Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03320 and HGI48_RS03325 are separated by 70 nucleotides HGI48_RS03325 and HGI48_RS03330 are separated by 73 nucleotides HGI48_RS03330 and HGI48_RS03335 overlap by 32 nucleotides
HGI48_RS03320: HGI48_RS03320 - phosphopentomutase, at 700,438 to 701,661
_RS03320
HGI48_RS03325: HGI48_RS03325 - purine-nucleoside phosphorylase, at 701,732 to 702,457
_RS03325
HGI48_RS03330: HGI48_RS03330 - ribosomal protein S18-alanine N-acetyltransferase, at 702,531 to 702,974
_RS03330
HGI48_RS03335: HGI48_RS03335 - DNA polymerase III subunit psi, at 702,943 to 703,362
_RS03335
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 700.943 kb on - strand, within HGI48_RS03320 at 701.053 kb on + strand at 701.228 kb on - strand, within HGI48_RS03320 at 701.813 kb on + strand, within HGI48_RS03325 at 701.814 kb on - strand, within HGI48_RS03325 at 701.867 kb on - strand, within HGI48_RS03325 at 701.888 kb on + strand, within HGI48_RS03325 at 701.889 kb on - strand, within HGI48_RS03325 at 701.889 kb on - strand, within HGI48_RS03325 at 701.949 kb on - strand, within HGI48_RS03325 at 702.095 kb on - strand at 702.212 kb on + strand, within HGI48_RS03325 at 702.212 kb on + strand at 702.290 kb on + strand, within HGI48_RS03325 at 702.291 kb on - strand, within HGI48_RS03325 at 702.349 kb on + strand, within HGI48_RS03325 at 702.466 kb on + strand at 702.467 kb on - strand at 702.469 kb on + strand at 702.470 kb on - strand at 702.470 kb on - strand at 702.470 kb on - strand at 702.470 kb on - strand at 702.506 kb on + strand at 702.506 kb on + strand at 702.506 kb on + strand at 702.507 kb on - strand at 702.507 kb on - strand at 702.587 kb on - strand, within HGI48_RS03330 at 702.589 kb on + strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.632 kb on - strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.782 kb on + strand at 702.782 kb on + strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.795 kb on + strand, within HGI48_RS03330 at 702.796 kb on - strand, within HGI48_RS03330 at 702.798 kb on + strand, within HGI48_RS03330 at 702.798 kb on + strand at 702.798 kb on + strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.815 kb on - strand, within HGI48_RS03330 at 702.913 kb on - strand, within HGI48_RS03330 at 703.368 kb on - strand at 703.401 kb on + strand at 703.420 kb on + strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.436 kb on + strand at 703.436 kb on + strand at 703.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 700,943 - HGI48_RS03320 0.41 +0.6 701,053 + +0.9 701,228 - HGI48_RS03320 0.65 -0.4 701,813 + HGI48_RS03325 0.11 -1.1 701,814 - HGI48_RS03325 0.11 -0.9 701,867 - HGI48_RS03325 0.19 -1.9 701,888 + HGI48_RS03325 0.21 -1.1 701,889 - HGI48_RS03325 0.22 -0.1 701,889 - HGI48_RS03325 0.22 -2.5 701,949 - HGI48_RS03325 0.30 -0.1 702,095 - +1.5 702,212 + HGI48_RS03325 0.66 -0.1 702,212 + +0.3 702,290 + HGI48_RS03325 0.77 -0.4 702,291 - HGI48_RS03325 0.77 -0.9 702,349 + HGI48_RS03325 0.85 -1.1 702,466 + +0.7 702,467 - +0.2 702,469 + +0.2 702,470 - -2.5 702,470 - -0.7 702,470 - -1.6 702,470 - -0.1 702,506 + +0.1 702,506 + -1.1 702,506 + -1.0 702,507 - -0.4 702,507 - -1.5 702,587 - HGI48_RS03330 0.13 -0.6 702,589 + HGI48_RS03330 0.13 -1.5 702,590 - HGI48_RS03330 0.13 +1.2 702,590 - HGI48_RS03330 0.13 -0.5 702,632 - HGI48_RS03330 0.23 -1.7 702,675 + HGI48_RS03330 0.32 -0.0 702,675 + HGI48_RS03330 0.32 +0.9 702,676 - HGI48_RS03330 0.33 -0.5 702,676 - HGI48_RS03330 0.33 -0.1 702,676 - HGI48_RS03330 0.33 +1.5 702,782 + -0.1 702,782 + HGI48_RS03330 0.57 -1.7 702,783 - HGI48_RS03330 0.57 -1.9 702,783 - HGI48_RS03330 0.57 +0.0 702,795 + HGI48_RS03330 0.59 -1.0 702,796 - HGI48_RS03330 0.60 -0.4 702,798 + HGI48_RS03330 0.60 +0.7 702,798 + -0.7 702,798 + HGI48_RS03330 0.60 -0.7 702,799 - HGI48_RS03330 0.60 +0.2 702,799 - HGI48_RS03330 0.60 -1.7 702,799 - HGI48_RS03330 0.60 +1.1 702,814 + HGI48_RS03330 0.64 +1.0 702,814 + HGI48_RS03330 0.64 +0.4 702,815 - HGI48_RS03330 0.64 -0.3 702,913 - HGI48_RS03330 0.86 +0.0 703,368 - -1.9 703,401 + -0.1 703,420 + -2.2 703,421 - +0.9 703,421 - -0.1 703,421 - -0.2 703,436 + -0.3 703,436 + +0.5 703,437 - -0.5
Or see this region's nucleotide sequence