Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03250 and HGI48_RS03255 are separated by 108 nucleotides HGI48_RS03255 and HGI48_RS03260 are separated by 250 nucleotides HGI48_RS03260 and HGI48_RS03265 are separated by 127 nucleotides
HGI48_RS03250: HGI48_RS03250 - tRNA pseudouridine(55) synthase TruB, at 686,380 to 687,336
_RS03250
HGI48_RS03255: HGI48_RS03255 - 30S ribosomal protein S15, at 687,445 to 687,714
_RS03255
HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085
_RS03260
HGI48_RS03265: HGI48_RS03265 - lipoprotein NlpI, at 690,213 to 691,097
_RS03265
Position (kb) 687
688
689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 686.974 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.975 kb on - strand, within HGI48_RS03250 at 687.001 kb on + strand, within HGI48_RS03250 at 687.141 kb on + strand, within HGI48_RS03250 at 687.142 kb on - strand, within HGI48_RS03250 at 687.176 kb on + strand, within HGI48_RS03250 at 687.713 kb on - strand at 687.713 kb on - strand at 687.713 kb on - strand at 687.785 kb on - strand at 687.789 kb on + strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.801 kb on - strand at 687.804 kb on + strand at 687.804 kb on + strand at 687.805 kb on - strand at 687.818 kb on - strand at 687.849 kb on - strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.892 kb on - strand at 687.892 kb on - strand at 687.910 kb on + strand at 687.911 kb on - strand at 687.911 kb on - strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.925 kb on - strand at 687.951 kb on + strand at 687.951 kb on + strand at 687.962 kb on - strand at 687.962 kb on - strand at 688.006 kb on + strand at 688.064 kb on - strand at 688.064 kb on - strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.084 kb on - strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.162 kb on + strand at 688.163 kb on - strand at 688.163 kb on - strand at 688.166 kb on + strand at 688.167 kb on - strand at 688.167 kb on - strand at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand, within HGI48_RS03260 at 688.430 kb on + strand, within HGI48_RS03260 at 688.430 kb on + strand, within HGI48_RS03260 at 688.431 kb on - strand, within HGI48_RS03260 at 688.445 kb on + strand, within HGI48_RS03260 at 688.445 kb on + strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.679 kb on - strand, within HGI48_RS03260 at 688.764 kb on - strand, within HGI48_RS03260 at 688.890 kb on + strand, within HGI48_RS03260 at 688.891 kb on - strand, within HGI48_RS03260 at 688.891 kb on - strand at 689.057 kb on - strand, within HGI48_RS03260 at 689.080 kb on + strand, within HGI48_RS03260 at 689.102 kb on + strand, within HGI48_RS03260 at 689.103 kb on - strand, within HGI48_RS03260 at 689.103 kb on - strand, within HGI48_RS03260 at 689.117 kb on + strand, within HGI48_RS03260 at 689.137 kb on + strand, within HGI48_RS03260 at 689.185 kb on + strand, within HGI48_RS03260 at 689.232 kb on - strand, within HGI48_RS03260 at 689.281 kb on + strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.371 kb on - strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand at 689.388 kb on - strand, within HGI48_RS03260 at 689.590 kb on + strand, within HGI48_RS03260 at 689.591 kb on - strand, within HGI48_RS03260 at 689.743 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.838 kb on - strand, within HGI48_RS03260 at 689.838 kb on - strand at 689.838 kb on - strand, within HGI48_RS03260 at 689.845 kb on + strand, within HGI48_RS03260 at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.915 kb on - strand at 689.915 kb on - strand at 689.957 kb on + strand at 689.979 kb on + strand at 689.991 kb on + strand at 689.992 kb on - strand at 690.031 kb on - strand at 690.083 kb on + strand at 690.083 kb on + strand at 690.084 kb on - strand at 690.084 kb on - strand at 690.113 kb on - strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.135 kb on - strand at 690.135 kb on - strand at 690.238 kb on - strand at 690.254 kb on + strand at 690.255 kb on - strand at 690.381 kb on - strand, within HGI48_RS03265 at 690.403 kb on + strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.408 kb on + strand, within HGI48_RS03265 at 690.513 kb on + strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.581 kb on - strand, within HGI48_RS03265 at 690.598 kb on - strand, within HGI48_RS03265 at 690.604 kb on - strand, within HGI48_RS03265 at 690.634 kb on - strand, within HGI48_RS03265 at 690.866 kb on + strand, within HGI48_RS03265 at 690.881 kb on + strand, within HGI48_RS03265 at 690.928 kb on - strand at 690.932 kb on - strand, within HGI48_RS03265 at 690.932 kb on - strand, within HGI48_RS03265 at 690.936 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.946 kb on + strand at 690.946 kb on + strand at 690.946 kb on + strand, within HGI48_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 686,974 + HGI48_RS03250 0.62 +0.1 686,974 + HGI48_RS03250 0.62 +1.2 686,975 - HGI48_RS03250 0.62 +1.6 687,001 + HGI48_RS03250 0.65 +0.3 687,141 + HGI48_RS03250 0.80 +0.6 687,142 - HGI48_RS03250 0.80 +0.1 687,176 + HGI48_RS03250 0.83 -0.1 687,713 - -1.3 687,713 - -0.3 687,713 - +0.2 687,785 - +0.3 687,789 + -1.9 687,790 - -1.1 687,790 - +1.1 687,790 - +0.5 687,790 - +0.1 687,790 - -0.7 687,790 - -1.3 687,800 + -1.1 687,800 + +0.5 687,800 + -0.4 687,801 - -0.1 687,804 + -0.2 687,804 + -1.1 687,805 - -1.7 687,818 - -1.7 687,849 - +1.2 687,891 + -0.2 687,891 + -1.7 687,891 + -0.5 687,891 + +1.5 687,891 + +0.9 687,891 + +0.1 687,892 - -0.9 687,892 - +0.1 687,910 + +0.3 687,911 - -1.4 687,911 - -0.3 687,924 + -0.3 687,924 + -0.3 687,924 + -0.7 687,925 - -1.7 687,951 + -1.4 687,951 + +0.3 687,962 - +0.3 687,962 - +0.2 688,006 + +0.4 688,064 - -1.4 688,064 - -2.3 688,066 + +0.9 688,066 + -0.9 688,066 + +0.3 688,084 - +0.1 688,151 + -1.4 688,151 + -1.4 688,151 + -2.1 688,152 - +0.0 688,152 - -1.1 688,152 - -0.9 688,152 - -1.0 688,152 - +1.3 688,152 - -1.4 688,162 + +1.1 688,163 - -0.7 688,163 - -1.0 688,166 + -0.9 688,167 - -1.4 688,167 - +0.3 688,354 + HGI48_RS03260 0.18 -0.4 688,354 + HGI48_RS03260 0.18 -1.1 688,354 + HGI48_RS03260 0.18 -0.3 688,354 + HGI48_RS03260 0.18 -2.5 688,354 + -0.7 688,355 - HGI48_RS03260 0.18 -1.9 688,355 - +0.3 688,355 - HGI48_RS03260 0.18 +0.3 688,355 - HGI48_RS03260 0.18 +0.4 688,355 - HGI48_RS03260 0.18 +0.4 688,430 + HGI48_RS03260 0.22 -1.0 688,430 + HGI48_RS03260 0.22 -0.4 688,431 - HGI48_RS03260 0.22 -1.0 688,445 + HGI48_RS03260 0.23 +0.5 688,445 + HGI48_RS03260 0.23 -1.5 688,446 - HGI48_RS03260 0.23 -1.9 688,446 - HGI48_RS03260 0.23 -1.9 688,446 - HGI48_RS03260 0.23 -1.9 688,446 - HGI48_RS03260 0.23 +1.6 688,446 - +1.6 688,446 - HGI48_RS03260 0.23 -2.1 688,446 - HGI48_RS03260 0.23 -1.4 688,446 - HGI48_RS03260 0.23 +0.1 688,446 - HGI48_RS03260 0.23 +0.5 688,679 - HGI48_RS03260 0.34 -1.4 688,764 - HGI48_RS03260 0.38 -0.4 688,890 + HGI48_RS03260 0.44 -1.4 688,891 - HGI48_RS03260 0.44 -2.9 688,891 - +0.3 689,057 - HGI48_RS03260 0.51 -0.5 689,080 + HGI48_RS03260 0.53 +0.7 689,102 + HGI48_RS03260 0.54 +0.9 689,103 - HGI48_RS03260 0.54 -0.4 689,103 - HGI48_RS03260 0.54 -0.4 689,117 + HGI48_RS03260 0.54 -0.7 689,137 + HGI48_RS03260 0.55 +0.5 689,185 + HGI48_RS03260 0.58 -1.1 689,232 - HGI48_RS03260 0.60 -1.2 689,281 + HGI48_RS03260 0.62 +0.1 689,282 - HGI48_RS03260 0.62 -1.1 689,282 - HGI48_RS03260 0.62 -0.7 689,371 - HGI48_RS03260 0.66 -2.1 689,387 + HGI48_RS03260 0.67 -1.3 689,387 + HGI48_RS03260 0.67 +1.1 689,387 + HGI48_RS03260 0.67 -0.9 689,387 + HGI48_RS03260 0.67 +0.3 689,387 + HGI48_RS03260 0.67 -0.1 689,388 - HGI48_RS03260 0.67 +0.6 689,388 - HGI48_RS03260 0.67 +0.9 689,388 - +0.3 689,388 - HGI48_RS03260 0.67 +0.1 689,590 + HGI48_RS03260 0.77 -0.7 689,591 - HGI48_RS03260 0.77 -1.4 689,743 + HGI48_RS03260 0.84 +0.3 689,833 + HGI48_RS03260 0.88 -0.9 689,833 + HGI48_RS03260 0.88 +0.1 689,837 + HGI48_RS03260 0.88 -1.7 689,837 + HGI48_RS03260 0.88 -1.7 689,837 + HGI48_RS03260 0.88 +1.1 689,837 + HGI48_RS03260 0.88 -1.0 689,837 + HGI48_RS03260 0.88 -0.9 689,838 - HGI48_RS03260 0.88 -1.1 689,838 - +0.9 689,838 - HGI48_RS03260 0.88 -1.2 689,845 + HGI48_RS03260 0.89 +1.2 689,914 + -0.4 689,914 + +0.9 689,914 + +0.6 689,914 + -0.3 689,915 - -1.9 689,915 - +0.9 689,957 + -1.6 689,979 + +0.9 689,991 + -1.7 689,992 - +0.3 690,031 - -2.4 690,083 + -1.7 690,083 + -0.7 690,084 - +0.9 690,084 - +1.5 690,113 - -1.7 690,134 + -0.7 690,134 + -0.4 690,134 + -1.5 690,135 - -2.1 690,135 - -1.1 690,238 - -1.7 690,254 + -0.9 690,255 - -1.9 690,381 - HGI48_RS03265 0.19 +0.1 690,403 + HGI48_RS03265 0.21 -1.7 690,407 - HGI48_RS03265 0.22 -2.3 690,407 - HGI48_RS03265 0.22 -3.7 690,408 + HGI48_RS03265 0.22 -0.1 690,513 + HGI48_RS03265 0.34 -1.7 690,526 - HGI48_RS03265 0.35 -2.6 690,526 - HGI48_RS03265 0.35 -2.8 690,526 - HGI48_RS03265 0.35 -0.1 690,581 - HGI48_RS03265 0.42 -2.6 690,598 - HGI48_RS03265 0.44 -0.4 690,604 - HGI48_RS03265 0.44 -0.5 690,634 - HGI48_RS03265 0.48 -1.7 690,866 + HGI48_RS03265 0.74 -5.1 690,881 + HGI48_RS03265 0.75 +0.3 690,928 - -0.1 690,932 - HGI48_RS03265 0.81 -0.9 690,932 - HGI48_RS03265 0.81 -1.9 690,936 - HGI48_RS03265 0.82 -1.9 690,943 - HGI48_RS03265 0.82 -0.4 690,943 - HGI48_RS03265 0.82 -0.4 690,946 + -0.1 690,946 + -0.7 690,946 + HGI48_RS03265 0.83 -2.3
Or see this region's nucleotide sequence