Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04345 and HGI48_RS04350 are separated by 57 nucleotides HGI48_RS04350 and HGI48_RS04355 overlap by 4 nucleotides HGI48_RS04355 and HGI48_RS04360 are separated by 213 nucleotides
HGI48_RS04345: HGI48_RS04345 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 910,013 to 912,292
_RS04345
HGI48_RS04350: HGI48_RS04350 - YaiI/YqxD family protein, at 912,350 to 912,799
_RS04350
HGI48_RS04355: HGI48_RS04355 - oxygen-dependent coproporphyrinogen oxidase, at 912,796 to 913,734
_RS04355
HGI48_RS04360: HGI48_RS04360 - GNAT family acetyltransferase, at 913,948 to 914,373
_RS04360
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 911.803 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 912.131 kb on + strand at 912.131 kb on + strand at 912.131 kb on + strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.290 kb on + strand at 912.413 kb on + strand, within HGI48_RS04350 at 912.413 kb on + strand, within HGI48_RS04350 at 912.414 kb on - strand, within HGI48_RS04350 at 912.414 kb on - strand at 912.438 kb on - strand at 912.507 kb on + strand, within HGI48_RS04350 at 912.508 kb on - strand, within HGI48_RS04350 at 912.686 kb on - strand, within HGI48_RS04350 at 912.755 kb on + strand at 912.755 kb on + strand at 912.755 kb on + strand at 912.758 kb on + strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.861 kb on - strand at 913.007 kb on - strand, within HGI48_RS04355 at 913.221 kb on - strand, within HGI48_RS04355 at 913.242 kb on - strand, within HGI48_RS04355 at 913.251 kb on - strand, within HGI48_RS04355 at 913.363 kb on + strand, within HGI48_RS04355 at 913.428 kb on - strand, within HGI48_RS04355 at 913.568 kb on - strand, within HGI48_RS04355 at 913.636 kb on - strand at 913.688 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.745 kb on - strand at 913.772 kb on + strand at 913.772 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.786 kb on - strand at 913.788 kb on + strand at 913.788 kb on + strand at 913.794 kb on + strand at 913.794 kb on + strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.872 kb on - strand at 913.883 kb on - strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.933 kb on - strand at 913.933 kb on - strand at 913.933 kb on - strand at 914.155 kb on + strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.179 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.300 kb on - strand, within HGI48_RS04360 at 914.314 kb on + strand at 914.314 kb on + strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.368 kb on + strand at 914.369 kb on - strand at 914.369 kb on - strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.530 kb on + strand at 914.612 kb on - strand at 914.612 kb on - strand at 914.644 kb on + strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.696 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 911,803 + HGI48_RS04345 0.79 +0.4 911,807 + HGI48_RS04345 0.79 -0.6 911,807 + +1.2 911,807 + HGI48_RS04345 0.79 -0.1 911,807 + HGI48_RS04345 0.79 -2.5 911,807 + HGI48_RS04345 0.79 -0.1 911,808 - HGI48_RS04345 0.79 -0.2 911,808 - HGI48_RS04345 0.79 -0.5 911,808 - HGI48_RS04345 0.79 +0.4 912,131 + -0.5 912,131 + -0.8 912,131 + -0.6 912,132 - +0.8 912,132 - -0.2 912,132 - -0.6 912,132 - -0.2 912,132 - -0.3 912,290 + -0.8 912,413 + HGI48_RS04350 0.14 +0.8 912,413 + HGI48_RS04350 0.14 -0.2 912,414 - HGI48_RS04350 0.14 -0.3 912,414 - +0.8 912,438 - +1.2 912,507 + HGI48_RS04350 0.35 +0.1 912,508 - HGI48_RS04350 0.35 -2.8 912,686 - HGI48_RS04350 0.75 -0.9 912,755 + +0.0 912,755 + -1.2 912,755 + -0.9 912,758 + +0.2 912,759 - -2.2 912,759 - +0.2 912,759 - +1.4 912,759 - +0.8 912,759 - +0.4 912,861 - -1.3 913,007 - HGI48_RS04355 0.22 +0.2 913,221 - HGI48_RS04355 0.45 -0.2 913,242 - HGI48_RS04355 0.47 -1.8 913,251 - HGI48_RS04355 0.48 -2.5 913,363 + HGI48_RS04355 0.60 -1.8 913,428 - HGI48_RS04355 0.67 +0.7 913,568 - HGI48_RS04355 0.82 -1.8 913,636 - +1.2 913,688 - -0.8 913,735 - -1.0 913,735 - -1.0 913,735 - -1.2 913,745 - -0.5 913,772 + +0.2 913,772 + -0.5 913,785 + -1.0 913,785 + -0.3 913,785 + +1.1 913,785 + -2.2 913,786 - -2.9 913,788 + -0.1 913,788 + +0.8 913,794 + +1.0 913,794 + -0.2 913,795 - +0.6 913,795 - -0.3 913,795 - -1.2 913,795 - -1.0 913,795 - -1.1 913,795 - +0.8 913,795 - -0.3 913,797 + -0.2 913,797 + +1.0 913,797 + +1.8 913,797 + -1.0 913,797 + +0.8 913,797 + -0.6 913,797 + -0.6 913,798 - +0.8 913,798 - +0.8 913,798 - -1.2 913,798 - +0.5 913,798 - -1.2 913,798 - +0.3 913,798 - +1.0 913,798 - +0.2 913,872 - -1.2 913,883 - +0.8 913,932 + +1.0 913,932 + -0.2 913,932 + -0.4 913,933 - -2.2 913,933 - -0.1 913,933 - -0.2 914,155 + HGI48_RS04360 0.49 -1.2 914,156 - HGI48_RS04360 0.49 +0.2 914,156 - HGI48_RS04360 0.49 +0.5 914,156 - HGI48_RS04360 0.49 +0.4 914,156 - HGI48_RS04360 0.49 -2.0 914,158 + HGI48_RS04360 0.49 +0.5 914,158 + HGI48_RS04360 0.49 -0.4 914,158 + HGI48_RS04360 0.49 -1.8 914,158 + HGI48_RS04360 0.49 +0.6 914,158 + HGI48_RS04360 0.49 +0.6 914,159 - HGI48_RS04360 0.50 +1.2 914,159 - HGI48_RS04360 0.50 -0.6 914,159 - HGI48_RS04360 0.50 +0.1 914,159 - +2.2 914,159 - HGI48_RS04360 0.50 +0.1 914,159 - HGI48_RS04360 0.50 +1.1 914,179 + HGI48_RS04360 0.54 -0.2 914,299 + HGI48_RS04360 0.82 +0.3 914,299 + HGI48_RS04360 0.82 -2.5 914,299 + HGI48_RS04360 0.82 -2.6 914,300 - HGI48_RS04360 0.83 -0.2 914,314 + +2.7 914,314 + HGI48_RS04360 0.86 -0.2 914,315 - HGI48_RS04360 0.86 +0.1 914,315 - HGI48_RS04360 0.86 -0.3 914,368 + -0.4 914,369 - -2.0 914,369 - -1.5 914,430 + -1.2 914,430 + +0.2 914,430 + -0.3 914,431 - -0.4 914,431 - -0.0 914,431 - +0.5 914,530 + -0.6 914,612 - -0.4 914,612 - -0.2 914,644 + -0.3 914,645 - -0.4 914,645 - +0.1 914,645 - -2.0 914,645 - -1.0 914,696 + +1.4 914,733 + -0.4 914,733 + +2.2 914,733 + +0.3 914,733 + +1.3 914,734 - +0.8
Or see this region's nucleotide sequence