Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03045

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03035 and HGI48_RS03040 overlap by 4 nucleotidesHGI48_RS03040 and HGI48_RS03045 overlap by 8 nucleotidesHGI48_RS03045 and HGI48_RS03050 overlap by 4 nucleotides HGI48_RS03035: HGI48_RS03035 - GPW/gp25 family protein, at 647,028 to 647,378 _RS03035 HGI48_RS03040: HGI48_RS03040 - baseplate assembly protein, at 647,375 to 648,283 _RS03040 HGI48_RS03045: HGI48_RS03045 - phage tail protein I, at 648,276 to 648,884 _RS03045 HGI48_RS03050: HGI48_RS03050 - phage tail protein, at 648,881 to 650,575 _RS03050 Position (kb) 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 647.465 kb on + strandat 647.547 kb on + strand, within HGI48_RS03040at 647.548 kb on - strand, within HGI48_RS03040at 647.571 kb on + strandat 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.632 kb on + strand, within HGI48_RS03040at 647.650 kb on - strand, within HGI48_RS03040at 647.650 kb on - strand, within HGI48_RS03040at 647.660 kb on + strandat 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.661 kb on - strand, within HGI48_RS03040at 647.661 kb on - strand, within HGI48_RS03040at 647.661 kb on - strandat 647.661 kb on - strand, within HGI48_RS03040at 647.682 kb on + strand, within HGI48_RS03040at 647.682 kb on + strand, within HGI48_RS03040at 647.715 kb on + strand, within HGI48_RS03040at 647.804 kb on + strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.953 kb on + strand, within HGI48_RS03040at 647.954 kb on - strand, within HGI48_RS03040at 648.018 kb on - strand, within HGI48_RS03040at 648.019 kb on + strand, within HGI48_RS03040at 648.019 kb on + strand, within HGI48_RS03040at 648.020 kb on - strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.101 kb on + strand, within HGI48_RS03040at 648.102 kb on - strandat 648.102 kb on - strand, within HGI48_RS03040at 648.152 kb on + strand, within HGI48_RS03040at 648.152 kb on + strand, within HGI48_RS03040at 648.153 kb on - strand, within HGI48_RS03040at 648.153 kb on - strand, within HGI48_RS03040at 648.178 kb on - strand, within HGI48_RS03040at 648.240 kb on - strandat 648.282 kb on - strandat 648.345 kb on - strand, within HGI48_RS03045at 648.376 kb on + strand, within HGI48_RS03045at 648.376 kb on + strand, within HGI48_RS03045at 648.377 kb on - strand, within HGI48_RS03045at 648.485 kb on + strand, within HGI48_RS03045at 648.486 kb on - strand, within HGI48_RS03045at 648.486 kb on - strand, within HGI48_RS03045at 648.512 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.518 kb on + strand, within HGI48_RS03045at 648.519 kb on - strand, within HGI48_RS03045at 648.519 kb on - strand, within HGI48_RS03045at 648.519 kb on - strand, within HGI48_RS03045at 648.519 kb on - strand, within HGI48_RS03045at 648.519 kb on - strand, within HGI48_RS03045at 648.657 kb on + strand, within HGI48_RS03045at 648.769 kb on - strand, within HGI48_RS03045at 648.769 kb on - strand, within HGI48_RS03045at 648.792 kb on + strand, within HGI48_RS03045at 648.792 kb on + strand, within