Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04395 and HGI48_RS04400 are separated by 83 nucleotides HGI48_RS04400 and HGI48_RS04405 are separated by 357 nucleotides
HGI48_RS04395: HGI48_RS04395 - Dyp-type peroxidase, at 920,744 to 921,643
_RS04395
HGI48_RS04400: HGI48_RS04400 - cysteine synthase CysM, at 921,727 to 922,608
_RS04400
HGI48_RS04405: HGI48_RS04405 - acetylxylan esterase, at 922,966 to 923,769
_RS04405
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.741 kb on + strand at 920.741 kb on + strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.811 kb on + strand at 920.812 kb on - strand at 920.845 kb on + strand at 920.846 kb on - strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand at 921.251 kb on + strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.453 kb on - strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.494 kb on + strand, within HGI48_RS04395 at 921.495 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand at 921.510 kb on - strand, within HGI48_RS04395 at 921.581 kb on - strand at 921.602 kb on + strand at 921.603 kb on - strand at 921.603 kb on - strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.641 kb on + strand at 921.658 kb on - strand at 921.757 kb on - strand at 921.773 kb on + strand at 921.773 kb on + strand at 922.043 kb on - strand, within HGI48_RS04400 at 922.319 kb on + strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.373 kb on - strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.383 kb on + strand, within HGI48_RS04400 at 922.404 kb on - strand, within HGI48_RS04400 at 922.414 kb on - strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand at 922.420 kb on - strand at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.634 kb on - strand at 922.635 kb on + strand at 922.636 kb on - strand at 922.636 kb on - strand at 922.727 kb on + strand at 922.744 kb on + strand at 922.758 kb on + strand at 922.758 kb on + strand at 922.758 kb on + strand at 922.759 kb on - strand at 922.759 kb on - strand at 922.780 kb on + strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.788 kb on + strand at 922.855 kb on - strand at 922.855 kb on - strand at 922.894 kb on + strand at 922.894 kb on + strand at 922.915 kb on + strand at 922.915 kb on + strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.923 kb on + strand at 922.923 kb on + strand at 922.924 kb on - strand at 922.955 kb on - strand at 923.037 kb on + strand at 923.038 kb on - strand at 923.073 kb on + strand, within HGI48_RS04405 at 923.073 kb on + strand, within HGI48_RS04405 at 923.074 kb on - strand, within HGI48_RS04405 at 923.089 kb on + strand, within HGI48_RS04405 at 923.089 kb on + strand, within HGI48_RS04405 at 923.118 kb on + strand, within HGI48_RS04405 at 923.125 kb on - strand, within HGI48_RS04405 at 923.125 kb on - strand at 923.125 kb on - strand, within