Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03345

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS03340 and HGI48_RS03345 are separated by 44 nucleotidesHGI48_RS03345 and HGI48_RS03350 are separated by 114 nucleotides HGI48_RS03340: HGI48_RS03340 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 703,551 to 704,579 _RS03340 HGI48_RS03345: HGI48_RS03345 - aldo/keto reductase, at 704,624 to 705,619 _RS03345 HGI48_RS03350: HGI48_RS03350 - LysR family transcriptional regulator, at 705,734 to 706,636 _RS03350 Position (kb) 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2at 703.643 kb on + strandat 703.643 kb on + strandat 703.644 kb on - strandat 703.644 kb on - strandat 703.644 kb on - strandat 703.681 kb on + strandat 703.681 kb on + strand, within HGI48_RS03340at 703.681 kb on + strand, within HGI48_RS03340at 703.682 kb on - strand, within HGI48_RS03340at 703.682 kb on - strand, within HGI48_RS03340at 703.696 kb on - strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.795 kb on - strand, within HGI48_RS03340at 703.795 kb on - strandat 703.798 kb on - strand, within HGI48_RS03340at 703.798 kb on - strandat 703.798 kb on - strand, within HGI48_RS03340at 703.946 kb on + strandat 703.977 kb on + strand, within HGI48_RS03340at 703.977 kb on + strand, within HGI48_RS03340at 704.004 kb on - strand, within HGI48_RS03340at 704.035 kb on - strand, within HGI48_RS03340at 704.144 kb on + strandat 704.144 kb on + strand, within HGI48_RS03340at 704.450 kb on + strand, within HGI48_RS03340at 704.450 kb on + strand, within HGI48_RS03340at 704.564 kb on + strandat 704.565 kb on - strandat 704.568 kb on - strandat 704.918 kb on - strand, within HGI48_RS03345at 705.007 kb on + strand, within HGI48_RS03345at 705.007 kb on + strand, within HGI48_RS03345at 705.008 kb on - strand, within HGI48_RS03345at 705.156 kb on - strand, within HGI48_RS03345at 705.164 kb on - strand, within HGI48_RS03345at 705.164 kb on - strand, within HGI48_RS03345at 705.250 kb on - strand, within HGI48_RS03345at 705.250 kb on - strand, within HGI48_RS03345at 705.252 kb on + strand, within HGI48_RS03345at 705.253 kb on - strand, within HGI48_RS03345at 705.253 kb on - strand, within HGI48_RS03345at 705.253 kb on - strand, within HGI48_RS03345at 705.253 kb on - strand, within HGI48_RS03345at 705.263 kb on - strandat 705.263 kb on - strand, within HGI48_RS03345at 705.312 kb on + strandat 705.312 kb on + strand, within HGI48_RS03345at 705.313 kb on - strand, within HGI48_RS03345at 705.440 kb on - strand, within HGI48_RS03345at 705.450 kb on + strand, within HGI48_RS03345at 705.450 kb on + strand, within HGI48_RS03345at 705.450 kb on + strand, within HGI48_RS03345at 705.450 kb on + strand, within HGI48_RS03345at 705.450 kb on + strandat 705.454 kb on + strand, within HGI48_RS03345at 705.455 kb on - strand, within HGI48_RS03345at 705.540 kb on + strandat 