Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03185 and HGI48_RS03190 are separated by 123 nucleotides HGI48_RS03190 and HGI48_RS03195 are separated by 158 nucleotides HGI48_RS03195 and HGI48_RS03200 are separated by 47 nucleotides
HGI48_RS03185: HGI48_RS03185 - transcription elongation factor GreA, at 674,101 to 674,577
_RS03185
HGI48_RS03190: HGI48_RS03190 - ribosome assembly RNA-binding protein YhbY, at 674,701 to 674,994
_RS03190
HGI48_RS03195: HGI48_RS03195 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 675,153 to 675,782
_RS03195
HGI48_RS03200: HGI48_RS03200 - ATP-dependent zinc metalloprotease FtsH, at 675,830 to 677,782
_RS03200
Position (kb) 675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 674.242 kb on + strand at 674.243 kb on - strand, within HGI48_RS03185 at 674.332 kb on - strand, within HGI48_RS03185 at 674.414 kb on - strand, within HGI48_RS03185 at 674.418 kb on + strand, within HGI48_RS03185 at 674.419 kb on - strand, within HGI48_RS03185 at 674.419 kb on - strand, within HGI48_RS03185 at 674.457 kb on + strand, within HGI48_RS03185 at 674.457 kb on + strand, within HGI48_RS03185 at 674.457 kb on + strand, within HGI48_RS03185 at 674.458 kb on - strand, within HGI48_RS03185 at 674.493 kb on - strand, within HGI48_RS03185 at 674.543 kb on + strand at 674.543 kb on + strand at 674.544 kb on - strand at 674.544 kb on - strand at 674.544 kb on - strand at 674.569 kb on + strand at 674.569 kb on + strand at 674.570 kb on - strand at 674.610 kb on + strand at 674.610 kb on + strand at 674.610 kb on + strand at 674.741 kb on + strand, within HGI48_RS03190 at 674.893 kb on + strand at 674.893 kb on + strand, within HGI48_RS03190 at 674.893 kb on + strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.928 kb on + strand, within HGI48_RS03190 at 674.929 kb on - strand, within HGI48_RS03190 at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.114 kb on - strand at 675.117 kb on + strand at 675.117 kb on + strand at 675.117 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.124 kb on - strand at 675.780 kb on + strand at 675.780 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 674,242 + +0.9 674,243 - HGI48_RS03185 0.30 -0.7 674,332 - HGI48_RS03185 0.48 -0.4 674,414 - HGI48_RS03185 0.66 -0.3 674,418 + HGI48_RS03185 0.66 -1.1 674,419 - HGI48_RS03185 0.67 -1.4 674,419 - HGI48_RS03185 0.67 -2.1 674,457 + HGI48_RS03185 0.75 -1.0 674,457 + HGI48_RS03185 0.75 +0.1 674,457 + HGI48_RS03185 0.75 +0.3 674,458 - HGI48_RS03185 0.75 -0.7 674,493 - HGI48_RS03185 0.82 -0.3 674,543 + -0.4 674,543 + -1.1 674,544 - +1.6 674,544 - +0.0 674,544 - -0.9 674,569 + -0.5 674,569 + -2.4 674,570 - -0.8 674,610 + -1.9 674,610 + -0.6 674,610 + +0.1 674,741 + HGI48_RS03190 0.14 -1.4 674,893 + +0.9 674,893 + HGI48_RS03190 0.65 +0.5 674,893 + HGI48_RS03190 0.65 +0.4 674,894 - HGI48_RS03190 0.66 -1.1 674,894 - HGI48_RS03190 0.66 -0.4 674,894 - HGI48_RS03190 0.66 +0.7 674,928 + HGI48_RS03190 0.77 -0.1 674,929 - HGI48_RS03190 0.78 -0.3 675,113 + -0.1 675,113 + -0.6 675,113 + +1.4 675,113 + -1.2 675,113 + -1.7 675,113 + +1.6 675,113 + -1.2 675,113 + -0.7 675,113 + -0.1 675,113 + -0.6 675,114 - +1.1 675,117 + -0.1 675,117 + -1.7 675,117 + +0.1 675,123 + +1.5 675,123 + +1.9 675,123 + +1.6 675,123 + -1.1 675,123 + -0.7 675,124 - -0.1 675,780 + +0.3 675,780 + +0.2
Or see this region's nucleotide sequence