HGI48_RS03045at 648.793 kb on - strand, within HGI48_RS03045at 648.793 kb on - strand, within HGI48_RS03045at 648.793 kb on - strand, within HGI48_RS03045at 648.793 kb on - strand, within HGI48_RS03045at 648.793 kb on - strand, within HGI48_RS03045at 648.798 kb on + strand, within HGI48_RS03045at 648.799 kb on - strand, within HGI48_RS03045at 648.815 kb on + strandat 648.818 kb on + strand, within HGI48_RS03045at 648.819 kb on - strand, within HGI48_RS03045at 648.819 kb on - strandat 648.819 kb on - strandat 648.850 kb on + strandat 648.850 kb on + strandat 648.850 kb on + strandat 648.850 kb on + strandat 648.851 kb on - strandat 648.851 kb on - strandat 648.851 kb on - strandat 648.851 kb on - strandat 648.875 kb on - strandat 648.893 kb on + strandat 648.893 kb on + strandat 648.893 kb on + strandat 648.893 kb on + strandat 648.893 kb on + strandat 648.894 kb on - strandat 648.894 kb on - strandat 648.896 kb on + strandat 648.896 kb on + strandat 648.897 kb on - strandat 648.897 kb on - strandat 648.897 kb on - strandat 648.911 kb on - strandat 648.911 kb on - strandat 648.961 kb on - strandat 648.967 kb on + strandat 649.099 kb on + strand, within HGI48_RS03050at 649.099 kb on + strand, within HGI48_RS03050at 649.208 kb on + strand, within HGI48_RS03050at 649.209 kb on - strand, within HGI48_RS03050at 649.209 kb on - strand, within HGI48_RS03050at 649.221 kb on + strand, within HGI48_RS03050at 649.222 kb on - strand, within HGI48_RS03050at 649.333 kb on + strand, within HGI48_RS03050at 649.333 kb on + strandat 649.364 kb on + strand, within HGI48_RS03050at 649.364 kb on + strand, within HGI48_RS03050at 649.365 kb on - strand, within HGI48_RS03050at 649.365 kb on - strand, within HGI48_RS03050at 649.454 kb on + strand, within HGI48_RS03050at 649.508 kb on + strand, within HGI48_RS03050at 649.509 kb on - strand, within HGI48_RS03050at 649.518 kb on + strand, within HGI48_RS03050at 649.654 kb on + strand, within HGI48_RS03050at 649.691 kb on + strand, within HGI48_RS03050at 649.691 kb on + strand, within HGI48_RS03050at 649.691 kb on + strand, within HGI48_RS03050at 649.691 kb on + strandat 649.692 kb on - strand, within HGI48_RS03050at 649.692 kb on - strandat 649.692 kb on - strand, within HGI48_RS03050at 649.692 kb on - strand, within HGI48_RS03050at 649.692 kb on - strand, within HGI48_RS03050at 649.693 kb on + strand, within HGI48_RS03050at 649.693 kb on + strand, within HGI48_RS03050at 649.693 kb on + strandat 649.693 kb on + strand, within HGI48_RS03050at 649.693 kb on + strand, within HGI48_RS03050at 649.714 kb on + strand, within HGI48_RS03050at 649.775 kb on + strand, within HGI48_RS03050at 649.776 kb on - strand, within HGI48_RS03050at 649.776 kb on - strand, within HGI48_RS03050at 649.776 kb on - strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.819 kb on + strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.820 kb on - strand, within HGI48_RS03050at 649.821 kb on + strand, within HGI48_RS03050at 649.821 kb on + strand, within HGI48_RS03050at 649.821 kb on + strand, within HGI48_RS03050at 