Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04420 and HGI48_RS04425 are separated by 171 nucleotides HGI48_RS04425 and HGI48_RS04430 are separated by 264 nucleotides
HGI48_RS04420: HGI48_RS04420 - HAMP domain-containing protein, at 925,024 to 926,442
_RS04420
HGI48_RS04425: HGI48_RS04425 - enoyl-CoA hydratase/isomerase family protein, at 926,614 to 927,573
_RS04425
HGI48_RS04430: HGI48_RS04430 - helix-turn-helix transcriptional regulator, at 927,838 to 928,401
_RS04430
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 925.721 kb on + strand, within HGI48_RS04420 at 925.722 kb on - strand, within HGI48_RS04420 at 925.750 kb on - strand at 925.750 kb on - strand, within HGI48_RS04420 at 925.991 kb on - strand, within HGI48_RS04420 at 926.038 kb on + strand, within HGI48_RS04420 at 926.087 kb on - strand, within HGI48_RS04420 at 926.095 kb on + strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.525 kb on + strand at 926.526 kb on - strand at 926.526 kb on - strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.542 kb on - strand at 926.542 kb on - strand at 926.555 kb on + strand at 926.555 kb on + strand at 926.556 kb on - strand at 926.560 kb on + strand at 926.560 kb on + strand at 926.560 kb on + strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.571 kb on + strand at 926.571 kb on + strand at 926.572 kb on - strand at 926.687 kb on + strand at 926.776 kb on + strand, within HGI48_RS04425 at 926.776 kb on + strand, within HGI48_RS04425 at 926.777 kb on - strand at 926.830 kb on + strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.866 kb on + strand, within HGI48_RS04425 at 926.866 kb on + strand, within HGI48_RS04425 at 926.910 kb on + strand at 926.910 kb on + strand, within HGI48_RS04425 at 926.910 kb on + strand, within HGI48_RS04425 at 926.911 kb on - strand, within HGI48_RS04425 at 926.911 kb on - strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.917 kb on - strand at 926.917 kb on - strand, within HGI48_RS04425 at 926.917 kb on - strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.128 kb on + strand, within HGI48_RS04425 at 927.128 kb on + strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.195 kb on - strand, within HGI48_RS04425 at 927.210 kb on + strand, within HGI48_RS04425 at 927.211 kb on - strand, within HGI48_RS04425 at 927.275 kb on + strand, within HGI48_RS04425 at 927.281 kb on + strand, within HGI48_RS04425 at 927.355 kb on + strand, within HGI48_RS04425 at 927.356 kb on - strand, within HGI48_RS04425 at 927.361 kb on + strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.410 kb on - strand, within HGI48_RS04425 at 927.535 kb on - strand at 927.543 kb on + strand at 927.554 kb on - strand at 927.554 kb on - strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.579 kb on + strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.663 kb on - strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.790 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.831 kb on - strand at 928.075 kb on + strand, within HGI48_RS04430 at 928.075 kb on + strand, within HGI48_RS04430 at 928.076 kb on - strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.118 