Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04360 and HGI48_RS04365 are separated by 524 nucleotides HGI48_RS04365 and HGI48_RS04370 are separated by 446 nucleotides
HGI48_RS04360: HGI48_RS04360 - GNAT family acetyltransferase, at 913,948 to 914,373
_RS04360
HGI48_RS04365: HGI48_RS04365 - RpoE-regulated lipoprotein, at 914,898 to 915,506
_RS04365
HGI48_RS04370: HGI48_RS04370 - glycosyltransferase, at 915,953 to 917,227
_RS04370
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.932 kb on + strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.933 kb on - strand at 913.933 kb on - strand at 913.933 kb on - strand at 914.155 kb on + strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.179 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.300 kb on - strand, within HGI48_RS04360 at 914.314 kb on + strand at 914.314 kb on + strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.368 kb on + strand at 914.369 kb on - strand at 914.369 kb on - strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.530 kb on + strand at 914.612 kb on - strand at 914.612 kb on - strand at 914.644 kb on + strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.696 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.734 kb on - strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.858 kb on - strand at 914.858 kb on - strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.881 kb on - strand at 914.881 kb on - strand at 915.165 kb on + strand, within HGI48_RS04365 at 915.166 kb on - strand at 915.303 kb on + strand at 915.396 kb on + strand at 915.396 kb on + strand, within HGI48_RS04365 at 915.396 kb on + strand, within HGI48_RS04365 at 915.449 kb on + strand at 915.479 kb on - strand at 915.479 kb on - strand at 915.504 kb on + strand at 915.515 kb on + strand at 915.522 kb on + strand at 915.522 kb on + strand at 915.603 kb on + strand at 915.603 kb on + strand at 915.635 kb on + strand at 915.635 kb on + strand at 915.635 kb on + strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.651 kb on - strand at 915.682 kb on + strand at 915.757 kb on + strand at 915.758 kb on - strand at 915.758 kb on - strand at 915.758 kb on - strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.795 kb on - strand at 915.795 kb on - strand at 915.806 kb on + strand at 915.821 kb on + strand at 915.822 kb on - strand at 915.822 kb on - strand at 915.822 kb on - strand at 915.871 kb on + strand at 915.881 kb on - strand at 915.941 kb on + strand at 915.942 kb on - strand at 915.942 kb on - strand at 915.961 kb on + strand at 915.999 kb on - strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.231 kb on + strand at 916.231 kb on + strand, within HGI48_RS04370 at 916.231 kb on + strand, within HGI48_RS04370 at 916.231 kb on + strand, within HGI48_RS04370 at 916.232 kb on - strand, within HGI48_RS04370 at 916.232 kb on - strand, within HGI48_RS04370 at 916.311 kb on - strand, within HGI48_RS04370 at 916.311 kb on - strand, within HGI48_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 913,932 + +1.0 913,932 + -0.2 913,932 + -0.4 913,933 - -2.2 913,933 - -0.1 913,933 - -0.2 914,155 + HGI48_RS04360 0.49 -1.2 914,156 - HGI48_RS04360 0.49 +0.2 914,156 - HGI48_RS04360 0.49 +0.5 914,156 - HGI48_RS04360 0.49 +0.4 914,156 - HGI48_RS04360 0.49 -2.0 914,158 + HGI48_RS04360 0.49 +0.5 914,158 + HGI48_RS04360 0.49 -0.4 914,158 + HGI48_RS04360 0.49 -1.8 914,158 + HGI48_RS04360 0.49 +0.6 914,158 + HGI48_RS04360 0.49 +0.6 914,159 - HGI48_RS04360 0.50 +1.2 914,159 - HGI48_RS04360 0.50 -0.6 914,159 - HGI48_RS04360 0.50 +0.1 914,159 - +2.2 914,159 - HGI48_RS04360 0.50 +0.1 914,159 - HGI48_RS04360 0.50 +1.1 914,179 + HGI48_RS04360 0.54 -0.2 914,299 + HGI48_RS04360 0.82 +0.3 914,299 + HGI48_RS04360 0.82 -2.5 914,299 + HGI48_RS04360 0.82 -2.6 914,300 - HGI48_RS04360 0.83 -0.2 914,314 + +2.7 914,314 + HGI48_RS04360 0.86 -0.2 914,315 - HGI48_RS04360 0.86 +0.1 914,315 - HGI48_RS04360 0.86 -0.3 914,368 + -0.4 914,369 - -2.0 914,369 - -1.5 914,430 + -1.2 914,430 + +0.2 914,430 + -0.3 914,431 - -0.4 914,431 - -0.0 914,431 - +0.5 914,530 + -0.6 914,612 - -0.4 914,612 - -0.2 914,644 + -0.3 914,645 - -0.4 914,645 - +0.1 914,645 - -2.0 914,645 - -1.0 914,696 + +1.4 914,733 + -0.4 914,733 + +2.2 914,733 + +0.3 914,733 + +1.3 914,734 - +0.8 914,857 + +0.2 914,857 + -0.5 914,857 + -1.0 914,858 - -0.1 914,858 - +0.6 914,880 + -1.3 914,880 + -0.8 914,880 + -1.5 914,880 + -1.2 914,880 + +0.3 914,881 - -0.1 914,881 - -0.8 915,165 + HGI48_RS04365 0.44 -0.9 915,166 - +2.0 915,303 + -0.8 915,396 + +0.8 915,396 + HGI48_RS04365 0.82 -0.5 915,396 + HGI48_RS04365 0.82 -0.8 915,449 + +0.2 915,479 - -1.0 915,479 - -1.8 915,504 + +0.5 915,515 + -0.9 915,522 + +0.8 915,522 + -1.5 915,603 + +0.5 915,603 + -1.0 915,635 + -2.9 915,635 + -1.6 915,635 + +0.3 915,636 - +0.4 915,636 - +0.8 915,636 - +0.1 915,636 - -2.0 915,651 - +0.7 915,682 + -1.8 915,757 + +1.7 915,758 - +2.0 915,758 - -1.6 915,758 - +1.0 915,769 + +0.8 915,769 + -0.6 915,769 + +0.5 915,769 + +0.2 915,770 - +1.1 915,770 - -1.8 915,770 - -1.1 915,770 - -0.7 915,794 + +0.6 915,794 + -0.6 915,794 + -0.5 915,795 - +0.4 915,795 - +0.8 915,806 + +0.1 915,821 + -2.2 915,822 - +1.1 915,822 - -1.3 915,822 - -1.2 915,871 + -1.2 915,881 - -0.8 915,941 + -0.3 915,942 - +1.1 915,942 - +1.0 915,961 + -0.4 915,999 - -0.6 916,003 + +0.3 916,003 + -1.8 916,003 + +0.3 916,003 + +1.6 916,003 + -1.2 916,004 - +1.3 916,004 - -0.2 916,004 - -0.2 916,004 - -1.5 916,004 - +0.1 916,004 - -1.5 916,004 - -0.2 916,231 + +0.2 916,231 + HGI48_RS04370 0.22 +0.6 916,231 + HGI48_RS04370 0.22 -0.2 916,231 + HGI48_RS04370 0.22 -0.3 916,232 - HGI48_RS04370 0.22 +0.8 916,232 - HGI48_RS04370 0.22 -2.2 916,311 - HGI48_RS04370 0.28 -1.5 916,311 - HGI48_RS04370 0.28 -0.2
Or see this region's nucleotide sequence