Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02565

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02560 and HGI48_RS02565 are separated by 59 nucleotidesHGI48_RS02565 and HGI48_RS02570 are separated by 302 nucleotides HGI48_RS02560: HGI48_RS02560 - ROK family transcriptional regulator, at 552,438 to 553,550 _RS02560 HGI48_RS02565: HGI48_RS02565 - N-acetylglucosamine kinase, at 553,610 to 554,497 _RS02565 HGI48_RS02570: HGI48_RS02570 - Gfo/Idh/MocA family oxidoreductase, at 554,800 to 555,951 _RS02570 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 552.643 kb on + strandat 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strand, within HGI48_RS02560at 552.643 kb on + strandat 552.644 kb on - strand, within HGI48_RS02560at 552.644 kb on - strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strandat 552.645 kb on + strand, within HGI48_RS02560at 552.645 kb on + strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strandat 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.646 kb on - strand, within HGI48_RS02560at 552.745 kb on - strand, within HGI48_RS02560at 552.923 kb on + strand, within HGI48_RS02560at 552.949 kb on + strand, within HGI48_RS02560at 552.949 kb on + strand, within HGI48_RS02560at 552.950 kb on - strand, within HGI48_RS02560at 552.982 kb on - strand, within HGI48_RS02560at 552.982 kb on - strand, within HGI48_RS02560at 553.039 kb on - strand, within HGI48_RS02560at 553.067 kb on + strand, within HGI48_RS02560at 553.068 kb on - strandat 553.118 kb on - strand, within HGI48_RS02560at 553.264 kb on - strand, within HGI48_RS02560at 553.389 kb on + strand, within HGI48_RS02560at 553.407 kb on - strand, within HGI48_RS02560at 553.454 kb on + strandat 553.454 kb on + strandat 553.454 kb on + strandat 553.455 kb on - strandat 553.455 kb on - strandat 553.470 kb on + strandat 553.523 kb on + strandat 553.533 kb on + strandat 553.653 kb on + strandat 553.654 kb on - strandat 553.654 kb on - strandat 553.654 kb on - strandat 553.654 kb on - strandat 553.691 kb on + strandat 553.692 kb on - strandat 553.794 kb on - strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strandat 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.939 kb on + strand, within HGI48_RS02565at 553.939 kb on + strandat 553.939 kb on + strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 554.018 kb on + strand, within HGI48_RS02565at 554.173 kb on + strand, within HGI48_RS02565at 554.173 kb on + strand, within HGI48_RS02565at 554.234 kb on + strand, within HGI48_RS02565at 554.235 kb on - strand, within HGI48_RS02565at 554.290 kb on + strand, within HGI48_RS02565at 554.291 kb on - strandat 554.291 kb on - strand, within HGI48_RS02565at 554.328 kb on - strand, within HGI48_RS02565at 554.328 kb on - strand, within HGI48_RS02565at 554.351 kb on - strand, within HGI48_RS02565at 554.383 kb on - strand, within HGI48_RS02565at 554.383 kb on - strand, within HGI48_RS02565at 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.485 kb on - strandat 554.485 kb on - strandat 554.489 kb on + strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.545 kb on + strandat 554.584 kb on + strandat 554.752 kb on + strandat 554.797 kb on + strandat 554.797 kb on + strandat 554.797 kb on + strandat 554.798 kb on - strandat 554.798 kb on - strandat 554.798 kb on - strandat 554.860 kb on - strandat 555.024 kb on + strand, within HGI48_RS02570at 555.024 kb on + strandat 555.025 kb on - strand, within HGI48_RS02570at 555.054 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.190 kb on + strand, within HGI48_RS02570at 555.191 kb on - strand, within HGI48_RS02570at 555.237 kb on + strandat 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.307 kb on + strandat 555.307 kb on + strandat 555.308 kb on - strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strandat 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strandat 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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552,643 + +0.3
552,643 + HGI48_RS02560 0.18 -0.9
552,643 + HGI48_RS02560 0.18 +0.1
552,643 + HGI48_RS02560 0.18 -1.4
552,643 + HGI48_RS02560 0.18 -0.2
