Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03565

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03560 and HGI48_RS03565 are separated by 210 nucleotidesHGI48_RS03565 and HGI48_RS03570 are separated by 47 nucleotides HGI48_RS03560: HGI48_RS03560 - NCS2 family permease, at 750,728 to 752,095 _RS03560 HGI48_RS03565: HGI48_RS03565 - Na+/H+ antiporter, at 752,306 to 753,952 _RS03565 HGI48_RS03570: HGI48_RS03570 - cation/acetate symporter ActP, at 754,000 to 755,658 _RS03570 Position (kb) 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 751.422 kb on - strand, within HGI48_RS03560at 751.422 kb on - strand, within HGI48_RS03560at 751.422 kb on - strand, within HGI48_RS03560at 751.422 kb on - strand, within HGI48_RS03560at 751.490 kb on - strand, within HGI48_RS03560at 751.703 kb on + strand, within HGI48_RS03560at 751.704 kb on - strand, within HGI48_RS03560at 751.704 kb on - strandat 751.808 kb on + strand, within HGI48_RS03560at 751.808 kb on + strand, within HGI48_RS03560at 751.809 kb on - strand, within HGI48_RS03560at 751.847 kb on + strand, within HGI48_RS03560at 751.847 kb on + strand, within HGI48_RS03560at 751.847 kb on + strand, within HGI48_RS03560at 751.847 kb on + strand, within HGI48_RS03560at 751.848 kb on - strandat 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strandat 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.848 kb on - strand, within HGI48_RS03560at 751.951 kb on + strand, within HGI48_RS03560at 751.951 kb on + strand, within HGI48_RS03560at 751.952 kb on - strand, within HGI48_RS03560at 752.043 kb on + strandat 752.043 kb on + strandat 752.044 kb on - strandat 752.044 kb on - strandat 752.048 kb on - strandat 752.072 kb on + strandat 752.203 kb on - strandat 752.204 kb on + strandat 752.204 kb on + strandat 752.205 kb on - strandat 752.205 kb on - strandat 752.205 kb on - strandat 752.476 kb on + strand, within HGI48_RS03565at 752.476 kb on + strand, within HGI48_RS03565at 752.476 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.548 kb on + strand, within HGI48_RS03565at 752.549 kb on - strand, within HGI48_RS03565at 752.549 kb on - strandat 752.549 kb on - strand, within HGI48_RS03565at 752.549 kb on - strand, within HGI48_RS03565at 752.591 kb on - strandat 752.748 kb on + strand, within HGI48_RS03565at 752.749 kb on - strand, within HGI48_RS03565at 752.749 kb on - strand, within HGI48_RS03565at 752.863 kb on - strand, within HGI48_RS03565at 752.912 kb on + strand, within HGI48_RS03565at 752.912 kb on + strandat 752.912 kb on + strandat 752.913 kb on - strand, within HGI48_RS03565at 752.973 kb on + strandat 752.973 kb on + strand, within HGI48_RS03565at 752.974 kb on - strand, within HGI48_RS03565at 752.974 kb on - strand, within HGI48_RS03565at 752.976 kb on + strand, within HGI48_RS03565at 752.976 kb on + strand, within HGI48_RS03565at 752.977 kb on - strand, within HGI48_RS03565at 753.002 kb on + strand, within HGI48_RS03565at 753.002 kb on + strand, within HGI48_RS03565at 753.003 kb on - strand, within HGI48_RS03565at 753.003 kb on - strand, within HGI48_RS03565at 753.064 kb on + strand, within HGI48_RS03565at 753.065 kb on - strand, within HGI48_RS03565at 753.275 kb on + strand, within HGI48_RS03565at 753.275 kb on + strand, within HGI48_RS03565at 753.275 kb on + strand, within HGI48_RS03565at 753.275 kb on + strand, within HGI48_RS03565at 753.275 kb on + strand, within HGI48_RS03565at 753.276 kb on - strand, within HGI48_RS03565at 753.276 kb on - strand, within HGI48_RS03565at 753.276 kb on - strand, within HGI48_RS03565at 753.326 kb on + strand, within