Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03400 and HGI48_RS03405 are separated by 79 nucleotides HGI48_RS03405 and HGI48_RS03410 are separated by 273 nucleotides HGI48_RS03410 and HGI48_RS03415 are separated by 73 nucleotides
HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533
_RS03400
HGI48_RS03405: HGI48_RS03405 - HD domain-containing protein, at 716,613 to 717,221
_RS03405
HGI48_RS03410: HGI48_RS03410 - hemolysin III family protein, at 717,495 to 718,145
_RS03410
HGI48_RS03415: HGI48_RS03415 - tRNA-modifying protein YgfZ, at 718,219 to 719,199
_RS03415
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 716.532 kb on - strand at 716.545 kb on - strand at 716.594 kb on + strand at 716.595 kb on - strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.836 kb on + strand, within HGI48_RS03405 at 716.837 kb on - strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.958 kb on + strand, within HGI48_RS03405 at 716.959 kb on - strand, within HGI48_RS03405 at 716.959 kb on - strand at 717.040 kb on + strand, within HGI48_RS03405 at 717.240 kb on - strand at 717.240 kb on - strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.256 kb on - strand at 717.270 kb on - strand at 717.288 kb on + strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.330 kb on + strand at 717.330 kb on + strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.444 kb on + strand at 717.445 kb on - strand at 717.467 kb on + strand at 717.467 kb on + strand at 717.468 kb on - strand at 717.468 kb on - strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.525 kb on - strand at 717.525 kb on - strand at 717.525 kb on - strand at 717.551 kb on + strand at 717.551 kb on + strand at 717.551 kb on + strand at 717.551 kb on + strand at 717.552 kb on - strand at 717.598 kb on + strand, within HGI48_RS03410 at 717.598 kb on + strand, within HGI48_RS03410 at 717.599 kb on - strand at 717.599 kb on - strand, within HGI48_RS03410 at 717.599 kb on - strand, within HGI48_RS03410 at 717.599 kb on - strand, within HGI48_RS03410 at 717.599 kb on - strand, within HGI48_RS03410 at 717.601 kb on + strand, within HGI48_RS03410 at 717.651 kb on + strand, within HGI48_RS03410 at 717.652 kb on - strand, within HGI48_RS03410 at 717.652 kb on - strand, within HGI48_RS03410 at 717.679 kb on + strand, within HGI48_RS03410 at 717.680 kb on - strand, within HGI48_RS03410 at 717.702 kb on + strand, within HGI48_RS03410 at 717.703 kb on - strand, within HGI48_RS03410 at 717.761 kb on + strand, within HGI48_RS03410 at 717.761 kb on + strand, within HGI48_RS03410 at 717.762 kb on - strand, within HGI48_RS03410 at 717.765 kb on + strand, within HGI48_RS03410 at 717.765 kb on + strand, within HGI48_RS03410 at 717.765 kb on + strand at 717.765 kb on + strand, within HGI48_RS03410 at 717.766 kb on - strand at 717.766 kb on - strand, within HGI48_RS03410 at 717.772 kb on + strand, within HGI48_RS03410 at 717.772 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.786 kb on + strand, within HGI48_RS03410 at 717.787 kb on - strand, within HGI48_RS03410 at 717.787 kb on - strand, within HGI48_RS03410 at 717.787 kb on - strand, within HGI48_RS03410 at 717.788 kb on + strand, within HGI48_RS03410 at 717.788 kb on + strand, within HGI48_RS03410 at 717.812 kb on + strand, within HGI48_RS03410 at 717.813 kb on - strand at 717.845 kb on + strand, within HGI48_RS03410 at 717.845 kb on + strand, within HGI48_RS03410 at 717.845 kb on + strand, within HGI48_RS03410 at 717.846 kb on - strand at 717.924 kb on + strand, within HGI48_RS03410 at 717.924 kb on + strand, within HGI48_RS03410 at 717.961 kb on - strand, within HGI48_RS03410 at 717.961 kb on - strand at 718.023 kb on + strand, within HGI48_RS03410 at 718.023 kb on + strand, within HGI48_RS03410 at 718.024 kb on - strand, within HGI48_RS03410 at 718.026 kb on - strand, within HGI48_RS03410 at 718.045 kb on - strand, within HGI48_RS03410 at 718.128 kb on + strand at 718.128 kb on + strand at 718.128 kb on + strand at 718.128 kb on + strand at 718.128 kb on + strand at 718.128 kb on + strand at 718.129 kb on - strand at 718.129 kb on - strand at 718.129 kb on - strand at 718.134 kb on + strand at 718.134 kb on + strand at 718.134 kb on + strand at 718.134 kb on + strand at 718.134 kb on + strand at 718.135 kb on - strand at 718.135 kb on - strand at 718.135 kb on - strand at 718.135 kb on - strand at 718.138 kb on + strand at 718.138 kb on + strand at 718.138 kb on + strand at 718.139 kb on - strand at 718.139 kb on - strand at 718.139 kb on - strand at 718.