +0.4 928,079 + HGI48_RS04430 0.43 +1.5 928,079 + HGI48_RS04430 0.43 +0.0 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + HGI48_RS04430 0.43 -0.5 928,079 + +0.2 928,079 + HGI48_RS04430 0.43 +0.4 928,080 - HGI48_RS04430 0.43 -0.9 928,080 - HGI48_RS04430 0.43 +1.0 928,080 - -0.8 928,080 - HGI48_RS04430 0.43 -2.5 928,080 - HGI48_RS04430 0.43 -1.5 928,080 - HGI48_RS04430 0.43 -0.3 928,080 - HGI48_RS04430 0.43 -0.4 928,080 - HGI48_RS04430 0.43 +0.5 928,080 - HGI48_RS04430 0.43 -0.4 928,118 + HGI48_RS04430 0.50 +0.1 928,145 + HGI48_RS04430 0.54 -0.5 928,145 + HGI48_RS04430 0.54 -1.0 928,145 + HGI48_RS04430 0.54 -1.0 928,146 - HGI48_RS04430 0.55 +0.7 928,146 - +2.4 928,146 - +1.2 928,146 - HGI48_RS04430 0.55 -0.3 928,151 + -0.8 928,260 + HGI48_RS04430 0.75 -0.2 928,260 + HGI48_RS04430 0.75 -2.3 928,260 + HGI48_RS04430 0.75 -0.3 928,261 - +1.4 928,392 + +0.5 928,392 + +1.4 928,392 + +1.0 928,392 + +1.7 928,419 + -0.3 928,419 + -0.5 928,419 + +1.2 928,420 - -1.0 928,422 + +0.0 928,422 + -0.3 928,423 - -2.2 928,423 - +0.1 928,423 - +0.4 928,423 - +0.0 928,430 + +1.5 928,476 + -1.2 928,480 + +1.1 928,480 + +1.0 928,480 + -1.8 928,480 + +0.1 928,480 + +0.0 928,480 + -0.2 928,481 - -1.1 928,481 - +1.2 928,533 + -0.4 928,533 + +0.1 928,534 - -0.5 928,534 - -0.5 928,534 - -0.5 928,557 + -1.2 928,618 - -2.8 928,618 - +0.5 928,635 - -0.8 928,698 + -1.0 928,777 + HGI48_RS04435 0.16 -2.2 928,778 - HGI48_RS04435 0.16 -0.1 929,042 - HGI48_RS04435 0.68 -1.5 929,084 + +0.2 929,085 - HGI48_RS04435 0.76 -1.2 929,218 - +0.2 929,224 + -0.6 929,225 - -1.1 929,228 - -0.8 929,268 + -0.8 929,293 + -0.6 929,293 + -2.2 929,294 - -3.0 929,318 - -2.0 929,351 + -0.8 929,351 + -1.4 929,352 - -2.2 929,437 + HGI48_RS04440 0.11 -1.5 929,438 - HGI48_RS04440 0.11 -1.5 929,442 + HGI48_RS04440 0.11 -0.5 929,443 - HGI48_RS04440 0.11 -0.1 929,443 - -0.8 929,443 - HGI48_RS04440 0.11 -1.2 929,555 + HGI48_RS04440 0.18 -1.0 929,588 - HGI48_RS04440 0.20 -1.5 929,588 - HGI48_RS04440 0.20 -0.2 929,598 + HGI48_RS04440 0.20 +0.3 929,598 + HGI48_RS04440 0.20 -2.4 929,598 + -0.8 929,598 + HGI48_RS04440 0.20 +0.5 929,608 + HGI48_RS04440 0.21 -0.4 929,608 + HGI48_RS04440 0.21 -0.2 929,892 + HGI48_RS04440 0.37 -1.8 929,945 + HGI48_RS04440 0.40 +1.2 930,026 + HGI48_RS04440 0.45 -1.7 930,027 - -0.8
Or see this region's nucleotide sequence