HGI48_RS03565at 753.327 kb on - strand, within HGI48_RS03565at 753.336 kb on - strand, within HGI48_RS03565at 753.339 kb on + strand, within HGI48_RS03565at 753.339 kb on + strand, within HGI48_RS03565at 753.339 kb on + strand, within HGI48_RS03565at 753.340 kb on - strandat 753.340 kb on - strand, within HGI48_RS03565at 753.372 kb on - strand, within HGI48_RS03565at 753.441 kb on + strandat 753.441 kb on + strand, within HGI48_RS03565at 753.441 kb on + strand, within HGI48_RS03565at 753.441 kb on + strand, within HGI48_RS03565at 753.442 kb on - strand, within HGI48_RS03565at 753.445 kb on + strand, within HGI48_RS03565at 753.446 kb on - strandat 753.446 kb on - strand, within HGI48_RS03565at 753.446 kb on - strand, within HGI48_RS03565at 753.446 kb on - strand, within HGI48_RS03565at 753.502 kb on + strand, within HGI48_RS03565at 753.574 kb on + strand, within HGI48_RS03565at 753.574 kb on + strand, within HGI48_RS03565at 753.574 kb on + strand, within HGI48_RS03565at 753.649 kb on + strandat 753.742 kb on + strand, within HGI48_RS03565at 753.854 kb on + strandat 753.854 kb on + strandat 753.854 kb on + strandat 753.854 kb on + strandat 753.855 kb on - strandat 753.894 kb on + strandat 753.895 kb on - strandat 753.936 kb on + strandat 753.950 kb on + strandat 754.001 kb on + strandat 754.047 kb on + strandat 754.120 kb on - strandat 754.120 kb on - strandat 754.163 kb on + strandat 754.169 kb on + strand, within HGI48_RS03570at 754.294 kb on + strand, within HGI48_RS03570at 754.295 kb on + strand, within HGI48_RS03570at 754.295 kb on + strand, within HGI48_RS03570at 754.295 kb on + strand, within HGI48_RS03570at 754.295 kb on + strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.296 kb on - strand, within HGI48_RS03570at 754.368 kb on + strandat 754.491 kb on - strand, within HGI48_RS03570at 754.576 kb on - strand, within HGI48_RS03570at 754.609 kb on - strand, within HGI48_RS03570at 754.665 kb on + strand, within HGI48_RS03570at 754.665 kb on + strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.908 kb on + strandat 754.909 kb on - strand, within HGI48_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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751,422 - HGI48_RS03560 0.51 +0.3
751,422 - HGI48_RS03560 0.51 -0.5
751,422 - HGI48_RS03560 0.51 +0.9
751,422 - HGI48_RS03560 0.51 +0.4
751,490 - HGI48_RS03560 0.56 +0.6
751,703 + HGI48_RS03560 0.71 +1.0
751,704 - HGI48_RS03560 0.71 -1.1
751,704 - +1.9
751,808 + HGI48_RS03560 0.79 -0.5
751,808 + HGI48_RS03560 0.79 +0.7
751,809 - HGI48_RS03560 0.79 +0.6
751,847 + HGI48_RS03560 0.82 +0.4
751,847 + HGI48_RS03560 0.82 -1.5
751,847 + HGI48_RS03560 0.82 +0.4
751,847 + HGI48_RS03560 0.82 +0.7
751,848 - -0.7
751,848 - HGI48_RS03560 0.82 -0.6
751,848 - HGI48_RS03560 0.82 +0.5
751,848 - HGI48_RS03560 0.82 -0.9
751,848 - HGI48_RS03560 0.82 -0.5
751,848 - HGI48_RS03560 0.82 +0.1
751,848 - HGI48_RS03560 0.82 -1.3
751,848 - HGI48_RS03560 0.82 -0.3
751,848 - HGI48_RS03560 0.82 +0.3
751,848 - +0.3
751,848 - HGI48_RS03560 0.82 -1.1
751,848 - HGI48_RS03560 0.82 +0.3
751,848 - HGI48_RS03560 0.82 -0.7
751,951 + HGI48_RS03560 0.89 +0.4
751,951 + HGI48_RS03560 0.89 -0.7
751,952 - HGI48_RS03560 0.89 -0.6
752,043 + -1.0
752,043 + +0.0
752,044 - +0.3
752,044 - -0.5
752,048 - +0.9
752,072 + -1.1
752,203 - -0.6
752,204 + -1.6
752,204 + +0.4
752,205 - -1.7
752,205 - -1.8
752,205 - +0.5
752,476 + HGI48_RS03565 0.10 -0.4
752,476 + HGI48_RS03565 0.10 -0.3
752,476 + HGI48_RS03565 0.10 -0.3
752,548 + HGI48_RS03565 0.15 +0.3
752,548 + HGI48_RS03565 0.15 -1.3
752,548 + HGI48_RS03565 0.15 -1.0
