Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03385 and HGI48_RS03390 are separated by 814 nucleotides HGI48_RS03390 and HGI48_RS03395 are separated by 30 nucleotides HGI48_RS03395 and HGI48_RS03400 are separated by 131 nucleotides
HGI48_RS03385: HGI48_RS03385 - acetolactate synthase AlsS, at 709,496 to 711,175
_RS03385
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
HGI48_RS03395: HGI48_RS03395 - glycine cleavage system protein GcvH, at 713,121 to 713,528
_RS03395
HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533
_RS03400
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 711.005 kb on + strand, within HGI48_RS03385 at 711.123 kb on - strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.182 kb on + strand at 711.182 kb on + strand at 711.183 kb on - strand at 711.183 kb on - strand at 711.200 kb on + strand at 711.200 kb on + strand at 711.207 kb on + strand at 711.258 kb on + strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.268 kb on + strand at 711.268 kb on + strand at 711.293 kb on + strand at 711.424 kb on + strand at 711.454 kb on - strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.475 kb on - strand at 711.475 kb on - strand at 711.486 kb on + strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.864 kb on - strand at 711.914 kb on + strand at 711.977 kb on + strand at 711.978 kb on - strand at 711.978 kb on - strand at 711.978 kb on - strand at 712.011 kb on + strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.078 kb on - strand at 712.191 kb on + strand, within HGI48_RS03390 at 712.242 kb on + strand, within HGI48_RS03390 at 712.243 kb on - strand at 712.243 kb on - strand, within HGI48_RS03390 at 712.243 kb on - strand, within HGI48_RS03390 at 712.276 kb on + strand, within HGI48_RS03390 at 712.277 kb on - strand, within HGI48_RS03390 at 712.277 kb on - strand at 712.294 kb on - strand, within HGI48_RS03390 at 712.312 kb on - strand, within HGI48_RS03390 at 712.312 kb on - strand, within HGI48_RS03390 at 712.386 kb on - strand, within HGI48_RS03390 at 712.386 kb on - strand, within HGI48_RS03390 at 712.386 kb on - strand, within HGI48_RS03390 at 712.386 kb on - strand, within HGI48_RS03390 at 712.554 kb on + strand, within HGI48_RS03390 at 712.555 kb on - strand, within HGI48_RS03390 at 712.555 kb on - strand, within HGI48_RS03390 at 712.555 kb on - strand, within HGI48_RS03390 at 712.555 kb on - strand, within HGI48_RS03390 at 712.556 kb on + strand, within HGI48_RS03390 at 712.556 kb on + strand, within HGI48_RS03390 at 712.557 kb on - strand, within HGI48_RS03390 at 712.696 kb on - strand, within HGI48_RS03390 at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.151 kb on - strand at 713.151 kb on - strand at 713.193 kb on + strand, within HGI48_RS03395 at 713.247 kb on - strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.526 kb on + strand at 713.527 kb on - strand at 713.527 kb on - strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.567 kb on - strand at 713.638 kb on + strand at 713.639 kb on - strand at 713.639 kb on - strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.910 kb