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.146 kb on - strand, within HGI48_RS04430 at 928.146 kb on - strand at 928.146 kb on - strand at 928.146 kb on - strand, within HGI48_RS04430 at 928.151 kb on + strand at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.261 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.420 kb on - strand at 928.422 kb on + strand at 928.422 kb on + strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.430 kb on + strand at 928.476 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.481 kb on - strand at 928.481 kb on - strand at 928.533 kb on + strand at 928.533 kb on + strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 925,721 + HGI48_RS04420 0.49 +0.8 925,722 - HGI48_RS04420 0.49 -0.2 925,750 - -0.8 925,750 - HGI48_RS04420 0.51 -0.2 925,991 - HGI48_RS04420 0.68 -1.1 926,038 + HGI48_RS04420 0.71 +0.4 926,087 - HGI48_RS04420 0.75 -1.3 926,095 + HGI48_RS04420 0.75 +1.4 926,096 - HGI48_RS04420 0.76 -0.2 926,096 - HGI48_RS04420 0.76 -0.5 926,096 - HGI48_RS04420 0.76 +0.2 926,096 - +0.2 926,455 + -0.6 926,455 + -1.0 926,455 + +0.2 926,455 + -2.0 926,456 - -0.2 926,456 - +0.0 926,456 - -0.5 926,456 - -0.0 926,525 + +0.1 926,526 - -0.2 926,526 - +1.4 926,539 + +0.1 926,539 + -0.2 926,539 + -0.3 926,539 + +0.7 926,539 + +0.5 926,539 + -0.5 926,539 + -0.8 926,540 - -1.2 926,540 - -0.1 926,540 - -0.3 926,540 - -0.8 926,542 - -0.2 926,542 - -0.1 926,555 + -2.6 926,555 + -0.7 926,556 - -1.2 926,560 + -0.6 926,560 + +1.1 926,560 + +1.8 926,561 - -0.2 926,561 - +0.8 926,561 - -1.2 926,561 - -0.4 926,561 - +1.2 926,561 - -0.4 926,571 + -1.8 926,571 + -0.5 926,572 - -0.6 926,687 + -0.0 926,776 + HGI48_RS04425 0.17 +0.2 926,776 + HGI48_RS04425 0.17 -1.8 926,777 - -0.8 926,830 + HGI48_RS04425 0.23 +0.1 926,831 - HGI48_RS04425 0.23 -0.7 926,831 - HGI48_RS04425 0.23 -0.6 926,831 - HGI48_RS04425 0.23 -0.8 926,831 - HGI48_RS04425 0.23 -0.3 926,866 + HGI48_RS04425 0.26 -0.2 926,866 + HGI48_RS04425 0.26 +0.0 926,910 + -0.8 926,910 + HGI48_RS04425 0.31 -0.8 926,910 + HGI48_RS04425 0.31 +0.5 926,911 - HGI48_RS04425 0.31 -1.2 926,911 - HGI48_RS04425 0.31 -0.6 926,916 + HGI48_RS04425 0.31 +1.1 926,916 + HGI48_RS04425 0.31 +0.8 926,916 + HGI48_RS04425 0.31 -0.2 926,916 + HGI48_RS04425 0.31 +0.4 926,916 + HGI48_RS04425 0.31 -2.0 926,916 + HGI48_RS04425 0.31 +0.4 926,916 + HGI48_RS04425 0.31 +0.9 926,917 - +0.8 926,917 - HGI48_RS04425 0.32 -0.2 926,917 - HGI48_RS04425 0.32 +0.6 927,018 + HGI48_RS04425 0.42 -3.2 927,018 + HGI48_RS04425 0.42 +1.0 927,018 + HGI48_RS04425 0.42 -0.5 927,078 + HGI48_RS04425 0.48 +1.5 927,078 + HGI48_RS04425 0.48 +0.8 927,078 + HGI48_RS04425 0.48 +0.5 927,078 + HGI48_RS04425 0.48 +0.4 927,079 - HGI48_RS04425 0.48 +1.1 927,079 - HGI48_RS04425 0.48 -1.8 927,079 - HGI48_RS04425 0.48 -1.1 927,079 - HGI48_RS04425 0.48 +0.4 927,079 - HGI48_RS04425 0.48 +0.8 927,079 - HGI48_RS04425 0.48 -0.2 927,128 + HGI48_RS04425 0.54 -0.9 927,128 + HGI48_RS04425 0.54 -1.0 927,129 - HGI48_RS04425 0.54 +1.0 927,129 - HGI48_RS04425 0.54 -1.1 927,129 - HGI48_RS04425 0.54 -0.9 927,129 - HGI48_RS04425 0.54 -0.5 927,129 - HGI48_RS04425 0.54 -2.3 