752,548 + HGI48_RS03565 0.15 +1.1
752,548 + HGI48_RS03565 0.15 -0.5
752,548 + HGI48_RS03565 0.15 -0.4
752,549 - HGI48_RS03565 0.15 +0.9
752,549 - -0.7
752,549 - HGI48_RS03565 0.15 -1.0
752,549 - HGI48_RS03565 0.15 -1.7
752,591 - +1.6
752,748 + HGI48_RS03565 0.27 -0.1
752,749 - HGI48_RS03565 0.27 -2.9
752,749 - HGI48_RS03565 0.27 +0.1
752,863 - HGI48_RS03565 0.34 +0.7
752,912 + HGI48_RS03565 0.37 +0.1
752,912 + +0.9
752,912 + +0.9
752,913 - HGI48_RS03565 0.37 +0.6
752,973 + +0.3
752,973 + HGI48_RS03565 0.40 +0.9
752,974 - HGI48_RS03565 0.41 -1.3
752,974 - HGI48_RS03565 0.41 -1.1
752,976 + HGI48_RS03565 0.41 -0.3
752,976 + HGI48_RS03565 0.41 -0.5
752,977 - HGI48_RS03565 0.41 -1.5
753,002 + HGI48_RS03565 0.42 +0.4
753,002 + HGI48_RS03565 0.42 -0.1
753,003 - HGI48_RS03565 0.42 -0.3
753,003 - HGI48_RS03565 0.42 +0.0
753,064 + HGI48_RS03565 0.46 +0.3
753,065 - HGI48_RS03565 0.46 -0.5
753,275 + HGI48_RS03565 0.59 +0.6
753,275 + HGI48_RS03565 0.59 -1.7
753,275 + HGI48_RS03565 0.59 -1.3
753,275 + HGI48_RS03565 0.59 +0.9
753,275 + HGI48_RS03565 0.59 +0.5
753,276 - HGI48_RS03565 0.59 +0.9
753,276 - HGI48_RS03565 0.59 -0.8
753,276 - HGI48_RS03565 0.59 -0.4
753,326 + HGI48_RS03565 0.62 -2.8
753,327 - HGI48_RS03565 0.62 +0.1
753,336 - HGI48_RS03565 0.63 +0.3
753,339 + HGI48_RS03565 0.63 -0.5
753,339 + HGI48_RS03565 0.63 -0.1
753,339 + HGI48_RS03565 0.63 -0.7
753,340 - +0.3
753,340 - HGI48_RS03565 0.63 -0.1
753,372 - HGI48_RS03565 0.65 -1.5
753,441 + -0.1
753,441 + HGI48_RS03565 0.69 -1.7
753,441 + HGI48_RS03565 0.69 +0.1
753,441 + HGI48_RS03565 0.69 -0.9
753,442 - HGI48_RS03565 0.69 -1.5
753,445 + HGI48_RS03565 0.69 -2.4
753,446 - -0.1
753,446 - HGI48_RS03565 0.69 -1.1
753,446 - HGI48_RS03565 0.69 -0.5
753,446 - HGI48_RS03565 0.69 +0.2
753,502 + HGI48_RS03565 0.73 -0.9
753,574 + HGI48_RS03565 0.77 +0.9
753,574 + HGI48_RS03565 0.77 -0.7
753,574 + HGI48_RS03565 0.77 +1.7
753,649 + +1.9
753,742 + HGI48_RS03565 0.87 -1.7
753,854 + -1.5
753,854 + -0.5
753,854 + +0.9
753,854 + -0.1
753,855 - -0.2
753,894 + -0.9
753,895 - -1.1
753,936 + -1.1
753,950 + -2.6
754,001 + +0.3
754,047 + -0.4
754,120 - -0.1
754,120 - -0.1
754,163 + +0.3
754,169 + HGI48_RS03570 0.10 +0.4
754,294 + HGI48_RS03570 0.18 +0.3
754,295 + HGI48_RS03570 0.18 +0.3
754,295 + HGI48_RS03570 0.18 -0.4
754,295 + HGI48_RS03570 0.18 +0.4
754,295 + HGI48_RS03570 0.18 -1.7
754,296 - HGI48_RS03570 0.18 +0.3
754,296 - HGI48_RS03570 0.18 -1.7
754,296 - HGI48_RS03570 0.18 -0.4
754,296 - HGI48_RS03570 0.18 +0.3
754,296 - HGI48_RS03570 0.18 -0.9
754,296 - HGI48_RS03570 0.18 -0.1
754,368 + +1.4
754,491 - HGI48_RS03570 0.30 -0.4
754,576 - HGI48_RS03570 0.35 -0.4
754,609 - HGI48_RS03570 0.37 -0.6
754,665 + HGI48_RS03570 0.40 +0.1
754,665 + HGI48_RS03570 0.40 -0.1
754,666 - HGI48_RS03570 0.40 +0.5
754,666 - HGI48_RS03570 0.40 -1.1
754,666 - HGI48_RS03570 0.40 -1.3
754,666 - HGI48_RS03570 0.40 -0.1
754,666 - HGI48_RS03570 0.40 +1.2
754,666 - HGI48_RS03570 0.40 -0.7
754,666 - HGI48_RS03570 0.40 -0.1
754,666 - HGI48_RS03570 0.40 -0.6
754,666 - HGI48_RS03570 0.40 -1.3
754,666 - HGI48_RS03570 0.40 +0.5
754,666 - HGI48_RS03570 0.40 -0.1
754,727 + HGI48_RS03570 0.44 -0.6
754,727 + HGI48_RS03570 0.44 -0.4
754,728 - HGI48_RS03570 0.44 -0.4
754,728 - HGI48_RS03570 0.44 -0.0
754,728 - HGI48_RS03570 0.44 -1.7
754,733 + HGI48_RS03570 0.44 +0.3
754,733 + HGI48_RS03570 0.44 +1.0
754,734 - HGI48_RS03570 0.44 +0.6
754,734 - HGI48_RS03570 0.44 -0.4
754,734 - HGI48_RS03570 0.44 +0.9
754,734 - HGI48_RS03570 0.44 -2.1
754,908 + +1.6
754,909 - HGI48_RS03570 0.55 -0.1

Or see this region's nucleotide sequence