on - strand at 713.910 kb on - strand at 713.984 kb on + strand, within HGI48_RS03400 at 713.984 kb on + strand at 713.985 kb on - strand, within HGI48_RS03400 at 713.985 kb on - strand, within HGI48_RS03400 at 713.987 kb on - strand, within HGI48_RS03400 at 713.993 kb on + strand at 713.995 kb on + strand, within HGI48_RS03400 at 713.996 kb on - strand, within HGI48_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 711,005 + HGI48_RS03385 0.90 +0.5 711,123 - +0.9 711,179 + +0.3 711,179 + +1.9 711,179 + -1.1 711,180 - -0.3 711,180 - +0.9 711,180 - +0.1 711,182 + -1.1 711,182 + -2.5 711,183 - -0.6 711,183 - +0.2 711,200 + +0.1 711,200 + -3.4 711,207 + +0.1 711,258 + -0.4 711,259 - -0.7 711,259 - -0.5 711,259 - -0.2 711,268 + -0.4 711,268 + +1.1 711,293 + +1.3 711,424 + +0.2 711,454 - +1.4 711,474 + -0.9 711,474 + -1.5 711,474 + +1.0 711,475 - -1.2 711,475 - +1.1 711,486 + +0.1 711,487 - -0.3 711,487 - -1.7 711,487 - -1.2 711,539 + +0.7 711,539 + -1.1 711,539 + +0.2 711,539 + -1.5 711,540 - -1.1 711,540 - -0.7 711,540 - -0.9 711,864 - -1.1 711,914 + +0.3 711,977 + -0.4 711,978 - +0.3 711,978 - +1.2 711,978 - +0.9 712,011 + -1.1 712,012 - -0.1 712,012 - +0.9 712,012 - +0.1 712,012 - +0.1 712,078 - +0.3 712,191 + HGI48_RS03390 0.18 -1.8 712,242 + HGI48_RS03390 0.23 -0.7 712,243 - +1.9 712,243 - HGI48_RS03390 0.23 +0.5 712,243 - HGI48_RS03390 0.23 +0.6 712,276 + HGI48_RS03390 0.26 -1.8 712,277 - HGI48_RS03390 0.26 +0.1 712,277 - -0.7 712,294 - HGI48_RS03390 0.28 -0.3 712,312 - HGI48_RS03390 0.29 +1.1 712,312 - HGI48_RS03390 0.29 -0.9 712,386 - HGI48_RS03390 0.36 -1.7 712,386 - HGI48_RS03390 0.36 -0.3 712,386 - HGI48_RS03390 0.36 -0.5 712,386 - HGI48_RS03390 0.36 -1.1 712,554 + HGI48_RS03390 0.51 -1.2 712,555 - HGI48_RS03390 0.51 -0.7 712,555 - HGI48_RS03390 0.51 -0.6 712,555 - HGI48_RS03390 0.51 +0.4 712,555 - HGI48_RS03390 0.51 -0.4 712,556 + HGI48_RS03390 0.51 -0.8 712,556 + HGI48_RS03390 0.51 +0.1 712,557 - HGI48_RS03390 0.51 -0.7 712,696 - HGI48_RS03390 0.64 -1.3 713,148 + +0.1 713,148 + -0.1 713,148 + -0.1 713,148 + -2.7 713,148 + +0.6 713,148 + +0.3 713,149 - +0.4 713,149 - -0.4 713,149 - +0.9 713,149 - -0.5 713,150 + -0.5 713,150 + +0.1 713,150 + +0.9 713,150 + +2.4 713,150 + -0.7 713,151 - +1.4 713,151 - +1.4 713,193 + HGI48_RS03395 0.18 -0.5 713,247 - HGI48_RS03395 0.31 -1.1 713,331 + HGI48_RS03395 0.51 +0.1 713,331 + HGI48_RS03395 0.51 +0.3 713,331 + HGI48_RS03395 0.51 +0.9 713,331 + HGI48_RS03395 0.51 +0.6 713,332 - HGI48_RS03395 0.52 -0.7 713,332 - HGI48_RS03395 0.52 -1.1 713,332 - HGI48_RS03395 0.52 +0.9 713,332 - HGI48_RS03395 0.52 -1.3 713,526 + +0.3 713,527 - +0.9 713,527 - +1.4 713,566 + -1.9 713,566 + +0.3 713,566 + +0.9 713,566 + +0.5 713,566 + +0.4 713,567 - +0.3 713,638 + +0.1 713,639 - -1.6 713,639 - +1.9 713,909 + -0.3 713,909 + +0.3 713,909 + +1.1 713,910 - -0.6 713,910 - -0.3 713,984 + HGI48_RS03400 0.11 +0.9 713,984 + -0.7 713,985 - HGI48_RS03400 0.11 -1.1 713,985 - HGI48_RS03400 0.11 -1.9 713,987 - HGI48_RS03400 0.11 +0.1 713,993 + +1.3 713,995 + HGI48_RS03400 0.12 -0.3 713,996 - HGI48_RS03400 0.12 -0.4
Or see this region's nucleotide sequence