927,129 - +2.6 927,194 + HGI48_RS04425 0.60 +0.2 927,194 + HGI48_RS04425 0.60 -1.0 927,194 + HGI48_RS04425 0.60 -1.5 927,194 + HGI48_RS04425 0.60 -0.3 927,194 + HGI48_RS04425 0.60 -1.2 927,194 + HGI48_RS04425 0.60 -0.8 927,195 - HGI48_RS04425 0.61 +0.6 927,210 + HGI48_RS04425 0.62 +0.7 927,211 - HGI48_RS04425 0.62 +1.1 927,275 + HGI48_RS04425 0.69 +0.6 927,281 + HGI48_RS04425 0.69 -1.1 927,355 + HGI48_RS04425 0.77 +0.1 927,356 - HGI48_RS04425 0.77 -1.2 927,361 + HGI48_RS04425 0.78 -1.8 927,362 - HGI48_RS04425 0.78 +1.9 927,362 - HGI48_RS04425 0.78 -1.8 927,362 - HGI48_RS04425 0.78 -0.2 927,410 - HGI48_RS04425 0.83 -1.1 927,535 - +0.8 927,543 + +1.8 927,554 - -1.3 927,554 - +0.0 927,577 + -0.3 927,577 + -0.4 927,577 + +0.8 927,577 + +1.7 927,577 + -1.1 927,577 + +0.4 927,578 - +0.3 927,578 - +0.8 927,578 - +1.6 927,578 - -0.6 927,578 - -0.6 927,578 - -0.0 927,578 - -1.8 927,578 - -0.6 927,578 - -0.2 927,578 - -0.3 927,578 - -0.8 927,579 + +1.6 927,580 - -0.1 927,580 - -0.3 927,580 - +0.8 927,580 - +1.3 927,580 - -0.1 927,580 - -0.8 927,663 - -2.2 927,722 + +0.3 927,722 + -1.1 927,722 + -1.1 927,723 - -0.5 927,723 - -0.7 927,723 - +0.0 927,790 + -0.2 927,793 + -0.8 927,793 + -1.2 927,793 + -0.8 927,793 + +0.8 927,793 + -2.0 927,793 + -0.4 927,793 + +0.0 927,793 + -0.2 927,793 + -1.2 927,794 - +0.0 927,794 - -2.2 927,794 - -0.4 927,794 - -0.2 927,794 - -0.2 927,794 - +0.4 927,794 - -0.2 927,831 - -0.1 928,075 + HGI48_RS04430 0.42 +1.9 928,075 + HGI48_RS04430 0.42 +1.1 928,076 - HGI48_RS04430 0.42 +0.5 928,079 + HGI48_RS04430 0.43 -1.6 928,079 + HGI48_RS04430 0.43 +0.3 928,079 + -0.8 928,079 + HGI48_RS04430 0.43 -1.5 928,079 + HGI48_RS04430 0.43 +0.0 928,079 + HGI48_RS04430 0.43 -0.2 928,079 + HGI48_RS04430 0.43 -0.4 928,079 + HGI48_RS04430 0.43 +0.5 928,079 + HGI48_RS04430 0.43 +0.4 928,079 + HGI48_RS04430 0.43 +1.5 928,079 + HGI48_RS04430 0.43 +0.0 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + HGI48_RS04430 0.43 -0.5 928,079 + +0.2 928,079 + HGI48_RS04430 0.43 +0.4 928,080 - HGI48_RS04430 0.43 -0.9 928,080 - HGI48_RS04430 0.43 +1.0 928,080 - -0.8 928,080 - HGI48_RS04430 0.43 -2.5 928,080 - HGI48_RS04430 0.43 -1.5 928,080 - HGI48_RS04430 0.43 -0.3 928,080 - HGI48_RS04430 0.43 -0.4 928,080 - HGI48_RS04430 0.43 +0.5 928,080 - HGI48_RS04430 0.43 -0.4 928,118 + HGI48_RS04430 0.50 +0.1 928,145 + HGI48_RS04430 0.54 -0.5 928,145 + HGI48_RS04430 0.54 -1.0 928,145 + HGI48_RS04430 0.54 -1.0 928,146 - HGI48_RS04430 0.55 +0.7 928,146 - +2.4 928,146 - +1.2 928,146 - HGI48_RS04430 0.55 -0.3 928,151 + -0.8 928,260 + HGI48_RS04430 0.75 -0.2 928,260 + HGI48_RS04430 0.75 -2.3 928,260 + HGI48_RS04430 0.75 -0.3 928,261 - +1.4 928,392 + +0.5 928,392 + +1.4 928,392 + +1.0 928,392 + +1.7 928,419 + -0.3 928,419 + -0.5 928,419 + +1.2 928,420 - -1.0 928,422 + +0.0 928,422 + -0.3 928,423 - -2.2 928,423 - +0.1 928,423 - +0.4 928,423 - +0.0 928,430 + +1.5 928,476 + -1.2 928,480 + +1.1 928,480 + +1.0 928,480 + -1.8 928,480 + +0.1 928,480 + +0.0 928,480 + -0.2 928,481 - -1.1 928,481 - +1.2 928,533 + -0.4 928,533 + +0.1 928,534 - -0.5 928,534 - -0.5 928,534 - -0.5 928,557 + -1.2
Or see this region's nucleotide sequence