705.541 kb on - strandat 705.541 kb on - strandat 705.649 kb on + strandat 705.649 kb on + strandat 705.649 kb on + strandat 705.649 kb on + strandat 705.649 kb on + strandat 705.710 kb on - strandat 705.714 kb on + strandat 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.926 kb on + strand, within HGI48_RS03350at 705.927 kb on - strand, within HGI48_RS03350at 705.927 kb on - strand, within HGI48_RS03350at 705.927 kb on - strand, within HGI48_RS03350at 705.927 kb on - strand, within HGI48_RS03350at 705.929 kb on + strand, within HGI48_RS03350at 706.226 kb on - strand, within HGI48_RS03350at 706.226 kb on - strand, within HGI48_RS03350at 706.307 kb on + strand, within HGI48_RS03350at 706.308 kb on - strand, within HGI48_RS03350at 706.321 kb on + strand, within HGI48_RS03350at 706.321 kb on + strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.322 kb on - strand, within HGI48_RS03350at 706.366 kb on + strand, within HGI48_RS03350at 706.367 kb on - strand, within HGI48_RS03350at 706.415 kb on + strandat 706.415 kb on + strandat 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strandat 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strand, within HGI48_RS03350at 706.415 kb on + strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.416 kb on - strand, within HGI48_RS03350at 706.541 kb on + strand, within HGI48_RS03350at 706.541 kb on + strand, within HGI48_RS03350at 706.541 kb on + strand, within HGI48_RS03350at 706.542 kb on - strand, within HGI48_RS03350at 706.542 kb on - strand, within HGI48_RS03350at 706.542 kb on - strand, within HGI48_RS03350at 706.550 kb on + strandat 706.550 kb on + strandat 706.550 kb on + strandat 706.550 kb on + strandat 706.550 kb on + strandat 706.550 kb on + strandat 706.550 kb on + strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.551 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
703,643 + -1.7
703,643 + -1.7
703,644 - -0.4
703,644 - -1.1
703,644 - -0.1
703,681 + -0.1
703,681 + HGI48_RS03340 0.13 +0.3
703,681 + HGI48_RS03340 0.13 -0.2
703,682 - HGI48_RS03340 0.13 +0.5
703,682 - HGI48_RS03340 0.13 +0.4
703,696 - HGI48_RS03340 0.14 +1.0
703,794 + HGI48_RS03340 0.24 -1.1
703,794 + HGI48_RS03340 0.24 -0.8
703,794 + HGI48_RS03340 0.24 -0.1
703,794 + HGI48_RS03340 0.24 -2.2
703,794 + HGI48_RS03340 0.24 +0.0
703,794 + HGI48_RS03340 0.24 -0.3
703,794 + HGI48_RS03340 0.24 -0.1
703,795 - HGI48_RS03340 0.24 +0.1
703,795 - +0.9
703,798 - HGI48_RS03340 0.24 +0.6
703,798 - +0.3
703,798 - HGI48_RS03340 0.24 -1.5
703,946 + +0.3
703,977 + HGI48_RS03340 0.41 +0.1
703,977 + HGI48_RS03340 0.41 -0.5
704,004 - HGI48_RS03340 0.44 +0.9
704,035 - HGI48_RS03340 0.47 +0.9
704,144 + +0.3
704,144 + HGI48_RS03340 0.58 -0.5
704,450 + HGI48_RS03340 0.87 +0.5
704,450 + HGI48_RS03340 0.87 -0.5
704,564 + -2.2
704,565 - +0.1
704,568 - -0.1
704,918 - HGI48_RS03345 0.30 +0.1
705,007 + HGI48_RS03345 0.38 +0.1