HGI48_RS04405 at 923.218 kb on + strand at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.223 kb on + strand, within HGI48_RS04405 at 923.223 kb on + strand, within HGI48_RS04405 at 923.224 kb on - strand, within HGI48_RS04405 at 923.260 kb on + strand, within HGI48_RS04405 at 923.260 kb on + strand, within HGI48_RS04405 at 923.261 kb on - strand at 923.285 kb on + strand, within HGI48_RS04405 at 923.285 kb on + strand, within HGI48_RS04405 at 923.286 kb on - strand, within HGI48_RS04405 at 923.286 kb on - strand at 923.341 kb on + strand, within HGI48_RS04405 at 923.352 kb on + strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.368 kb on - strand, within HGI48_RS04405 at 923.433 kb on + strand at 923.433 kb on + strand, within HGI48_RS04405 at 923.433 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand at 923.455 kb on + strand, within HGI48_RS04405 at 923.455 kb on + strand, within HGI48_RS04405 at 923.456 kb on - strand, within HGI48_RS04405 at 923.456 kb on - strand, within HGI48_RS04405 at 923.456 kb on - strand at 923.478 kb on + strand, within HGI48_RS04405 at 923.499 kb on + strand, within HGI48_RS04405 at 923.500 kb on - strand, within HGI48_RS04405 at 923.562 kb on + strand, within HGI48_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 920,741 + -0.9 920,741 + -0.8 920,742 - -0.8 920,742 - -1.5 920,742 - -1.5 920,742 - -1.2 920,811 + -1.2 920,812 - +1.0 920,845 + +0.8 920,846 - HGI48_RS04395 0.11 -0.8 921,251 + HGI48_RS04395 0.56 -2.3 921,251 + HGI48_RS04395 0.56 -3.2 921,251 + HGI48_RS04395 0.56 -0.1 921,251 + HGI48_RS04395 0.56 -1.8 921,251 + -0.8 921,251 + HGI48_RS04395 0.56 -1.3 921,252 - HGI48_RS04395 0.56 -3.6 921,252 - HGI48_RS04395 0.56 -1.8 921,252 - HGI48_RS04395 0.56 +0.6 921,252 - +1.2 921,252 - HGI48_RS04395 0.56 -1.8 921,252 - +1.6 921,252 - HGI48_RS04395 0.56 -0.2 921,252 - HGI48_RS04395 0.56 +0.5 921,453 - HGI48_RS04395 0.79 -0.8 921,482 + HGI48_RS04395 0.82 -3.0 921,482 + HGI48_RS04395 0.82 -1.2 921,494 + HGI48_RS04395 0.83 -2.8 921,495 - HGI48_RS04395 0.83 -1.2 921,510 - HGI48_RS04395 0.85 -3.0 921,510 - -0.2 921,510 - HGI48_RS04395 0.85 -1.5 921,581 - -2.6 921,602 + -1.2 921,603 - -0.8 921,603 - -1.5 921,639 + -0.5 921,639 + -0.8 921,639 + -0.0 921,640 - -2.7 921,640 - -2.3 921,640 - -0.8 921,640 - -0.8 921,641 + -0.3 921,658 - +0.5 921,757 - -0.8 921,773 + -0.2 921,773 + +0.4 922,043 - HGI48_RS04400 0.36 -0.3 922,319 + HGI48_RS04400 0.67 -1.5 922,320 - HGI48_RS04400 0.67 -0.2 922,320 - HGI48_RS04400 0.67 -1.5 922,372 + HGI48_RS04400 0.73 -2.0 922,372 + HGI48_RS04400 0.73 -0.4 922,372 + HGI48_RS04400 0.73 -0.3 922,373 - HGI48_RS04400 0.73 +0.1 922,374 + HGI48_RS04400 0.73 +0.2 922,374 + HGI48_RS04400 0.73 +2.0 922,374 + HGI48_RS04400 0.73 +0.6 922,374 + HGI48_RS04400 0.73 -2.5 922,374 + HGI48_RS04400 0.73 -0.6 922,383 + HGI48_RS04400 0.74 +0.1 922,404 - HGI48_RS04400 0.77 +0.1 922,414 - HGI48_RS04400 0.78 -1.5 922,419 + HGI48_RS04400 0.78 -1.0 922,419 + HGI48_RS04400 0.78 -3.1 922,419 + HGI48_RS04400 0.78 +0.1 922,419 + HGI48_RS04400 0.78 -0.8 922,419 + HGI48_RS04400 0.78 -0.1 922,419 + HGI48_RS04400 0.78 +0.8 922,419 + +2.2 922,420 - +0.8 922,420 - HGI48_RS04400 0.79 -0.8 922,420 - HGI48_RS04400 0.79 -0.5 922,420 - HGI48_RS04400 0.79 -0.2 922,420 - HGI48_RS04400 0.79 -0.4 922,634 - -0.2 922,635 + +1.2 922,636 - +1.0 922,636 - +0.4 922,727 + +0.1 922,744 + -1.0 922,758 + -0.2 922,758 + -1.2 922,758 + -0.6 922,759 - -0.6 922,759 - +1.3 922,780 + +0.8 922,781 - +0.1 922,781 - +0.7 922,781 - +0.5 922,781 - -0.4 922,788 + -0.1 922,855 - +1.3 922,855 - -0.5 922,894 + -0.8 922,894 + -1.2 922,915 + +1.4 922,915 + -0.1 922,916 - -0.2 922,916 - -0.2 922,916 - -1.2 922,916 - -0.2 922,917 + +0.2 922,917 + +0.8 922,917 + -0.8 922,917 + -0.5 922,917 + +0.4 922,917 + +1.1 922,917 + -0.1 922,918 - -0.2 922,918 - +0.4 922,918 - +0.2 922,918 - -1.5 922,918 - -0.2 922,918 - -0.2 922,918 - +1.4 922,918 - +0.1 922,923 + +0.3 922,923 + -0.8 922,924 - -0.8 922,955 - +0.1 923,037 + +0.8 923,038 - +1.2 923,073 + HGI48_RS04405 0.13 -0.2 923,073 + HGI48_RS04405 0.13 -1.2 923,074 - HGI48_RS04405 0.13 +2.1 923,089 + HGI48_RS04405 0.15 +1.1 923,089 + HGI48_RS04405 0.15 -0.8 923,118 + HGI48_RS04405 0.19 +0.3 923,125 - HGI48_RS04405 0.20 -0.8 923,125 - +0.8 923,125 - HGI48_RS04405 0.20 -0.2 923,218 + -0.8 923,218 + HGI48_RS04405 0.31 +0.1 923,218 + HGI48_RS04405 0.31 -3.0 923,218 + HGI48_RS04405 0.31 +1.5 923,218 + HGI48_RS04405 0.31 +1.6 923,218 + HGI48_RS04405 0.31 -0.2 923,218 + HGI48_RS04405 0.31 +0.2 923,219 - HGI48_RS04405 0.31 -0.2 923,219 - HGI48_RS04405 0.31 +0.0 923,219 - HGI48_RS04405 0.31 -1.3 923,219 - HGI48_RS04405 0.31 +0.0 923,219 - HGI48_RS04405 0.31 +0.7 923,219 - HGI48_RS04405 0.31 -0.2 923,219 - HGI48_RS04405 0.31 +1.4 923,223 + HGI48_RS04405 0.32 +0.6 923,223 + HGI48_RS04405 0.32 -0.8 923,224 - HGI48_RS04405 0.32 +1.3 923,260 + HGI48_RS04405 0.37 -0.4 923,260 + HGI48_RS04405 0.37 -0.2 923,261 - -0.8 923,285 + HGI48_RS04405 0.40 -0.8 923,285 + HGI48_RS04405 0.40 -0.5 923,286 - HGI48_RS04405 0.40 +0.8 923,286 - +0.8 923,341 + HGI48_RS04405 0.47 +1.2 923,352 + HGI48_RS04405 0.48 -1.3 923,353 - HGI48_RS04405 0.48 +0.1 923,353 - HGI48_RS04405 0.48 -2.3 923,353 - HGI48_RS04405 0.48 +0.1 923,368 - HGI48_RS04405 0.50 +0.4 923,433 + -0.8 923,433 + HGI48_RS04405 0.58 +0.6 923,433 + HGI48_RS04405 0.58 -0.5 923,449 + HGI48_RS04405 0.60 +0.2 923,449 + HGI48_RS04405 0.60 +0.5 923,449 + -0.8 923,455 + HGI48_RS04405 0.61 -0.2 923,455 + HGI48_RS04405 0.61 +0.2 923,456 - HGI48_RS04405 0.61 +1.1 923,456 - HGI48_RS04405 0.61 -1.0 923,456 - +1.4 923,478 + HGI48_RS04405 0.64 -0.8 923,499 + HGI48_RS04405 0.66 +1.1 923,500 - HGI48_RS04405 0.66 +0.1 923,562 + HGI48_RS04405 0.74 -0.6
Or see this region's nucleotide sequence