Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03440 and HGI48_RS03445 are separated by 89 nucleotides HGI48_RS03445 and HGI48_RS03450 are separated by 57 nucleotides HGI48_RS03450 and HGI48_RS03455 are separated by 166 nucleotides
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
HGI48_RS03445: HGI48_RS03445 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 723,520 to 724,236
_RS03445
HGI48_RS03450: HGI48_RS03450 - single-stranded-DNA-specific exonuclease RecJ, at 724,294 to 726,024
_RS03450
HGI48_RS03455: HGI48_RS03455 - peptide chain release factor 2, at 726,191 to 727,289
_RS03455
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.368 kb on + strand at 723.506 kb on - strand at 723.513 kb on + strand at 723.514 kb on - strand at 723.533 kb on + strand at 723.533 kb on + strand at 723.534 kb on - strand at 723.536 kb on + strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand at 723.695 kb on - strand, within HGI48_RS03445 at 723.777 kb on + strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.824 kb on - strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.853 kb on - strand, within HGI48_RS03445 at 723.905 kb on + strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.914 kb on - strand, within HGI48_RS03445 at 723.915 kb on + strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.941 kb on - strand, within HGI48_RS03445 at 723.950 kb on - strand, within HGI48_RS03445 at 724.071 kb on + strand, within HGI48_RS03445 at 724.260 kb on - strand at 724.276 kb on + strand at 724.276 kb on + strand at 724.277 kb on - strand at 724.277 kb on - strand at 724.379 kb on - strand at 724.394 kb on + strand at 724.395 kb on - strand at 724.822 kb on - strand, within HGI48_RS03450 at 725.164 kb on - strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.188 kb on - strand, within HGI48_RS03450 at 725.188 kb on - strand, within HGI48_RS03450 at 725.188 kb on - strand at 725.295 kb on + strand, within HGI48_RS03450 at 725.371 kb on + strand, within HGI48_RS03450 at 725.951 kb on - strand at 726.036 kb on + strand at 726.037 kb on - strand at 726.043 kb on + strand at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.176 kb on + strand at 726.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 723,368 + -0.7 723,506 - +0.3 723,513 + -0.7 723,514 - -1.8 723,533 + +1.4 723,533 + -0.7 723,534 - +0.9 723,536 + +0.1 723,537 - -0.3 723,537 - +2.1 723,537 - -0.6 723,537 - -0.7 723,694 + HGI48_RS03445 0.24 +0.1 723,694 + HGI48_RS03445 0.24 +0.3 723,694 + HGI48_RS03445 0.24 -0.9 723,695 - HGI48_RS03445 0.24 -0.0 723,695 - HGI48_RS03445 0.24 -0.1 723,695 - HGI48_RS03445 0.24 +0.4 723,695 - HGI48_RS03445 0.24 -0.7 723,695 - +2.7 723,695 - HGI48_RS03445 0.24 -0.1 723,777 + HGI48_RS03445 0.36 -1.5 723,778 - HGI48_RS03445 0.36 -0.1 723,778 - HGI48_RS03445 0.36 -1.4 723,824 - HGI48_RS03445 0.42 -0.3 723,852 + HGI48_RS03445 0.46 +0.4 723,852 + HGI48_RS03445 0.46 -1.5 723,852 + HGI48_RS03445 0.46 -0.3 723,853 - HGI48_RS03445 0.46 +0.4 723,905 + HGI48_RS03445 0.54 -0.9 723,906 - HGI48_RS03445 0.54 +0.1 723,906 - HGI48_RS03445 0.54 -0.7 723,914 - HGI48_RS03445 0.55 -0.5 723,915 + HGI48_RS03445 0.55 +1.0 723,916 - HGI48_RS03445 0.55 -0.7 723,916 - HGI48_RS03445 0.55 -1.7 723,941 - HGI48_RS03445 0.59 +0.4 723,950 - HGI48_RS03445 0.60 -1.7 724,071 + HGI48_RS03445 0.77 -0.7 724,260 - +0.1 724,276 + +0.1 724,276 + +0.4 724,277 - -0.1 724,277 - -1.5 724,379 - +0.9 724,394 + +0.4 724,395 - -0.9 724,822 - HGI48_RS03450 0.31 -0.8 725,164 - HGI48_RS03450 0.50 -0.7 725,187 + HGI48_RS03450 0.52 -0.8 725,187 + HGI48_RS03450 0.52 -1.1 725,187 + HGI48_RS03450 0.52 -1.5 725,188 - HGI48_RS03450 0.52 -1.6 725,188 - HGI48_RS03450 0.52 -0.3 725,188 - +0.3 725,295 + HGI48_RS03450 0.58 -0.1 725,371 + HGI48_RS03450 0.62 -0.7 725,951 - +0.9 726,036 + +0.9 726,037 - -0.7 726,043 + -0.7 726,043 + -0.1 726,043 + +0.6 726,044 - -1.7 726,176 + -1.3 726,176 + -0.7
Or see this region's nucleotide sequence