Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03465 and HGI48_RS03470 are separated by 85 nucleotides HGI48_RS03470 and HGI48_RS03475 are separated by 241 nucleotides HGI48_RS03475 and HGI48_RS03480 are separated by 29 nucleotides
HGI48_RS03465: HGI48_RS03465 - LysE family transporter, at 728,964 to 729,635
_RS03465
HGI48_RS03470: HGI48_RS03470 - tRNA-Gly, at 729,721 to 729,794
_RS03470
HGI48_RS03475: HGI48_RS03475 - winged helix-turn-helix transcriptional regulator, at 730,036 to 730,413
_RS03475
HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906
_RS03480
Position (kb) 730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.041 kb on + strand, within HGI48_RS03465 at 729.044 kb on + strand, within HGI48_RS03465 at 729.045 kb on - strand, within HGI48_RS03465 at 729.084 kb on - strand, within HGI48_RS03465 at 729.117 kb on + strand, within HGI48_RS03465 at 729.118 kb on - strand, within HGI48_RS03465 at 729.159 kb on + strand, within HGI48_RS03465 at 729.159 kb on + strand, within HGI48_RS03465 at 729.160 kb on - strand, within HGI48_RS03465 at 729.160 kb on - strand, within HGI48_RS03465 at 729.160 kb on - strand, within HGI48_RS03465 at 729.160 kb on - strand at 729.160 kb on - strand, within HGI48_RS03465 at 729.160 kb on - strand, within HGI48_RS03465 at 729.160 kb on - strand at 729.161 kb on + strand, within HGI48_RS03465 at 729.161 kb on + strand, within HGI48_RS03465 at 729.161 kb on + strand, within HGI48_RS03465 at 729.162 kb on - strand, within HGI48_RS03465 at 729.162 kb on - strand, within HGI48_RS03465 at 729.162 kb on - strand, within HGI48_RS03465 at 729.162 kb on - strand, within HGI48_RS03465 at 729.182 kb on - strand, within HGI48_RS03465 at 729.202 kb on + strand, within HGI48_RS03465 at 729.202 kb on + strand, within HGI48_RS03465 at 729.202 kb on + strand, within HGI48_RS03465 at 729.203 kb on - strand, within HGI48_RS03465 at 729.249 kb on + strand, within HGI48_RS03465 at 729.329 kb on + strand, within HGI48_RS03465 at 729.543 kb on + strand, within HGI48_RS03465 at 729.646 kb on + strand at 729.647 kb on - strand at 729.647 kb on - strand at 729.699 kb on + strand at 729.699 kb on + strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.701 kb on + strand at 729.702 kb on - strand at 729.739 kb on + strand, within HGI48_RS03470 at 729.740 kb on - strand at 729.740 kb on - strand at 729.762 kb on + strand, within HGI48_RS03470 at 729.762 kb on + strand, within HGI48_RS03470 at 729.763 kb on - strand, within HGI48_RS03470 at 729.763 kb on - strand, within HGI48_RS03470 at 729.764 kb on + strand, within HGI48_RS03470 at 729.765 kb on - strand, within HGI48_RS03470 at 729.810 kb on + strand at 729.811 kb on - strand at 729.819 kb on + strand at 729.820 kb on - strand at 729.820 kb on - strand at 729.820 kb on - strand at 729.842 kb on - strand at 729.919 kb on + strand at 729.919 kb on + strand at 729.919 kb on + strand at 729.920 kb on - strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.954 kb on + strand at 729.955 kb on - strand at 729.974 kb on + strand at 729.975 kb on - strand at 729.986 kb on + strand at 729.986 kb on + strand at 729.987 kb on - strand at 729.987 kb on - strand at 729.987 kb on - strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.996 kb on + strand at 729.997 kb on - strand at 729.997 kb on - strand at 729.997 