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 716,532 - -0.4 716,545 - -0.0 716,594 + +0.2 716,595 - +1.6 716,614 + -1.7 716,614 + +0.5 716,614 + -0.1 716,614 + +0.5 716,615 - -0.3 716,615 - +2.9 716,615 - -1.7 716,615 - -1.3 716,615 - +0.7 716,615 - -0.6 716,836 + HGI48_RS03405 0.37 +0.1 716,837 - HGI48_RS03405 0.37 -0.3 716,950 + HGI48_RS03405 0.55 +0.1 716,950 + HGI48_RS03405 0.55 -0.5 716,950 + HGI48_RS03405 0.55 +0.7 716,951 - HGI48_RS03405 0.56 +0.7 716,951 - HGI48_RS03405 0.56 -0.6 716,951 - HGI48_RS03405 0.56 -0.4 716,958 + HGI48_RS03405 0.57 -1.5 716,959 - HGI48_RS03405 0.57 -0.5 716,959 - -0.7 717,040 + HGI48_RS03405 0.70 -0.5 717,240 - -1.5 717,240 - +0.0 717,250 + +1.7 717,250 + -0.9 717,250 + -0.2 717,250 + +0.6 717,251 - +0.3 717,251 - -0.6 717,251 - -1.0 717,251 - -0.8 717,256 - -1.0 717,270 - +0.9 717,288 + +0.9 717,289 - -0.5 717,289 - +0.9 717,289 - -1.3 717,289 - -2.1 717,330 + -0.4 717,330 + -0.7 717,434 - +1.1 717,434 - +0.5 717,434 - +0.0 717,434 - -0.4 717,434 - -0.1 717,434 - +1.6 717,444 + -1.1 717,445 - -0.7 717,467 + +0.4 717,467 + -0.8 717,468 - +0.2 717,468 - -0.1 717,524 + -0.7 717,524 + -1.1 717,524 + +0.5 717,525 - +0.6 717,525 - +0.2 717,525 - -0.4 717,551 + +0.9 717,551 + +1.4 717,551 + +0.2 717,551 + -1.1 717,552 - +0.9 717,598 + HGI48_RS03410 0.16 +1.4 717,598 + HGI48_RS03410 0.16 -2.1 717,599 - +0.3 717,599 - HGI48_RS03410 0.16 -0.9 717,599 - HGI48_RS03410 0.16 +0.3 717,599 - HGI48_RS03410 0.16 -0.9 717,599 - HGI48_RS03410 0.16 -0.9 717,601 + HGI48_RS03410 0.16 -0.5 717,651 + HGI48_RS03410 0.24 -0.1 717,652 - HGI48_RS03410 0.24 -0.4 717,652 - HGI48_RS03410 0.24 -1.1 717,679 + HGI48_RS03410 0.28 -2.1 717,680 - HGI48_RS03410 0.28 -0.5 717,702 + HGI48_RS03410 0.32 +0.5 717,703 - HGI48_RS03410 0.32 -1.1 717,761 + HGI48_RS03410 0.41 +0.5 717,761 + HGI48_RS03410 0.41 +0.1 717,762 - HGI48_RS03410 0.41 -0.4 717,765 + HGI48_RS03410 0.41 -0.5 717,765 + HGI48_RS03410 0.41 +0.9 717,765 + +1.3 717,765 + HGI48_RS03410 0.41 -0.6 717,766 - +0.3 717,766 - HGI48_RS03410 0.42 -1.8 717,772 + HGI48_RS03410 0.43 -0.4 717,772 + HGI48_RS03410 0.43 -1.1 717,786 + HGI48_RS03410 0.45 +0.6 717,786 + HGI48_RS03410 0.45 +1.4 717,786 + HGI48_RS03410 0.45 +0.5 717,786 + HGI48_RS03410 0.45 +1.2 717,786 + HGI48_RS03410 0.45 +0.4 717,786 + HGI48_RS03410 0.45 -0.1 717,786 + HGI48_RS03410 0.45 -0.7 717,786 + HGI48_RS03410 0.45 -1.1 717,786 + HGI48_RS03410 0.45 -0.4 717,787 - HGI48_RS03410 0.45 +0.9 717,787 - HGI48_RS03410 0.45 -0.9 717,787 - HGI48_RS03410 0.45 -1.2 717,788 + HGI48_RS03410 0.45 -0.1 717,788 + HGI48_RS03410 0.45 -1.1 717,812 + HGI48_RS03410 0.49 -1.1 717,813 - +1.9 717,845 + HGI48_RS03410 0.54 +0.1 717,845 + HGI48_RS03410 0.54 -0.5 717,845 + HGI48_RS03410 0.54 +0.1 717,846 - +2.1 717,924 + HGI48_RS03410 0.66 -0.1 717,924 + HGI48_RS03410 0.66 -0.6 717,961 - HGI48_RS03410 0.72 +0.1 717,961 - -0.7 718,023 + HGI48_RS03410 0.81 -0.7 718,023 + HGI48_RS03410 0.81 +0.9 718,024 - HGI48_RS03410 0.81 -0.9 718,026 - HGI48_RS03410 0.82 +0.7 718,045 - HGI48_RS03410 0.84 -1.0 718,128 + -1.7 718,128 + -1.1 718,128 + +1.6 718,128 + +0.0 718,128 + -0.5 718,128 + +0.4 718,129 - +0.1 718,129 - +0.2 718,129 - -1.6 718,134 + +1.2 718,134 + -0.7 718,134 + -0.1 718,134 + -1.3 718,134 + -0.7 718,135 - -0.7 718,135 - +0.2 718,135 - -0.7 718,135 - -0.5 718,138 + -0.3 718,138 + -0.5 718,138 + -1.7 718,139 - -1.5 718,139 - +0.6 718,139 - -1.0 718,236 - -2.5
Or see this region's nucleotide sequence