Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03730 and HGI48_RS03735 are separated by 44 nucleotides HGI48_RS03735 and HGI48_RS03740 are separated by 528 nucleotides
HGI48_RS03730: HGI48_RS03730 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 792,313 to 793,824
_RS03730
HGI48_RS03735: HGI48_RS03735 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 793,869 to 795,800
_RS03735
HGI48_RS03740: HGI48_RS03740 - inositol 2-dehydrogenase, at 796,329 to 797,315
_RS03740
Position (kb) 793
794
795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.906 kb on - strand, within HGI48_RS03730 at 792.910 kb on - strand at 792.910 kb on - strand at 792.910 kb on - strand, within HGI48_RS03730 at 793.006 kb on + strand, within HGI48_RS03730 at 793.006 kb on + strand, within HGI48_RS03730 at 793.007 kb on - strand, within HGI48_RS03730 at 793.007 kb on - strand, within HGI48_RS03730 at 793.012 kb on + strand, within HGI48_RS03730 at 793.013 kb on - strand, within HGI48_RS03730 at 793.074 kb on + strand, within HGI48_RS03730 at 793.074 kb on + strand, within HGI48_RS03730 at 793.074 kb on + strand, within HGI48_RS03730 at 793.074 kb on + strand, within HGI48_RS03730 at 793.075 kb on - strand, within HGI48_RS03730 at 793.075 kb on - strand, within HGI48_RS03730 at 793.325 kb on - strand at 793.326 kb on + strand, within HGI48_RS03730 at 793.327 kb on - strand, within HGI48_RS03730 at 793.327 kb on - strand, within HGI48_RS03730 at 793.405 kb on + strand, within HGI48_RS03730 at 793.405 kb on + strand, within HGI48_RS03730 at 793.406 kb on - strand, within HGI48_RS03730 at 793.406 kb on - strand, within HGI48_RS03730 at 793.406 kb on - strand, within HGI48_RS03730 at 793.406 kb on - strand, within HGI48_RS03730 at 793.457 kb on - strand at 793.544 kb on - strand at 793.563 kb on - strand, within HGI48_RS03730 at 793.629 kb on + strand, within HGI48_RS03730 at 793.708 kb on + strand at 793.709 kb on - strand at 793.709 kb on - strand at 793.733 kb on - strand at 793.822 kb on + strand at 793.874 kb on + strand at 793.874 kb on + strand at 793.874 kb on + strand at 793.875 kb on - strand at 793.875 kb on - strand at 793.875 kb on - strand at 793.926 kb on + strand at 793.926 kb on + strand at 793.926 kb on + strand at 793.926 kb on + strand at 794.058 kb on - strand at 794.121 kb on + strand, within HGI48_RS03735 at 794.121 kb on + strand, within HGI48_RS03735 at 794.195 kb on + strand, within HGI48_RS03735 at 794.291 kb on + strand at 794.291 kb on + strand, within HGI48_RS03735 at 794.291 kb on + strand, within HGI48_RS03735 at 794.292 kb on - strand, within HGI48_RS03735 at 794.294 kb on + strand, within HGI48_RS03735 at 794.485 kb on + strand, within HGI48_RS03735 at 794.636 kb on + strand, within HGI48_RS03735 at 794.636 kb on + strand, within HGI48_RS03735 at 794.637 kb on - strand, within HGI48_RS03735 at 795.090 kb on + strand, within HGI48_RS03735 at 795.143 kb on - strand, within HGI48_RS03735 at 795.143 kb on - strand, within HGI48_RS03735 at 795.240 kb on + strand, within HGI48_RS03735 at 795.240 kb on + strand, within HGI48_RS03735 at 795.240 