kb on - strand at 730.004 kb on - strand at 730.054 kb on + strand at 730.101 kb on + strand, within HGI48_RS03475 at 730.101 kb on + strand, within HGI48_RS03475 at 730.102 kb on - strand, within HGI48_RS03475 at 730.152 kb on + strand, within HGI48_RS03475 at 730.153 kb on - strand, within HGI48_RS03475 at 730.276 kb on + strand at 730.276 kb on + strand, within HGI48_RS03475 at 730.276 kb on + strand, within HGI48_RS03475 at 730.316 kb on + strand, within HGI48_RS03475 at 730.316 kb on + strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.359 kb on + strand at 730.379 kb on - strand at 730.379 kb on - strand at 730.390 kb on - strand at 730.390 kb on - strand at 730.419 kb on + strand at 730.433 kb on + strand at 730.457 kb on + strand at 730.457 kb on + strand at 730.458 kb on - strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.477 kb on - strand at 730.477 kb on - strand at 730.479 kb on + strand at 730.480 kb on - strand at 730.480 kb on - strand at 730.553 kb on + strand at 730.553 kb on + strand at 730.554 kb on - strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.564 kb on - strand at 730.564 kb on - strand at 730.566 kb on - strand at 730.649 kb on + strand, within HGI48_RS03480 at 730.650 kb on - strand, within HGI48_RS03480 at 730.672 kb on - strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.685 kb on - strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.734 kb on - strand, within HGI48_RS03480 at 730.797 kb on + strand, within HGI48_RS03480 at 730.874 kb on + strand, within HGI48_RS03480 at 730.874 kb on + strand, within HGI48_RS03480 at 730.925 kb on + strand at 730.925 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 731.187 kb on + strand at 731.187 kb on + strand, within HGI48_RS03480 at 731.188 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.261 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.368 kb on + strand, within HGI48_RS03480 at 731.369 kb on - strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 729,041 + HGI48_RS03465 0.11 +1.1 729,044 + HGI48_RS03465 0.12 -0.6 729,045 - HGI48_RS03465 0.12 -0.4 729,084 - HGI48_RS03465 0.18 -1.5 729,117 + HGI48_RS03465 0.23 -1.5 729,118 - HGI48_RS03465 0.23 +0.5 729,159 + HGI48_RS03465 0.29 +0.1 729,159 + HGI48_RS03465 0.29 +0.3 729,160 - HGI48_RS03465 0.29 +0.3 729,160 - HGI48_RS03465 0.29 +0.0 729,160 - HGI48_RS03465 0.29 -0.1 729,160 - +0.3 729,160 - HGI48_RS03465 0.29 -0.1 729,160 - HGI48_RS03465 0.29 -1.5 729,160 - -0.7 729,161 + HGI48_RS03465 0.29 -0.1 729,161 + HGI48_RS03465 0.29 -1.5 729,161 + HGI48_RS03465 0.29 -2.6 729,162 - HGI48_RS03465 0.29 +0.0 729,162 - HGI48_RS03465 0.29 -2.1 729,162 - HGI48_RS03465 0.29 +1.7 729,162 - HGI48_RS03465 0.29 -1.1 729,182 - HGI48_RS03465 0.32 -0.5 729,202 + HGI48_RS03465 0.35 -0.9 729,202 + HGI48_RS03465 0.35 +0.0 729,202 + HGI48_RS03465 0.35 -1.5 729,203 - HGI48_RS03465 0.36 -0.3 729,249 + HGI48_RS03465 0.42 -0.9 729,329 + HGI48_RS03465 0.54 -2.5 729,543 + HGI48_RS03465 0.86 -0.6 729,646 + +0.3 729,647 - +0.2 729,647 - -1.1 729,699 + -0.4 729,699 + +1.1 729,700 - -2.3 729,700 - -0.7 729,700 - +0.4 729,700 - +1.3 729,700 - -1.7 729,701 + -0.2 729,702 - -0.5 729,739 + HGI48_RS03470 0.24 -0.5 729,740 - +1.9 729,740 - +0.3 729,762 + HGI48_RS03470 0.55 -1.9 729,762 + HGI48_RS03470 0.55 -0.4 729,763 - HGI48_RS03470 0.57 +0.9 729,763 - HGI48_RS03470 0.57 +0.1 729,764 + HGI48_RS03470 0.58 +0.1 729,765 - HGI48_RS03470 0.59 -0.6 729,810 + +0.4 729,811 - +1.7 729,819 + +1.2 729,820 - +1.4 729,820 - -1.5 729,820 - +0.6 729,842 - -1.0 729,919 + +0.4 729,919 + -0.7 729,919 + +0.3 729,920 - +0.7 729,928 + -0.7 729,928 + +0.3 729,928 + -0.3 729,928 + -0.1 729,928 + -0.3 729,929 - -1.7 729,929 - -1.5 729,929 - -0.1 729,929 - -1.1 729,929 - -0.5 729,929 - +1.9 729,954 + -0.4 729,955 - +0.9 729,974 + -0.9 729,975 - -0.1 729,986 + -0.5 729,986 + +0.0 729,987 - +0.4 729,987 - +0.3 729,987 - +0.0 729,994 + +0.9 729,994 + +0.9 729,994 + +0.5 729,994 + -0.6 729,994 + -0.7 729,994 + -1.1 729,995 - +0.3 729,995 - +0.7 729,995 - -0.5 729,995 - +0.1 729,995 - +0.3 729,995 - -1.1 729,996 + -0.9 729,997 - +0.0 729,997 - -0.7 729,997 - -1.7 730,004 - +0.9 730,054 + -0.1 730,101 + HGI48_RS03475 0.17 -0.3 730,101 + HGI48_RS03475 0.17 -2.1 730,102 - HGI48_RS03475 0.17 +0.1 730,152 + HGI48_RS03475 0.31 -2.3 730,153 - HGI48_RS03475 0.31 -0.9 730,276 + +0.9 730,276 + HGI48_RS03475 0.63 -0.1 730,276 + HGI48_RS03475 0.63 +0.9 730,316 + HGI48_RS03475 0.74 -1.1 730,316 + HGI48_RS03475 0.74 -1.6 730,317 - HGI48_RS03475 0.74 +0.9 730,317 - HGI48_RS03475 0.74 -0.1 730,317 - HGI48_RS03475 0.74 -0.6 730,359 + +2.4 730,379 - -1.7 730,379 - +0.5 730,390 - -0.0 730,390 - -0.4 730,419 + +0.9 730,433 + -1.5 730,457 + +0.4 730,457 + -0.9 730,458 - -0.1 730,476 + -1.0 730,476 + +1.3 730,476 + -2.1 730,476 + -1.7 730,476 + -0.1 730,477 - +0.4 730,477 - +0.6 730,479 + -1.3 730,480 - +0.0 730,480 - -2.1 730,553 + -0.5 730,553 + +0.1 730,554 - +0.3 730,563 + -0.7 730,563 + -0.3 730,563 + +0.9 730,563 + -1.7 730,563 + +1.2 730,563 + -2.1 730,563 + +0.3 730,564 - -1.1 730,564 - +0.7 730,566 - -1.5 730,649 + HGI48_RS03480 0.14 -0.5 730,650 - HGI48_RS03480 0.14 -2.1 730,672 - HGI48_RS03480 0.16 +0.0 730,684 + HGI48_RS03480 0.16 -0.9 730,684 + HGI48_RS03480 0.16 +0.3 730,684 + HGI48_RS03480 0.16 +1.1 730,685 - HGI48_RS03480 0.17 +1.4 730,733 + HGI48_RS03480 0.20 +0.1 730,733 + HGI48_RS03480 0.20 -1.5 730,733 + HGI48_RS03480 0.20 -0.2 730,733 + HGI48_RS03480 0.20 -0.6 730,734 - HGI48_RS03480 0.20 +0.2 730,797 + HGI48_RS03480 0.24 -1.1 730,874 + HGI48_RS03480 0.29 +0.9 730,874 + HGI48_RS03480 0.29 -1.5 730,925 + +0.3 730,925 + HGI48_RS03480 0.33 -1.9 730,981 + HGI48_RS03480 0.37 -1.7 730,981 + HGI48_RS03480 0.37 +0.5 730,999 + HGI48_RS03480 0.38 -1.8 730,999 + HGI48_RS03480 0.38 -0.1 730,999 + HGI48_RS03480 0.38 +1.1 730,999 + HGI48_RS03480 0.38 -1.5 730,999 + HGI48_RS03480 0.38 -0.5 731,187 + +0.9 731,187 + HGI48_RS03480 0.51 +0.1 731,188 - HGI48_RS03480 0.51 -2.3 731,190 - HGI48_RS03480 0.51 +0.5 731,190 - HGI48_RS03480 0.51 +0.9 731,261 + HGI48_RS03480 0.56 +1.0 731,312 + HGI48_RS03480 0.59 -0.0 731,312 + HGI48_RS03480 0.59 +0.3 731,368 + HGI48_RS03480 0.63 +0.0 731,369 - HGI48_RS03480 0.63 -0.5 731,410 + HGI48_RS03480 0.66 -1.1 731,410 + HGI48_RS03480 0.66 -0.4 731,410 + HGI48_RS03480 0.66 +0.1 731,410 + HGI48_RS03480 0.66 -0.4 731,410 + HGI48_RS03480 0.66 -2.1 731,410 + HGI48_RS03480 0.66 -1.5 731,411 - HGI48_RS03480 0.66 -1.7 731,411 - HGI48_RS03480 0.66 +0.2 731,411 - HGI48_RS03480 0.66 -1.5 731,411 - HGI48_RS03480 0.66 -0.3 731,411 - HGI48_RS03480 0.66 -1.5 731,411 - HGI48_RS03480 0.66 +0.4 731,411 - HGI48_RS03480 0.66 -0.0
Or see this region's nucleotide sequence