649.821 kb on + strand, within HGI48_RS03050at 649.821 kb on + strand, within HGI48_RS03050at 649.822 kb on - strand, within HGI48_RS03050at 649.822 kb on - strand, within HGI48_RS03050at 649.822 kb on - strand, within HGI48_RS03050at 649.822 kb on - strand, within HGI48_RS03050at 649.823 kb on + strand, within HGI48_RS03050at 649.823 kb on + strandat 649.823 kb on + strand, within HGI48_RS03050at 649.824 kb on - strandat 649.824 kb on - strand, within HGI48_RS03050at 649.824 kb on - strand, within HGI48_RS03050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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647,465 + -0.1
647,547 + HGI48_RS03040 0.19 -0.1
647,548 - HGI48_RS03040 0.19 -1.7
647,571 + +2.1
647,571 + HGI48_RS03040 0.22 +0.6
647,571 + HGI48_RS03040 0.22 -0.1
647,571 + HGI48_RS03040 0.22 +0.5
647,571 + HGI48_RS03040 0.22 +0.6
647,632 + HGI48_RS03040 0.28 +1.1
647,650 - HGI48_RS03040 0.30 -0.5
647,650 - HGI48_RS03040 0.30 -0.8
647,660 + +1.6
647,660 + HGI48_RS03040 0.31 -0.2
647,660 + HGI48_RS03040 0.31 +0.9
647,660 + HGI48_RS03040 0.31 -0.2
647,660 + HGI48_RS03040 0.31 -1.3
647,660 + HGI48_RS03040 0.31 +0.9
647,661 - HGI48_RS03040 0.31 -1.4
647,661 - HGI48_RS03040 0.31 +0.2
647,661 - +0.9
647,661 - HGI48_RS03040 0.31 +0.5
647,682 + HGI48_RS03040 0.34 +1.2
647,682 + HGI48_RS03040 0.34 +0.5
647,715 + HGI48_RS03040 0.37 -0.9
647,804 + HGI48_RS03040 0.47 +0.2
647,805 - HGI48_RS03040 0.47 -0.4
647,805 - HGI48_RS03040 0.47 +0.9
647,805 - HGI48_RS03040 0.47 +0.3
647,953 + HGI48_RS03040 0.64 -0.3
647,954 - HGI48_RS03040 0.64 -1.7
648,018 - HGI48_RS03040 0.71 -0.5
648,019 + HGI48_RS03040 0.71 -1.1
648,019 + HGI48_RS03040 0.71 -1.1
648,020 - HGI48_RS03040 0.71 -0.3
648,038 + HGI48_RS03040 0.73 +0.3
648,038 + HGI48_RS03040 0.73 -1.4
648,038 + HGI48_RS03040 0.73 +0.1
648,038 + HGI48_RS03040 0.73 -0.4
648,038 + HGI48_RS03040 0.73 -2.3
648,038 + HGI48_RS03040 0.73 -0.7
648,039 - HGI48_RS03040 0.73 +0.5
648,039 - HGI48_RS03040 0.73 -0.5
648,039 - HGI48_RS03040 0.73 -0.2
648,101 + HGI48_RS03040 0.80 -0.5
648,102 - +0.3
648,102 - HGI48_RS03040 0.80 -1.3
648,152 + HGI48_RS03040 0.85 -1.7
648,152 + HGI48_RS03040 0.85 -0.9
648,153 - HGI48_RS03040 0.86 -0.5
648,153 - HGI48_RS03040 0.86 -0.3
648,178 - HGI48_RS03040 0.88 +0.3
648,240 - -1.3
648,282 - +0.0
648,345 - HGI48_RS03045 0.11 -1.4
648,376 + HGI48_RS03045 0.16 +0.2
648,376 + HGI48_RS03045 0.16 +0.6
648,377 - HGI48_RS03045 0.17 -1.4
648,485 + HGI48_RS03045 0.34 +0.3
648,486 - HGI48_RS03045 0.34 -1.1
648,486 - HGI48_RS03045 0.34 +0.7
648,512 + HGI48_RS03045 0.39 -1.5
648,518 + HGI48_RS03045 0.40 -0.1
648,518 + HGI48_RS03045 0.40 -0.1
648,518 + HGI48_RS03045 0.40 -0.7
648,518 + HGI48_RS03045 0.40 -0.1
648,518 + HGI48_RS03045 0.40 +0.4
648,518 + HGI48_RS03045 0.40 -2.1
648,518 + HGI48_RS03045 0.40 +0.5
648,519 - HGI48_RS03045 0.40 -0.4
648,519 - HGI48_RS03045 0.40 -0.9
648,519 - HGI48_RS03045 0.40 -0.6
648,519 - HGI48_RS03045 0.40 -0.0
648,519 - HGI48_RS03045 0.40 -0.4
648,657 + HGI48_RS03045 0.63 -1.1
648,769 - HGI48_RS03045 0.81 +0.0
648,769 - HGI48_RS03045 0.81 +0.5
