Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03375 and HGI48_RS03380 are separated by 111 nucleotides HGI48_RS03380 and HGI48_RS03385 are separated by 61 nucleotides HGI48_RS03385 and HGI48_RS03390 are separated by 814 nucleotides
HGI48_RS03375: HGI48_RS03375 - LysR family transcriptional regulator, at 707,641 to 708,534
_RS03375
HGI48_RS03380: HGI48_RS03380 - acetolactate decarboxylase, at 708,646 to 709,434
_RS03380
HGI48_RS03385: HGI48_RS03385 - acetolactate synthase AlsS, at 709,496 to 711,175
_RS03385
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 708.513 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.536 kb on + strand at 708.536 kb on + strand at 708.597 kb on - strand at 708.664 kb on - strand at 708.738 kb on + strand at 708.739 kb on - strand, within HGI48_RS03380 at 708.739 kb on - strand, within HGI48_RS03380 at 708.743 kb on - strand, within HGI48_RS03380 at 708.768 kb on + strand, within HGI48_RS03380 at 708.781 kb on + strand, within HGI48_RS03380 at 708.789 kb on + strand, within HGI48_RS03380 at 708.790 kb on - strand, within HGI48_RS03380 at 708.790 kb on - strand, within HGI48_RS03380 at 708.795 kb on + strand at 708.795 kb on + strand, within HGI48_RS03380 at 708.795 kb on + strand, within HGI48_RS03380 at 708.795 kb on + strand, within HGI48_RS03380 at 708.796 kb on - strand, within HGI48_RS03380 at 708.843 kb on + strand, within HGI48_RS03380 at 709.027 kb on - strand, within HGI48_RS03380 at 709.071 kb on - strand, within HGI48_RS03380 at 709.084 kb on - strand at 709.106 kb on + strand, within HGI48_RS03380 at 709.107 kb on - strand, within HGI48_RS03380 at 709.107 kb on - strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.127 kb on - strand, within HGI48_RS03380 at 709.128 kb on + strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.230 kb on + strand, within HGI48_RS03380 at 709.231 kb on - strand, within HGI48_RS03380 at 709.231 kb on - strand, within HGI48_RS03380 at 709.287 kb on + strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand at 709.288 kb on - strand, within HGI48_RS03380 at 709.317 kb on - strand, within HGI48_RS03380 at 709.478 kb on - strand at 709.488 kb on + strand at 709.488 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.495 kb on + strand at 709.504 kb on + strand at 709.504 kb on + strand at 709.504 kb on + strand at 709.505 kb on - strand at 709.505 kb on - strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.682 kb on - strand, within HGI48_RS03385 at 709.895 kb on + strand, within HGI48_RS03385 at 709.895 kb on + strand, within HGI48_RS03385 at 709.896 kb on - strand, within HGI48_RS03385 at 709.896 kb on - strand, within HGI48_RS03385 at 709.896 kb on - strand at 709.935 kb on + strand, within HGI48_RS03385 at 709.935 kb on + strand, within HGI48_RS03385 at 709.936 kb on - strand, within HGI48_RS03385 at 709.987 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.012 kb on - strand, within HGI48_RS03385 at 710.215 kb on + strand, within HGI48_RS03385 at 710.216 kb on - strand, within HGI48_RS03385 at 710.219 kb on + strand, within HGI48_RS03385 at 710.219 kb on + strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.275 kb on - strand at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.310 kb on + strand, within HGI48_RS03385 at 710.358 kb on - strand, within HGI48_RS03385 at 710.358 kb on - strand, within HGI48_RS03385 at 710.409 kb on + strand, within HGI48_RS03385 at 710.409 kb on + strand at 710.409 kb on + strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.483 kb on - strand, within HGI48_RS03385 at 710.483 kb on - strand at 710.483 kb