Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03330 and HGI48_RS03335 overlap by 32 nucleotides HGI48_RS03335 and HGI48_RS03340 are separated by 188 nucleotides HGI48_RS03340 and HGI48_RS03345 are separated by 44 nucleotides
HGI48_RS03330: HGI48_RS03330 - ribosomal protein S18-alanine N-acetyltransferase, at 702,531 to 702,974
_RS03330
HGI48_RS03335: HGI48_RS03335 - DNA polymerase III subunit psi, at 702,943 to 703,362
_RS03335
HGI48_RS03340: HGI48_RS03340 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 703,551 to 704,579
_RS03340
HGI48_RS03345: HGI48_RS03345 - aldo/keto reductase, at 704,624 to 705,619
_RS03345
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1 at 702.587 kb on - strand, within HGI48_RS03330 at 702.589 kb on + strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.632 kb on - strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.782 kb on + strand at 702.782 kb on + strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.795 kb on + strand, within HGI48_RS03330 at 702.796 kb on - strand, within HGI48_RS03330 at 702.798 kb on + strand, within HGI48_RS03330 at 702.798 kb on + strand at 702.798 kb on + strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.815 kb on - strand, within HGI48_RS03330 at 702.913 kb on - strand, within HGI48_RS03330 at 703.368 kb on - strand at 703.401 kb on + strand at 703.420 kb on + strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.436 kb on + strand at 703.436 kb on + strand at 703.437 kb on - strand at 703.482 kb on - strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.515 kb on - strand at 703.515 kb on - strand at 703.515 kb on - strand at 703.516 kb on + strand at 703.516 kb on + strand at 703.516 kb on + strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.582 kb on + strand at 703.583 kb on - strand at 703.643 kb on + strand at 703.643 kb on + strand at 703.644 kb on - strand at 703.644 kb on - strand at 703.644 kb on - strand at 703.681 kb on + strand at 703.681 kb on + strand, within HGI48_RS03340 at 703.681 kb on + strand, within HGI48_RS03340 at 703.682 kb on - strand, within HGI48_RS03340 at 703.682 kb on - strand, within HGI48_RS03340 at 703.696 kb on - strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.795 kb on - strand, within HGI48_RS03340 at 703.795 kb on - strand at 703.798 kb on - strand, within HGI48_RS03340 at 703.798 kb on - strand at 703.798 kb on - strand, within HGI48_RS03340 at 703.946 kb on + strand at 703.977 kb on + strand, within HGI48_RS03340 at 703.977 kb on + strand, within HGI48_RS03340 at 704.004 kb on - strand, within HGI48_RS03340 at 704.035 kb on - strand, within HGI48_RS03340 at 704.144 kb on + strand at 704.144 kb on + strand, within HGI48_RS03340 at 704.450 kb on + strand, within HGI48_RS03340 at 704.450 kb on + strand, within HGI48_RS03340 at 704.564 kb on + strand at 704.565 kb on - strand at 704.568 kb on - strand at 704.918 kb on - strand, within HGI48_RS03345 at 705.007 kb on + strand, within HGI48_RS03345 at 705.007 kb on + strand, within HGI48_RS03345 at 705.008 kb on - strand, within HGI48_RS03345 at 705.156 kb on - strand, within HGI48_RS03345 at 705.164 kb on - strand, within HGI48_RS03345 at 705.164 kb on - strand, within HGI48_RS03345 at 705.250 kb on - strand, within HGI48_RS03345 at 705.250 kb on - strand, within HGI48_RS03345 at 705.252 kb on + strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.263 kb on - strand at 705.263 kb on - strand, within HGI48_RS03345 at 705.312 kb on + strand at 705.312 kb on + strand, within HGI48_RS03345 at 705.313 kb on - strand, within HGI48_RS03345 at 705.440 kb on - strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand at 705.454 kb on + strand, within HGI48_RS03345 at 705.455 kb on - strand, within HGI48_RS03345 at 705.540 kb on + strand at 705.541 kb on - strand at 705.