648,792 + HGI48_RS03045 0.85 -1.3
648,792 + HGI48_RS03045 0.85 -0.7
648,793 - HGI48_RS03045 0.85 +0.9
648,793 - HGI48_RS03045 0.85 +0.3
648,793 - HGI48_RS03045 0.85 -0.4
648,793 - HGI48_RS03045 0.85 -0.4
648,793 - HGI48_RS03045 0.85 -0.7
648,798 + HGI48_RS03045 0.86 -0.1
648,799 - HGI48_RS03045 0.86 -1.3
648,815 + +2.3
648,818 + HGI48_RS03045 0.89 -0.4
648,819 - HGI48_RS03045 0.89 -0.8
648,819 - +2.5
648,819 - +0.3
648,850 + -0.4
648,850 + -0.2
648,850 + -0.2
648,850 + -0.3
648,851 - +0.5
648,851 - -0.3
648,851 - +0.9
648,851 - +1.2
648,875 - -1.4
648,893 + -0.4
648,893 + +0.9
648,893 + +0.2
648,893 + -0.1
648,893 + +0.3
648,894 - -0.3
648,894 - +0.5
648,896 + -1.4
648,896 + -0.1
648,897 - -0.4
648,897 - +0.2
648,897 - -0.7
648,911 - -2.0
648,911 - -0.4
648,961 - +1.5
648,967 + +1.5
649,099 + HGI48_RS03050 0.13 +1.5
649,099 + HGI48_RS03050 0.13 +0.5
649,208 + HGI48_RS03050 0.19 -1.7
649,209 - HGI48_RS03050 0.19 -0.4
649,209 - HGI48_RS03050 0.19 -0.3
649,221 + HGI48_RS03050 0.20 -1.4
649,222 - HGI48_RS03050 0.20 -0.4
649,333 + HGI48_RS03050 0.27 +0.2
649,333 + +1.3
649,364 + HGI48_RS03050 0.28 +0.0
649,364 + HGI48_RS03050 0.28 +0.6
649,365 - HGI48_RS03050 0.29 -1.4
649,365 - HGI48_RS03050 0.29 -2.1
649,454 + HGI48_RS03050 0.34 -0.7
649,508 + HGI48_RS03050 0.37 +0.3
649,509 - HGI48_RS03050 0.37 +0.9
649,518 + HGI48_RS03050 0.38 -0.8
649,654 + HGI48_RS03050 0.46 -1.4
649,691 + HGI48_RS03050 0.48 +0.2
649,691 + HGI48_RS03050 0.48 +0.9
649,691 + HGI48_RS03050 0.48 -0.7
649,691 + -0.1
649,692 - HGI48_RS03050 0.48 -0.1
649,692 - +0.3
649,692 - HGI48_RS03050 0.48 +0.5
649,692 - HGI48_RS03050 0.48 +0.3
649,692 - HGI48_RS03050 0.48 +0.6
649,693 + HGI48_RS03050 0.48 -0.1
649,693 + HGI48_RS03050 0.48 -0.4
649,693 + -0.1
649,693 + HGI48_RS03050 0.48 -0.8
649,693 + HGI48_RS03050 0.48 -0.4
649,714 + HGI48_RS03050 0.49 -0.1
649,775 + HGI48_RS03050 0.53 -2.3
649,776 - HGI48_RS03050 0.53 -0.4
649,776 - HGI48_RS03050 0.53 -1.4
649,776 - HGI48_RS03050 0.53 -0.2
649,819 + HGI48_RS03050 0.55 +0.2
649,819 + HGI48_RS03050 0.55 +0.0
649,819 + HGI48_RS03050 0.55 -0.3
649,819 + HGI48_RS03050 0.55 -0.9
649,819 + HGI48_RS03050 0.55 -0.1
649,819 + HGI48_RS03050 0.55 -1.2
649,819 + HGI48_RS03050 0.55 -0.2
649,819 + HGI48_RS03050 0.55 -0.8
649,819 + HGI48_RS03050 0.55 -0.4
649,819 + HGI48_RS03050 0.55 -1.1
649,820 - HGI48_RS03050 0.55 -1.4
649,820 - HGI48_RS03050 0.55 +0.7
649,820 - HGI48_RS03050 0.55 +0.5
649,820 - HGI48_RS03050 0.55 +1.1
649,820 - HGI48_RS03050 0.55 -1.0
649,820 - HGI48_RS03050 0.55 -1.1
649,820 - HGI48_RS03050 0.55 -0.4
649,821 + HGI48_RS03050 0.55 -0.1
649,821 + HGI48_RS03050 0.55 -0.4
649,821 + HGI48_RS03050 0.55 +0.1
649,821 + HGI48_RS03050 0.55 -0.3
649,821 + HGI48_RS03050 0.55 -0.9
649,822 - HGI48_RS03050 0.56 -0.4
649,822 - HGI48_RS03050 0.56 -0.0
649,822 - HGI48_RS03050 0.56 +0.2
649,822 - HGI48_RS03050 0.56 -0.5
649,823 + HGI48_RS03050 0.56 +0.3
649,823 + -0.7
649,823 + HGI48_RS03050 0.56 -0.7
649,824 - -0.7
649,824 - HGI48_RS03050 0.56 -0.4
649,824 - HGI48_RS03050 0.56 -1.4

Or see this region's nucleotide sequence