Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03425 and HGI48_RS03430 are separated by 94 nucleotides HGI48_RS03430 and HGI48_RS03435 are separated by 128 nucleotides HGI48_RS03435 and HGI48_RS03440 are separated by 272 nucleotides
HGI48_RS03425: HGI48_RS03425 - protein YgfX, at 719,760 to 720,191
_RS03425
HGI48_RS03430: HGI48_RS03430 - flavodoxin FldB, at 720,286 to 720,804
_RS03430
HGI48_RS03435: HGI48_RS03435 - MHS family MFS transporter, at 720,933 to 722,258
_RS03435
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
Position (kb) 720
721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 720.107 kb on + strand at 720.108 kb on - strand, within HGI48_RS03425 at 720.190 kb on - strand at 720.196 kb on - strand at 720.292 kb on + strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.392 kb on + strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.435 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand at 720.668 kb on + strand, within HGI48_RS03430 at 720.768 kb on - strand at 720.768 kb on - strand at 720.796 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.830 kb on + strand at 720.831 kb on - strand at 720.867 kb on - strand at 720.934 kb on + strand at 721.009 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.061 kb on - strand at 721.098 kb on - strand at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand at 721.100 kb on - strand, within HGI48_RS03435 at 721.119 kb on - strand, within HGI48_RS03435 at 721.121 kb on - strand, within HGI48_RS03435 at 721.201 kb on - strand, within HGI48_RS03435 at 721.214 kb on + strand, within HGI48_RS03435 at 721.215 kb on - strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand at 721.447 kb on + strand, within HGI48_RS03435 at 721.462 kb on + strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.474 kb on + strand at 721.474 kb on + strand at 721.474 kb on + strand, within HGI48_RS03435 at 721.474 kb on + strand, within HGI48_RS03435 at 721.475 kb on - strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand at 721.772 kb on - strand, within HGI48_RS03435 at 721.891 kb on - strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.929 kb on + strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 722.007 kb on + strand, within HGI48_RS03435 at 722.129 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.140 kb on + strand at 722.205 kb on + strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.277 kb on - strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.389 kb on - strand at 722.389 kb on - strand at 722.453 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.489 kb on - strand at 722.623 kb on + strand, within HGI48_RS03440 at 723.221 kb on + strand, within HGI48_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 720,107 + +1.3 720,108 - HGI48_RS03425 0.81 -0.2 720,190 - -0.9 720,196 - +0.6 720,292 + -1.1 720,293 - +0.3 720,293 - +0.4 720,293 - +1.2 720,392 + HGI48_RS03430 0.20 +0.5 720,393 - HGI48_RS03430 0.21 -1.7 720,393 - HGI48_RS03430 0.21 -0.4 720,393 - HGI48_RS03430 0.21 -1.3 720,396 + HGI48_RS03430 