705,007 + HGI48_RS03345 0.38 -0.1
705,008 - HGI48_RS03345 0.39 -0.1
705,156 - HGI48_RS03345 0.53 -0.8
705,164 - HGI48_RS03345 0.54 -1.9
705,164 - HGI48_RS03345 0.54 -0.5
705,250 - HGI48_RS03345 0.63 -0.1
705,250 - HGI48_RS03345 0.63 -0.1
705,252 + HGI48_RS03345 0.63 -0.4
705,253 - HGI48_RS03345 0.63 +0.9
705,253 - HGI48_RS03345 0.63 -0.1
705,253 - HGI48_RS03345 0.63 +0.3
705,253 - HGI48_RS03345 0.63 -0.5
705,263 - +1.5
705,263 - HGI48_RS03345 0.64 -1.9
705,312 + +0.9
705,312 + HGI48_RS03345 0.69 +1.1
705,313 - HGI48_RS03345 0.69 +0.6
705,440 - HGI48_RS03345 0.82 +0.4
705,450 + HGI48_RS03345 0.83 +0.1
705,450 + HGI48_RS03345 0.83 +0.9
705,450 + HGI48_RS03345 0.83 -0.5
705,450 + HGI48_RS03345 0.83 +0.1
705,450 + +0.9
705,454 + HGI48_RS03345 0.83 +1.5
705,455 - HGI48_RS03345 0.83 +0.3
705,540 + -0.3
705,541 - +0.9
705,541 - +0.3
705,649 + -2.5
705,649 + +0.0
705,649 + +0.3
705,649 + +0.3
705,649 + +0.6
705,710 - -1.0
705,714 + +1.1
705,926 + HGI48_RS03350 0.21 +0.3
705,926 + HGI48_RS03350 0.21 +0.7
705,926 + HGI48_RS03350 0.21 -0.0
705,926 + HGI48_RS03350 0.21 -0.5
705,926 + HGI48_RS03350 0.21 +0.9
705,926 + HGI48_RS03350 0.21 -2.3
705,926 + HGI48_RS03350 0.21 +0.9
705,927 - HGI48_RS03350 0.21 -1.7
705,927 - HGI48_RS03350 0.21 -0.5
705,927 - HGI48_RS03350 0.21 +0.5
705,927 - HGI48_RS03350 0.21 +0.9
705,929 + HGI48_RS03350 0.22 -0.1
706,226 - HGI48_RS03350 0.54 -0.1
706,226 - HGI48_RS03350 0.54 -0.1
706,307 + HGI48_RS03350 0.63 +0.3
706,308 - HGI48_RS03350 0.64 +0.0
706,321 + HGI48_RS03350 0.65 -0.5
706,321 + HGI48_RS03350 0.65 -0.5
706,322 - HGI48_RS03350 0.65 -1.4
706,322 - HGI48_RS03350 0.65 -0.9
706,322 - HGI48_RS03350 0.65 +0.0
706,322 - HGI48_RS03350 0.65 -0.6
706,322 - HGI48_RS03350 0.65 -1.4
706,322 - HGI48_RS03350 0.65 -0.7
706,322 - HGI48_RS03350 0.65 -1.7
706,322 - HGI48_RS03350 0.65 -1.6
706,366 + HGI48_RS03350 0.70 +0.9
706,367 - HGI48_RS03350 0.70 -0.1
706,415 + +1.9
706,415 + +0.9
706,415 + HGI48_RS03350 0.75 +0.2
706,415 + +0.9
706,415 + HGI48_RS03350 0.75 +0.9
706,415 + HGI48_RS03350 0.75 -0.1
706,415 + HGI48_RS03350 0.75 +0.6
706,415 + HGI48_RS03350 0.75 -1.4
706,415 + HGI48_RS03350 0.75 -1.5
706,415 + HGI48_RS03350 0.75 -1.7
706,416 - HGI48_RS03350 0.76 +1.0
706,416 - HGI48_RS03350 0.76 -1.1
706,416 - HGI48_RS03350 0.76 -0.5
706,416 - HGI48_RS03350 0.76 -1.3
706,416 - HGI48_RS03350 0.76 -0.3
706,416 - HGI48_RS03350 0.76 -0.7
706,416 - HGI48_RS03350 0.76 -0.7
706,541 + HGI48_RS03350 0.89 -0.5
706,541 + HGI48_RS03350 0.89 -1.5
706,541 + HGI48_RS03350 0.89 -0.6
706,542 - HGI48_RS03350 0.89 +0.9
706,542 - HGI48_RS03350 0.89 -0.1
706,542 - HGI48_RS03350 0.89 -0.3
706,550 + -0.8
706,550 + -1.7
706,550 + +0.3
706,550 + -0.7
706,550 + -0.7
706,550 + -0.5
706,550 + +0.2
706,551 - -0.5
706,551 - +1.5
706,551 - +0.5
706,551 - +0.1
706,551 - -1.1
706,551 - +1.2
706,551 - -1.0

Or see this region's nucleotide sequence