on - strand, within HGI48_RS03385 at 710.483 kb on - strand, within HGI48_RS03385 at 710.588 kb on - strand, within HGI48_RS03385 at 710.590 kb on + strand, within HGI48_RS03385 at 710.650 kb on + strand, within HGI48_RS03385 at 710.674 kb on + strand, within HGI48_RS03385 at 710.706 kb on - strand, within HGI48_RS03385 at 710.711 kb on + strand, within HGI48_RS03385 at 710.711 kb on + strand, within HGI48_RS03385 at 710.759 kb on - strand, within HGI48_RS03385 at 710.759 kb on - strand, within HGI48_RS03385 at 710.924 kb on + strand, within HGI48_RS03385 at 710.924 kb on + strand, within HGI48_RS03385 at 710.924 kb on + strand at 710.924 kb on + strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 711.005 kb on + strand, within HGI48_RS03385 at 711.123 kb on - strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.182 kb on + strand at 711.182 kb on + strand at 711.183 kb on - strand at 711.183 kb on - strand at 711.200 kb on + strand at 711.200 kb on + strand at 711.207 kb on + strand at 711.258 kb on + strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.268 kb on + strand at 711.268 kb on + strand at 711.293 kb on + strand at 711.424 kb on + strand at 711.454 kb on - strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.475 kb on - strand at 711.475 kb on - strand at 711.486 kb on + strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.864 kb on - strand at 711.914 kb on + strand at 711.977 kb on + strand at 711.978 kb on - strand at 711.978 kb on - strand at 711.978 kb on - strand at 712.011 kb on + strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 708,513 - -1.1 708,527 - -1.0 708,527 - +1.1 708,527 - +0.9 708,527 - +0.5 708,527 - +1.3 708,536 + +0.1 708,536 + -0.8 708,597 - +0.2 708,664 - -1.3 708,738 + +0.3 708,739 - HGI48_RS03380 0.12 -0.9 708,739 - HGI48_RS03380 0.12 -1.1 708,743 - HGI48_RS03380 0.12 -1.9 708,768 + HGI48_RS03380 0.15 -0.5 708,781 + HGI48_RS03380 0.17 -0.7 708,789 + HGI48_RS03380 0.18 -0.0 708,790 - HGI48_RS03380 0.18 +1.0 708,790 - HGI48_RS03380 0.18 -0.2 708,795 + +1.3 708,795 + HGI48_RS03380 0.19 +0.1 708,795 + HGI48_RS03380 0.19 -1.3 708,795 + HGI48_RS03380 0.19 -0.2 708,796 - HGI48_RS03380 0.19 +1.1 708,843 + HGI48_RS03380 0.25 +1.7 709,027 - HGI48_RS03380 0.48 +0.7 709,071 - HGI48_RS03380 0.54 -0.5 709,084 - +0.9 709,106 + HGI48_RS03380 0.58 +0.2 709,107 - HGI48_RS03380 0.58 -0.1 709,107 - HGI48_RS03380 0.58 -1.3 709,126 + HGI48_RS03380 0.61 -1.1 709,126 + HGI48_RS03380 0.61 -1.7 709,126 + HGI48_RS03380 0.61 -0.5 709,127 - HGI48_RS03380 0.61 -0.3 709,128 + HGI48_RS03380 0.61 -1.5 709,129 - HGI48_RS03380 0.61 +0.5 709,129 - HGI48_RS03380 0.61 -1.5 709,129 - HGI48_RS03380 0.61 +0.0 709,129 - HGI48_RS03380 0.61 -0.3 709,217 - HGI48_RS03380 0.72 +1.4 709,217 - HGI48_RS03380 0.72 +2.3 709,217 - HGI48_RS03380 0.72 -2.3 709,217 - HGI48_RS03380 0.72 +0.1 709,217 - HGI48_RS03380 0.72 -0.3 709,230 + HGI48_RS03380 0.74 -2.1 709,231 - HGI48_RS03380 0.74 +1.1 709,231 - HGI48_RS03380 0.74 -1.5 709,287 + HGI48_RS03380 0.81 -0.9 709,288 - HGI48_RS03380 0.81 -0.0 709,288 - HGI48_RS03380 0.81 -0.5 709,288 - HGI48_RS03380 0.81 +0.9 709,288 - HGI48_RS03380 0.81 +0.9 709,288 - HGI48_RS03380 0.81 -0.5 709,288 - HGI48_RS03380 0.81 -1.5 709,288 - +0.9 709,288 - HGI48_RS03380 0.81 -1.5 709,317 - HGI48_RS03380 0.85 -0.1 709,478 - +0.9 709,488 + -3.0 709,488 + -0.1 709,492 + -0.1 709,492 + +1.6 709,492 + +0.1 709,492 + -0.2 709,492 + -0.2 709,493 - -0.1 709,493 - +0.5 709,493 - -1.7 709,493 - +0.6 709,493 - -1.7 709,493 - -2.3 709,493 - +0.6 709,493 - +1.7 709,495 + -1.1 709,504 + -0.5 709,504 + -0.0 709,504 + -1.9 709,505 - -1.1 709,505 - -0.3 709,577 + -0.5 709,577 + +0.4 709,577 + +3.0 709,577 + +1.5 709,577 + -1.8 709,577 + +0.3 709,577 + -0.4 709,577 + -0.4 709,577 + -0.9 709,577 + -1.5 709,577 + +0.2 709,577 + -0.8 709,577 + +0.5 709,578 - -1.1 709,578 - -0.1 709,578 - +0.1 709,578 - -1.3 709,578 - -0.8 709,578 - +0.9 709,578 - -0.6 709,578 - +0.5 709,578 - +0.5 709,578 - -2.3 709,682 - HGI48_RS03385 0.11 -0.1 709,895 + HGI48_RS03385 0.24 -1.3 709,895 + HGI48_RS03385 0.24 +0.0 709,896 - HGI48_RS03385 0.24 +1.5 709,896 - HGI48_RS03385 0.24 -1.1 709,896 - -0.7 709,935 + HGI48_RS03385 0.26 -0.4 709,935 + HGI48_RS03385 0.26 +0.3 709,936 - HGI48_RS03385 0.26 +1.1 709,987 + HGI48_RS03385 0.29 +0.6 710,005 + HGI48_RS03385 0.30 -0.1 710,005 + HGI48_RS03385 0.30 +0.7 710,005 + +2.7 710,006 - HGI48_RS03385 0.30 -0.5 710,006 - HGI48_RS03385 0.30 -1.9 710,006 - HGI48_RS03385 0.30 +1.5 710,006 - HGI48_RS03385 0.30 -0.9 710,006 - HGI48_RS03385 0.30 -0.7 710,012 - HGI48_RS03385 0.31 +1.7 710,215 + HGI48_RS03385 0.43 -0.6 710,216 - HGI48_RS03385 0.43 -0.0 710,219 + HGI48_RS03385 0.43 -0.4 710,219 + HGI48_RS03385 0.43 +0.5 710,220 - HGI48_RS03385 0.43 -1.1 710,220 - HGI48_RS03385 0.43 +0.5 710,220 - HGI48_RS03385 0.43 -0.9 710,275 - +1.3 710,285 - HGI48_RS03385 0.47 -0.5 710,285 - HGI48_RS03385 0.47 -1.1 710,285 - HGI48_RS03385 0.47 -1.6 710,285 - HGI48_RS03385 0.47 +1.0 710,310 + HGI48_RS03385 0.48 -0.7 710,358 - HGI48_RS03385 0.51 +0.1 710,358 - HGI48_RS03385 0.51 -2.1 710,409 + HGI48_RS03385 0.54 -0.1 710,409 + -0.1 710,409 + HGI48_RS03385 0.54 -1.7 710,410 - HGI48_RS03385 0.54 +0.9 710,410 - HGI48_RS03385 0.54 -0.8 710,410 - HGI48_RS03385 0.54 +0.6 710,410 - +0.3 710,410 - HGI48_RS03385 0.54 -0.3 710,410 - HGI48_RS03385 0.54 +0.5 710,410 - HGI48_RS03385 0.54 +0.6 710,482 + HGI48_RS03385 0.59 -1.5 710,482 + HGI48_RS03385 0.59 -1.9 710,482 + HGI48_RS03385 0.59 -0.5 710,483 - HGI48_RS03385 0.59 +0.7 710,483 - +0.9 710,483 - HGI48_RS03385 0.59 +1.2 710,483 - HGI48_RS03385 0.59 -0.5 710,588 - HGI48_RS03385 0.65 -1.9 710,590 + HGI48_RS03385 0.65 +0.4 710,650 + HGI48_RS03385 0.69 -0.4 710,674 + HGI48_RS03385 0.70 -1.5 710,706 - HGI48_RS03385 0.72 +0.6 710,711 + HGI48_RS03385 0.72 +0.4 710,711 + HGI48_RS03385 0.72 -1.1 710,759 - HGI48_RS03385 0.75 -0.5 710,759 - HGI48_RS03385 0.75 +0.1 710,924 + HGI48_RS03385 0.85 +0.5 710,924 + HGI48_RS03385 0.85 +0.9 710,924 + -0.1 710,924 + HGI48_RS03385 0.85 -0.4 710,925 - HGI48_RS03385 0.85 -0.1 710,925 - HGI48_RS03385 0.85 +0.3 710,925 - HGI48_RS03385 0.85 -0.2 710,957 + HGI48_RS03385 0.87 -1.5 710,957 + HGI48_RS03385 0.87 -1.5 710,957 + HGI48_RS03385 0.87 -0.2 710,957 + HGI48_RS03385 0.87 -0.7 710,958 - HGI48_RS03385 0.87 -0.1 710,958 - HGI48_RS03385 0.87 -0.1 710,958 - HGI48_RS03385 0.87 -1.9 710,958 - HGI48_RS03385 0.87 +1.1 711,005 + HGI48_RS03385 0.90 +0.5 711,123 - +0.9 711,179 + +0.3 711,179 + +1.9 711,179 + -1.1 711,180 - -0.3 711,180 - +0.9 711,180 - +0.1 711,182 + -1.1 711,182 + -2.5 711,183 - -0.6 711,183 - +0.2 711,200 + +0.1 711,200 + -3.4 711,207 + +0.1 711,258 + -0.4 711,259 - -0.7 711,259 - -0.5 711,259 - -0.2 711,268 + -0.4 711,268 + +1.1 711,293 + +1.3 711,424 + +0.2 711,454 - +1.4 711,474 + -0.9 711,474 + -1.5 711,474 + +1.0 711,475 - -1.2 711,475 - +1.1 711,486 + +0.1 711,487 - -0.3 711,487 - -1.7 711,487 - -1.2 711,539 + +0.7 711,539 + -1.1 711,539 + +0.2 711,539 + -1.5 711,540 - -1.1 711,540 - -0.7 711,540 - -0.9 711,864 - -1.1 711,914 + +0.3 711,977 + -0.4 711,978 - +0.3 711,978 - +1.2 711,978 - +0.9 712,011 + -1.1 712,012 - -0.1 712,012 - +0.9 712,012 - +0.1 712,012 - +0.1 712,078 - +0.3
Or see this region's nucleotide sequence