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 702,587 - HGI48_RS03330 0.13 -0.6 702,589 + HGI48_RS03330 0.13 -1.5 702,590 - HGI48_RS03330 0.13 +1.2 702,590 - HGI48_RS03330 0.13 -0.5 702,632 - HGI48_RS03330 0.23 -1.7 702,675 + HGI48_RS03330 0.32 -0.0 702,675 + HGI48_RS03330 0.32 +0.9 702,676 - HGI48_RS03330 0.33 -0.5 702,676 - HGI48_RS03330 0.33 -0.1 702,676 - HGI48_RS03330 0.33 +1.5 702,782 + -0.1 702,782 + HGI48_RS03330 0.57 -1.7 702,783 - HGI48_RS03330 0.57 -1.9 702,783 - HGI48_RS03330 0.57 +0.0 702,795 + HGI48_RS03330 0.59 -1.0 702,796 - HGI48_RS03330 0.60 -0.4 702,798 + HGI48_RS03330 0.60 +0.7 702,798 + -0.7 702,798 + HGI48_RS03330 0.60 -0.7 702,799 - HGI48_RS03330 0.60 +0.2 702,799 - HGI48_RS03330 0.60 -1.7 702,799 - HGI48_RS03330 0.60 +1.1 702,814 + HGI48_RS03330 0.64 +1.0 702,814 + HGI48_RS03330 0.64 +0.4 702,815 - HGI48_RS03330 0.64 -0.3 702,913 - HGI48_RS03330 0.86 +0.0 703,368 - -1.9 703,401 + -0.1 703,420 + -2.2 703,421 - +0.9 703,421 - -0.1 703,421 - -0.2 703,436 + -0.3 703,436 + +0.5 703,437 - -0.5 703,482 - -0.4 703,514 + +1.4 703,514 + -0.1 703,514 + +0.5 703,514 + -1.1 703,515 - +0.7 703,515 - +0.3 703,515 - +0.9 703,516 + -0.2 703,516 + -0.5 703,516 + +0.3 703,517 - +0.3 703,517 - +0.7 703,517 - -0.4 703,517 - +0.9 703,582 + -1.2 703,583 - +0.4 703,643 + -1.7 703,643 + -1.7 703,644 - -0.4 703,644 - -1.1 703,644 - -0.1 703,681 + -0.1 703,681 + HGI48_RS03340 0.13 +0.3 703,681 + HGI48_RS03340 0.13 -0.2 703,682 - HGI48_RS03340 0.13 +0.5 703,682 - HGI48_RS03340 0.13 +0.4 703,696 - HGI48_RS03340 0.14 +1.0 703,794 + HGI48_RS03340 0.24 -1.1 703,794 + HGI48_RS03340 0.24 -0.8 703,794 + HGI48_RS03340 0.24 -0.1 703,794 + HGI48_RS03340 0.24 -2.2 703,794 + HGI48_RS03340 0.24 +0.0 703,794 + HGI48_RS03340 0.24 -0.3 703,794 + HGI48_RS03340 0.24 -0.1 703,795 - HGI48_RS03340 0.24 +0.1 703,795 - +0.9 703,798 - HGI48_RS03340 0.24 +0.6 703,798 - +0.3 703,798 - HGI48_RS03340 0.24 -1.5 703,946 + +0.3 703,977 + HGI48_RS03340 0.41 +0.1 703,977 + HGI48_RS03340 0.41 -0.5 704,004 - HGI48_RS03340 0.44 +0.9 704,035 - HGI48_RS03340 0.47 +0.9 704,144 + +0.3 704,144 + HGI48_RS03340 0.58 -0.5 704,450 + HGI48_RS03340 0.87 +0.5 704,450 + HGI48_RS03340 0.87 -0.5 704,564 + -2.2 704,565 - +0.1 704,568 - -0.1 704,918 - HGI48_RS03345 0.30 +0.1 705,007 + HGI48_RS03345 0.38 +0.1 705,007 + HGI48_RS03345 0.38 -0.1 705,008 - HGI48_RS03345 0.39 -0.1 705,156 - HGI48_RS03345 0.53 -0.8 705,164 - HGI48_RS03345 0.54 -1.9 705,164 - HGI48_RS03345 0.54 -0.5 705,250 - HGI48_RS03345 0.63 -0.1 705,250 - HGI48_RS03345 0.63 -0.1 705,252 + HGI48_RS03345 0.63 -0.4 705,253 - HGI48_RS03345 0.63 +0.9 705,253 - HGI48_RS03345 0.63 -0.1 705,253 - HGI48_RS03345 0.63 +0.3 705,253 - HGI48_RS03345 0.63 -0.5 705,263 - +1.5 705,263 - HGI48_RS03345 0.64 -1.9 705,312 + +0.9 705,312 + HGI48_RS03345 0.69 +1.1 705,313 - HGI48_RS03345 0.69 +0.6 705,440 - HGI48_RS03345 0.82 +0.4 705,450 + HGI48_RS03345 0.83 +0.1 705,450 + HGI48_RS03345 0.83 +0.9 705,450 + HGI48_RS03345 0.83 -0.5 705,450 + HGI48_RS03345 0.83 +0.1 705,450 + +0.9 705,454 + HGI48_RS03345 0.83 +1.5 705,455 - HGI48_RS03345 0.83 +0.3 705,540 + -0.3 705,541 - +0.9 705,541 - +0.3
Or see this region's nucleotide sequence