Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04320 and HGI48_RS04325 are separated by 83 nucleotides HGI48_RS04325 and HGI48_RS04330 are separated by 172 nucleotides
HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513
_RS04320
HGI48_RS04325: HGI48_RS04325 - NAD(+) kinase, at 905,597 to 906,475
_RS04325
HGI48_RS04330: HGI48_RS04330 - nucleotide exchange factor GrpE, at 906,648 to 907,235
_RS04330
Position (kb)
905
906
907 Strain fitness (log2 ratio)
-2
-1
0
1 at 904.618 kb on + strand, within HGI48_RS04320 at 904.619 kb on - strand, within HGI48_RS04320 at 904.873 kb on + strand, within HGI48_RS04320 at 904.874 kb on - strand, within HGI48_RS04320 at 904.940 kb on - strand, within HGI48_RS04320 at 905.049 kb on + strand, within HGI48_RS04320 at 905.049 kb on + strand at 905.050 kb on - strand at 905.050 kb on - strand, within HGI48_RS04320 at 905.068 kb on + strand, within HGI48_RS04320 at 905.104 kb on - strand, within HGI48_RS04320 at 905.399 kb on + strand at 905.517 kb on - strand at 905.526 kb on + strand at 905.531 kb on - strand at 905.546 kb on + strand at 905.550 kb on + strand at 905.551 kb on - strand at 905.573 kb on - strand at 905.578 kb on - strand at 905.592 kb on + strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.543 kb on + strand at 906.543 kb on + strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.614 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.234 kb on - strand at 907.234 kb on - strand at 907.329 kb on + strand at 907.329 kb on + strand at 907.347 kb on + strand at 907.374 kb on + strand at 907.375 kb on - strand at 907.408 kb on + strand at 907.409 kb on - strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.426 kb on + strand at 907.427 kb on - strand at 907.431 kb on - strand at 907.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 904,618 + HGI48_RS04320 0.46 +0.6 904,619 - HGI48_RS04320 0.46 -1.5 904,873 + HGI48_RS04320 0.61 -0.1 904,874 - HGI48_RS04320 0.61 +1.1 904,940 - HGI48_RS04320 0.65 -1.8 905,049 + HGI48_RS04320 0.72 -0.8 905,049 + -0.2 905,050 - +1.4 905,050 - HGI48_RS04320 0.72 -0.2 905,068 + HGI48_RS04320 0.73 -0.6 905,104 - HGI48_RS04320 0.75 -1.5 905,399 + +0.3 905,517 - -1.5 905,526 + -1.5 905,531 - -0.6 905,546 + -0.1 905,550 + -0.8 905,551 - +0.5 905,573 - +0.8 905,578 - +0.1 905,592 + +0.8 906,487 - +0.0 906,487 - -1.5 906,487 - -0.1 906,487 - -1.2 906,543 + -0.2 906,543 + -1.5 906,544 - -0.5 906,544 - -0.9 906,544 - +0.0 906,544 - -1.2 906,544 - -0.3 906,544 - -0.8 906,544 - -1.2 906,614 + +0.8 907,233 + -1.8 907,233 + -0.7 907,233 + -0.5 907,233 + -0.5 907,234 - -1.5 907,234 - +0.8 907,329 + +0.8 907,329 + +1.4 907,347 + -0.9 907,374 + -0.2 907,375 - -0.0 907,408 + +0.4 907,409 - +0.4 907,412 + -0.1 907,412 + +0.6 907,412 + +0.1 907,412 + +0.2 907,426 + +0.2 907,427 - -2.5 907,431 - +0.6 907,431 - +0.8
Or see this region's nucleotide sequence