kb on + strand, within HGI48_RS03735 at 795.241 kb on - strand, within HGI48_RS03735 at 795.241 kb on - strand, within HGI48_RS03735 at 795.252 kb on + strand, within HGI48_RS03735 at 795.252 kb on + strand, within HGI48_RS03735 at 795.253 kb on - strand, within HGI48_RS03735 at 795.253 kb on - strand, within HGI48_RS03735 at 795.258 kb on + strand, within HGI48_RS03735 at 795.258 kb on + strand, within HGI48_RS03735 at 795.273 kb on + strand, within HGI48_RS03735 at 795.274 kb on - strand, within HGI48_RS03735 at 795.274 kb on - strand, within HGI48_RS03735 at 795.327 kb on + strand, within HGI48_RS03735 at 795.328 kb on - strand, within HGI48_RS03735 at 795.351 kb on + strand, within HGI48_RS03735 at 795.351 kb on + strand, within HGI48_RS03735 at 795.352 kb on - strand, within HGI48_RS03735 at 795.352 kb on - strand, within HGI48_RS03735 at 795.403 kb on + strand, within HGI48_RS03735 at 795.446 kb on + strand, within HGI48_RS03735 at 795.446 kb on + strand, within HGI48_RS03735 at 795.446 kb on + strand, within HGI48_RS03735 at 795.446 kb on + strand, within HGI48_RS03735 at 795.447 kb on - strand, within HGI48_RS03735 at 795.447 kb on - strand, within HGI48_RS03735 at 795.772 kb on + strand at 795.772 kb on + strand at 795.773 kb on - strand at 795.773 kb on - strand at 795.795 kb on + strand at 795.795 kb on + strand at 795.795 kb on + strand at 795.796 kb on - strand at 795.796 kb on - strand at 795.798 kb on + strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.884 kb on + strand at 795.885 kb on - strand at 795.907 kb on - strand at 796.010 kb on - strand at 796.049 kb on - strand at 796.082 kb on + strand at 796.082 kb on + strand at 796.082 kb on + strand at 796.083 kb on - strand at 796.085 kb on + strand at 796.098 kb on + strand at 796.098 kb on + strand at 796.099 kb on - strand at 796.166 kb on + strand at 796.177 kb on + strand at 796.177 kb on + strand at 796.177 kb on + strand at 796.177 kb on + strand at 796.178 kb on - strand at 796.178 kb on - strand at 796.178 kb on - strand at 796.262 kb on + strand at 796.262 kb on + strand at 796.263 kb on - strand at 796.263 kb on - strand at 796.263 kb on - strand at 796.287 kb on + strand at 796.335 kb on - strand at 796.414 kb on - strand at 796.464 kb on + strand, within HGI48_RS03740 at 796.464 kb on + strand, within HGI48_RS03740 at 796.464 kb on + strand at 796.465 kb on - strand, within HGI48_RS03740 at 796.514 kb on - strand, within HGI48_RS03740 at 796.769 kb on + strand, within HGI48_RS03740 at 796.769 kb on + strand at 796.770 kb on - strand, within HGI48_RS03740 at 796.770 kb on - strand, within HGI48_RS03740
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 792,906 - HGI48_RS03730 0.39 +0.6 792,910 - +0.9 792,910 - +2.4 792,910 - HGI48_RS03730 0.39 +0.7 793,006 + HGI48_RS03730 0.46 -0.5 793,006 + HGI48_RS03730 0.46 -0.1 793,007 - HGI48_RS03730 0.46 -1.7 793,007 - HGI48_RS03730 0.46 -0.9 793,012 + HGI48_RS03730 0.46 -2.1 793,013 - HGI48_RS03730 0.46 -1.3 793,074 + HGI48_RS03730 0.50 -1.5 793,074 + HGI48_RS03730 0.50 -0.1 793,074 + HGI48_RS03730 0.50 -0.5 793,074 + HGI48_RS03730 0.50 -0.1 793,075 - HGI48_RS03730 0.50 -1.1 793,075 - HGI48_RS03730 0.50 +1.2 793,325 - +0.3 793,326 + HGI48_RS03730 0.67 +0.9 793,327 - HGI48_RS03730 0.67 -0.5 793,327 - HGI48_RS03730 0.67 +0.1 793,405 + HGI48_RS03730 0.72 +0.5 793,405 + HGI48_RS03730 0.72 -0.9 793,406 - HGI48_RS03730 0.72 -0.7 793,406 - HGI48_RS03730 0.72 -1.3 793,406 - HGI48_RS03730 0.72 -0.7 793,406 - HGI48_RS03730 0.72 +0.2 793,457 - +0.9 793,544 - +1.9 793,563 - HGI48_RS03730 0.83 +0.3 793,629 + HGI48_RS03730 0.87 +0.9 793,708 + -0.8 793,709 - +0.3 793,709 - +0.2 793,733 - +0.2 793,822 + +2.4 793,874 + -0.1 793,874 + -0.3 793,874 + -0.7 793,875 - -0.1 793,875 - -0.1 793,875 - -0.1 793,926 + -0.2 793,926 + -0.1 793,926 + +0.2 793,926 + -0.5 794,058 - -0.7 794,121 + HGI48_RS03735 0.13 -0.1 794,121 + HGI48_RS03735 0.13 +0.6 794,195 + HGI48_RS03735 0.17 -0.1 794,291 + +0.3 794,291 + HGI48_RS03735 0.22 -2.9 794,291 + HGI48_RS03735 0.22 -1.5 794,292 - HGI48_RS03735 0.22 -1.3 794,294 + HGI48_RS03735 0.22 -1.3 794,485 + HGI48_RS03735 0.32 -1.3 794,636 + HGI48_RS03735 0.40 +0.2 794,636 + HGI48_RS03735 0.40 -1.5 794,637 - HGI48_RS03735 0.40 +0.4 795,090 + HGI48_RS03735 0.63 -0.9 795,143 - HGI48_RS03735 0.66 +1.2 795,143 - HGI48_RS03735 0.66 -0.0 795,240 + HGI48_RS03735 0.71 -0.1 795,240 + HGI48_RS03735 0.71 -0.7 795,240 + HGI48_RS03735 0.71 -0.5 795,241 - HGI48_RS03735 0.71 +0.2 795,241 - HGI48_RS03735 0.71 +0.6 795,252 + HGI48_RS03735 0.72 -0.5 795,252 + HGI48_RS03735 0.72 +0.9 795,253 - HGI48_RS03735 0.72 -0.6 795,253 - HGI48_RS03735 0.72 -0.2 795,258 + HGI48_RS03735 0.72 -0.9 795,258 + HGI48_RS03735 0.72 +0.4 795,273 + HGI48_RS03735 0.73 +0.4 795,274 - HGI48_RS03735 0.73 +0.2 795,274 - HGI48_RS03735 0.73 +0.1 795,327 + HGI48_RS03735 0.75 -0.3 795,328 - HGI48_RS03735 0.76 -1.3 795,351 + HGI48_RS03735 0.77 -0.0 795,351 + HGI48_RS03735 0.77 +0.1 795,352 - HGI48_RS03735 0.77 -0.7 795,352 - HGI48_RS03735 0.77 +0.9 795,403 + HGI48_RS03735 0.79 +0.2 795,446 + HGI48_RS03735 0.82 -0.5 795,446 + HGI48_RS03735 0.82 -0.1 795,446 + HGI48_RS03735 0.82 -0.3 795,446 + HGI48_RS03735 0.82 +0.7 795,447 - HGI48_RS03735 0.82 +0.0 795,447 - HGI48_RS03735 0.82 -0.5 795,772 + +1.4 795,772 + -1.1 795,773 - -2.1 795,773 - -1.5 795,795 + -0.1 795,795 + -2.6 795,795 + -0.5 795,796 - -0.6 795,796 - +0.3 795,798 + +0.3 795,799 - -0.1 795,799 - -0.2 795,799 - +0.2 795,799 - -0.4 795,884 + -0.7 795,885 - -1.9 795,907 - +0.3 796,010 - -0.1 796,049 - -1.0 796,082 + +0.1 796,082 + -0.4 796,082 + +0.7 796,083 - -1.4 796,085 + -2.3 796,098 + -0.5 796,098 + -0.4 796,099 - +0.6 796,166 + -2.3 796,177 + -0.7 796,177 + +0.3 796,177 + -0.7 796,177 + -0.6 796,178 - +0.9 796,178 - +0.2 796,178 - +0.9 796,262 + +0.4 796,262 + +0.1 796,263 - -0.1 796,263 - -1.7 796,263 - +1.3 796,287 + +0.0 796,335 - -1.2 796,414 - +1.9 796,464 + HGI48_RS03740 0.14 +0.7 796,464 + HGI48_RS03740 0.14 +0.0 796,464 + +1.9 796,465 - HGI48_RS03740 0.14 -2.3 796,514 - HGI48_RS03740 0.19 +0.4 796,769 + HGI48_RS03740 0.45 +0.2 796,769 + +0.3 796,770 - HGI48_RS03740 0.45 +0.2 796,770 - HGI48_RS03740 0.45 +0.1
Or see this region's nucleotide sequence