552,643 + HGI48_RS02560 0.18 -0.9
552,643 + HGI48_RS02560 0.18 -1.4
552,643 + HGI48_RS02560 0.18 -2.3
552,643 + HGI48_RS02560 0.18 -0.1
552,643 + +0.9
552,644 - HGI48_RS02560 0.19 -0.0
552,644 - HGI48_RS02560 0.19 +0.0
552,645 + HGI48_RS02560 0.19 -0.6
552,645 + HGI48_RS02560 0.19 -0.1
552,645 + HGI48_RS02560 0.19 -1.7
552,645 + HGI48_RS02560 0.19 -0.2
552,645 + HGI48_RS02560 0.19 -0.1
552,645 + +1.3
552,645 + HGI48_RS02560 0.19 +0.1
552,645 + HGI48_RS02560 0.19 +1.4
552,646 - HGI48_RS02560 0.19 -0.1
552,646 - HGI48_RS02560 0.19 -0.3
552,646 - +1.5
552,646 - HGI48_RS02560 0.19 -1.9
552,646 - HGI48_RS02560 0.19 +0.3
552,646 - HGI48_RS02560 0.19 +0.9
552,646 - HGI48_RS02560 0.19 +0.5
552,646 - HGI48_RS02560 0.19 +0.9
552,646 - HGI48_RS02560 0.19 -0.6
552,646 - HGI48_RS02560 0.19 +0.7
552,646 - HGI48_RS02560 0.19 -0.1
552,745 - HGI48_RS02560 0.28 -1.5
552,923 + HGI48_RS02560 0.44 -0.6
552,949 + HGI48_RS02560 0.46 +0.1
552,949 + HGI48_RS02560 0.46 -0.1
552,950 - HGI48_RS02560 0.46 +0.6
552,982 - HGI48_RS02560 0.49 -0.9
552,982 - HGI48_RS02560 0.49 +1.2
553,039 - HGI48_RS02560 0.54 -1.9
553,067 + HGI48_RS02560 0.57 -1.4
553,068 - +0.9
553,118 - HGI48_RS02560 0.61 -0.4
553,264 - HGI48_RS02560 0.74 +0.2
553,389 + HGI48_RS02560 0.85 -0.1
553,407 - HGI48_RS02560 0.87 +0.7
553,454 + -0.1
553,454 + -1.7
553,454 + +0.2
553,455 - +0.3
553,455 - +0.5
553,470 + +0.5
553,523 + -0.1
553,533 + -1.5
553,653 + -1.7
553,654 - -0.4
553,654 - -1.7
553,654 - -0.7
553,654 - +0.6
553,691 + -2.5
553,692 - +0.2
553,794 - HGI48_RS02565 0.21 -0.1
553,829 + HGI48_RS02565 0.25 +0.6
553,829 + HGI48_RS02565 0.25 +0.3
553,829 + HGI48_RS02565 0.25 -0.7
553,829 + HGI48_RS02565 0.25 +0.2
553,830 - HGI48_RS02565 0.25 +0.1
553,830 - HGI48_RS02565 0.25 +0.3
553,830 - HGI48_RS02565 0.25 -0.1
553,830 - HGI48_RS02565 0.25 +0.5
553,830 - HGI48_RS02565 0.25 +0.9
553,830 - HGI48_RS02565 0.25 +0.2
553,830 - +0.3
553,830 - HGI48_RS02565 0.25 +1.1
553,830 - HGI48_RS02565 0.25 -0.1
553,939 + HGI48_RS02565 0.37 +0.4
553,939 + +0.9
553,939 + HGI48_RS02565 0.37 +0.9
553,940 - HGI48_RS02565 0.37 -0.9
553,940 - HGI48_RS02565 0.37 -2.5
553,940 - HGI48_RS02565 0.37 -1.2
553,940 - HGI48_RS02565 0.37 -0.3
554,018 + HGI48_RS02565 0.46 -0.8
554,173 + HGI48_RS02565 0.63 +0.4
554,173 + HGI48_RS02565 0.63 -0.1
554,234 + HGI48_RS02565 0.70 +0.1
554,235 - HGI48_RS02565 0.70 -1.8
554,290 + HGI48_RS02565 0.77 -2.0
554,291 - +1.6
554,291 - HGI48_RS02565 0.77 +0.5
554,328 - HGI48_RS02565 0.81 +0.9
554,328 - HGI48_RS02565 0.81 -1.1
554,351 - HGI48_RS02565 0.83 +0.1
554,383 - HGI48_RS02565 0.87 -1.4
554,383 - HGI48_RS02565 0.87 -2.7
554,484 + -0.4
554,484 + +0.5
554,484 + -0.7
554,484 + -0.2
554,484 + -0.7
554,484 + -1.9
554,485 - -1.1
554,485 - +1.3
554,489 + -1.3
554,490 - +0.4
554,490 - +0.7
554,490 - +0.9
554,490 - +0.3
554,545 + +0.3
554,584 + -0.1
554,752 + +1.2
554,797 + -1.7
554,797 + -1.5
554,797 + -0.8
554,798 - -2.0
554,798 - +0.3
554,798 - -1.9
554,860 - +0.9
555,024 + HGI48_RS02570 0.19 -0.4
555,024 + +0.9
555,025 - HGI48_RS02570 0.20 -0.2
555,054 - HGI48_RS02570 0.22 +0.9
555,065 - HGI48_RS02570 0.23 -1.3
555,065 - HGI48_RS02570 0.23 +0.1
555,065 - HGI48_RS02570 0.23 -0.3
555,190 + HGI48_RS02570 0.34 -0.9
555,191 - HGI48_RS02570 0.34 -1.4
555,237 + +0.9
555,238 - HGI48_RS02570 0.38 -1.1
555,238 - HGI48_RS02570 0.38 +0.4
555,238 - HGI48_RS02570 0.38 -0.1
555,307 + +0.3
555,307 + +0.9
555,308 - HGI48_RS02570 0.44 -2.1
555,328 + HGI48_RS02570 0.46 +0.2
555,328 + HGI48_RS02570 0.46 +0.0
555,328 + HGI48_RS02570 0.46 +0.5
555,328 + HGI48_RS02570 0.46 +0.3
555,329 - HGI48_RS02570 0.46 -0.1
555,329 - HGI48_RS02570 0.46 -0.7
555,329 - HGI48_RS02570 0.46 -1.7
555,329 - HGI48_RS02570 0.46 -0.3
555,329 - HGI48_RS02570 0.46 -0.4
555,330 + HGI48_RS02570 0.46 -0.9
555,330 + +1.9
555,330 + HGI48_RS02570 0.46 -0.0
555,330 + HGI48_RS02570 0.46 -2.1
555,331 - HGI48_RS02570 0.46 -1.1
555,331 - -0.1
555,331 - HGI48_RS02570 0.46 -1.9
555,331 - HGI48_RS02570 0.46 +0.5
555,331 - HGI48_RS02570 0.46 -0.3
555,453 + HGI48_RS02570 0.57 +0.7
555,453 + HGI48_RS02570 0.57 +0.1
555,475 + HGI48_RS02570 0.59 +0.1
555,475 + HGI48_RS02570 0.59 -0.4
555,484 - -0.7

Or see this region's nucleotide sequence