0.21 -1.1 720,396 + HGI48_RS03430 0.21 -0.1 720,396 + HGI48_RS03430 0.21 -0.5 720,435 - HGI48_RS03430 0.29 -0.1 720,552 - HGI48_RS03430 0.51 -0.4 720,552 - -0.7 720,668 + HGI48_RS03430 0.74 +1.2 720,768 - -0.5 720,768 - -0.3 720,796 + -0.4 720,804 + -1.7 720,804 + -0.1 720,804 + -0.7 720,805 - -1.1 720,805 - +0.1 720,805 - +0.1 720,830 + +0.1 720,831 - -1.7 720,867 - +0.3 720,934 + -0.1 721,009 + +1.2 721,021 + +0.5 721,021 + +0.5 721,021 + -1.1 721,022 - -0.7 721,022 - -1.7 721,022 - -0.7 721,022 - +0.9 721,022 - -0.7 721,022 - -1.5 721,022 - -0.9 721,022 - -1.8 721,022 - -0.4 721,061 - -3.1 721,098 - +0.9 721,099 + HGI48_RS03435 0.13 -1.7 721,099 + HGI48_RS03435 0.13 -0.1 721,099 + HGI48_RS03435 0.13 -0.1 721,099 + HGI48_RS03435 0.13 -1.2 721,099 + HGI48_RS03435 0.13 -1.3 721,100 - HGI48_RS03435 0.13 -0.6 721,100 - HGI48_RS03435 0.13 -2.2 721,100 - -0.1 721,100 - HGI48_RS03435 0.13 +0.9 721,119 - HGI48_RS03435 0.14 -1.9 721,121 - HGI48_RS03435 0.14 +0.1 721,201 - HGI48_RS03435 0.20 -1.1 721,214 + HGI48_RS03435 0.21 -0.0 721,215 - HGI48_RS03435 0.21 -0.1 721,435 + HGI48_RS03435 0.38 -0.5 721,435 + HGI48_RS03435 0.38 -0.9 721,435 + HGI48_RS03435 0.38 -0.3 721,436 - HGI48_RS03435 0.38 -0.6 721,436 - HGI48_RS03435 0.38 -2.1 721,447 + HGI48_RS03435 0.39 -1.1 721,447 + HGI48_RS03435 0.39 +0.9 721,447 + +0.9 721,447 + HGI48_RS03435 0.39 -0.7 721,462 + HGI48_RS03435 0.40 -0.2 721,463 - HGI48_RS03435 0.40 -1.8 721,463 - HGI48_RS03435 0.40 -0.9 721,474 + -0.1 721,474 + +0.9 721,474 + HGI48_RS03435 0.41 -0.4 721,474 + HGI48_RS03435 0.41 -0.2 721,475 - HGI48_RS03435 0.41 -0.2 721,615 + HGI48_RS03435 0.51 -1.7 721,615 + HGI48_RS03435 0.51 +0.4 721,616 - HGI48_RS03435 0.52 +0.1 721,616 - HGI48_RS03435 0.52 +0.7 721,616 - HGI48_RS03435 0.52 +0.0 721,616 - HGI48_RS03435 0.52 +0.4 721,616 - HGI48_RS03435 0.52 -0.1 721,616 - +1.6 721,772 - HGI48_RS03435 0.63 -1.1 721,891 - HGI48_RS03435 0.72 -0.7 721,906 + HGI48_RS03435 0.73 -2.7 721,906 + HGI48_RS03435 0.73 +0.9 721,906 + HGI48_RS03435 0.73 -1.7 721,907 - HGI48_RS03435 0.73 -0.1 721,907 - HGI48_RS03435 0.73 -1.1 721,929 + HGI48_RS03435 0.75 -0.3 721,930 - HGI48_RS03435 0.75 +0.9 721,930 - HGI48_RS03435 0.75 +1.3 722,007 + HGI48_RS03435 0.81 -0.6 722,129 + -0.0 722,134 + +0.1 722,134 + +0.3 722,134 + +0.1 722,134 + +0.5 722,134 + +0.1 722,134 + -0.6 722,134 + -1.1 722,134 + -2.1 722,135 - +0.5 722,135 - +0.8 722,135 - -0.5 722,135 - -0.1 722,135 - -1.1 722,135 - -0.4 722,135 - -1.5 722,140 + +0.2 722,205 + -1.1 722,234 + +0.9 722,234 + -0.1 722,277 - -0.6 722,296 + -0.1 722,296 + +0.4 722,296 + -0.7 722,296 + +0.1 722,296 + -0.1 722,296 + -0.4 722,296 + +1.3 722,296 + +0.9 722,296 + +1.2 722,296 + -0.7 722,297 - +0.5 722,297 - -0.1 722,297 - -1.5 722,297 - +1.2 722,297 - +0.3 722,297 - -1.5 722,297 - +0.6 722,388 + +0.1 722,388 + +0.3 722,388 + +1.2 722,388 + -0.8 722,388 + +0.7 722,389 - -0.1 722,389 - -0.7 722,453 + -0.1 722,464 + +0.3 722,464 + -1.5 722,464 + -1.5 722,489 - -0.1 722,623 + HGI48_RS03440 0.10 -1.1 723,221 + HGI48_RS03440 0.77 -2.8
Or see this region's nucleotide sequence