Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02505 and HGI48_RS02510 are separated by 79 nucleotides HGI48_RS02510 and HGI48_RS02515 are separated by 163 nucleotides HGI48_RS02515 and HGI48_RS02520 are separated by 4 nucleotides
HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014
_RS02505
HGI48_RS02510: HGI48_RS02510 - GntR family transcriptional regulator, at 542,094 to 542,792
_RS02510
HGI48_RS02515: HGI48_RS02515 - DUF2848 domain-containing protein, at 542,956 to 543,648
_RS02515
HGI48_RS02520: HGI48_RS02520 - amidase, at 543,653 to 545,020
_RS02520
Position (kb) 542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 542.013 kb on - strand at 542.130 kb on - strand at 542.163 kb on - strand at 542.297 kb on + strand, within HGI48_RS02510 at 542.297 kb on + strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.360 kb on + strand, within HGI48_RS02510 at 542.360 kb on + strand at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.460 kb on + strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.461 kb on - strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.496 kb on + strand, within HGI48_RS02510 at 542.496 kb on + strand at 542.538 kb on - strand, within HGI48_RS02510 at 542.538 kb on - strand, within HGI48_RS02510 at 542.567 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand at 542.613 kb on + strand, within HGI48_RS02510 at 542.645 kb on - strand, within HGI48_RS02510 at 542.658 kb on - strand, within HGI48_RS02510 at 542.660 kb on - strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand at 542.790 kb on + strand at 542.790 kb on + strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.792 kb on + strand at 542.793 kb on - strand at 542.804 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.833 kb on - strand at 542.833 kb on - strand at 542.845 kb on + strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.861 kb on - strand at 542.941 kb on - strand at 542.955 kb on + strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.976 kb on - strand at 543.072 kb on + strand at 543.073 kb on - strand, within HGI48_RS02515 at 543.073 kb on - strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.109 kb on - strand, within HGI48_RS02515 at 543.109 kb on - strand, within HGI48_RS02515 at 543.186 kb on + strand at 543.186 kb on + strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.209 kb on + strand, within HGI48_RS02515 at 543.210 kb on - strand, within HGI48_RS02515 at 543.210 kb on - strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.236 kb on - strand, within HGI48_RS02515 at 543.236 kb on - strand at 543.415 kb on + strand, within HGI48_RS02515 at 543.416 kb on - strand, within HGI48_RS02515 at 543.416 kb on - strand, within HGI48_RS02515 at 543.440 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand at 543.469 kb on + strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand at 543.616 kb on + strand at 543.616 kb on + strand at 543.639 kb on - strand at 543.687 kb on + strand at 543.687 kb on + strand at 543.688 kb on - strand at 543.688 kb on - strand at 543.757 kb on + strand at 543.758 kb on - strand at 543.803 kb on + strand, within HGI48_RS02520 at 543.804 kb on - strand, within HGI48_RS02520 at 543.804 kb on - strand, within HGI48_RS02520 at 544.036 kb on + strand, within HGI48_RS02520 at 544.037 kb on - strand, within HGI48_RS02520 at 544.053 kb on - strand, within HGI48_RS02520 at 544.079 kb on + strand, within HGI48_RS02520 at 544.080 kb on - strand, within HGI48_RS02520 at 544.080 kb on - strand at 544.175 kb on + strand, within HGI48_RS02520 at 544.176 kb on - strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand at 544.214 kb on - strand, within HGI48_RS02520 at 544.446 kb on + strand, within HGI48_RS02520 at 544.446 kb on + strand, within HGI48_RS02520 at 544.447 kb on - strand, within HGI48_RS02520 at 544.477 kb on + strand, within HGI48_RS02520 at 544.477 kb on + strand, within HGI48_RS02520 at 544.478 kb on - strand, within HGI48_RS02520 at 544.631 kb on + strand at 544.631 kb on + strand, within HGI48_RS02520 at 544.631 kb on + strand, within HGI48_RS02520 at 544.631 kb on + strand, within HGI48_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 542,013 - -0.2 542,130 - +0.3 542,163 - +0.2 542,297 + HGI48_RS02510 0.29 +0.3 542,297 + HGI48_RS02510 0.29 -0.8 542,298 - HGI48_RS02510 0.29 +0.0 542,298 - HGI48_RS02510 0.29 -0.8 542,298 - HGI48_RS02510 0.29 -1.4 542,360 + HGI48_RS02510 0.38 -0.1 542,360 + +0.3 542,361 - HGI48_RS02510 0.38 -0.1 542,361 - HGI48_RS02510 0.38 -1.1 542,361 - HGI48_RS02510 0.38 +0.3 542,361 - HGI48_RS02510 0.38 +0.9 542,460 + +0.9 542,461 - HGI48_RS02510 0.53 +0.6 542,461 - -0.7 542,461 - HGI48_RS02510 0.53 -0.1 542,496 + HGI48_RS02510 0.58 +0.2 542,496 + -0.1 542,538 - HGI48_RS02510 0.64 +2.1 542,538 - HGI48_RS02510 0.64 -0.4 542,567 + HGI48_RS02510 0.68 -1.3 542,580 + HGI48_RS02510 0.70 -1.9 542,580 + HGI48_RS02510 0.70 -2.0 542,580 + HGI48_RS02510 0.70 -1.4 542,580 + HGI48_RS02510 0.70 -0.4 542,580 + -0.7 542,581 - HGI48_RS02510 0.70 -1.4 542,581 - HGI48_RS02510 0.70 -1.1 542,581 - +0.9 542,613 + HGI48_RS02510 0.74 -1.8 542,645 - HGI48_RS02510 0.79 -0.7 542,658 - HGI48_RS02510 0.81 -0.5 542,660 - HGI48_RS02510 0.81 -1.1 542,695 + HGI48_RS02510 0.86 -0.4 542,695 + HGI48_RS02510 0.86 +0.5 542,695 + +2.1 542,696 - HGI48_RS02510 0.86 +0.6 542,696 - HGI48_RS02510 0.86 +0.5 542,696 - -0.7 542,790 + -2.1 542,790 + -0.1 542,791 - +1.3 542,791 - -1.4 542,791 - -0.3 542,791 - -3.3 542,791 - +0.3 542,791 - +1.9 542,792 + -0.4 542,793 - -0.1 542,804 + +1.2 542,828 + -0.1 542,828 + -1.7 542,828 + +0.2 542,828 + +1.2 542,829 - -0.2 542,829 - -0.2 542,829 - -1.1 542,829 - +0.2 542,832 + +0.7 542,832 + +1.4 542,832 + -0.7 542,832 + -0.0 542,832 + -1.7 542,832 + -0.7 542,832 + -1.7 542,832 + -0.1 542,832 + -0.4 542,832 + -0.9 542,832 + -0.9 542,833 - -0.1 542,833 - -1.7 542,845 + -1.7 542,846 - -0.2 542,846 - +0.2 542,846 - -2.3 542,849 + +0.2 542,849 + +0.7 542,849 + -0.5 542,849 + -0.4 542,850 - -0.3 542,850 - -0.9 542,850 - -1.4 542,850 - -0.7 542,861 - -0.7 542,941 - -1.4 542,955 + -0.1 542,956 - +0.2 542,956 - +0.7 542,956 - +0.4 542,976 - -1.1 543,072 + +0.3 543,073 - HGI48_RS02515 0.17 -0.4 543,073 - HGI48_RS02515 0.17 +0.4 543,108 + HGI48_RS02515 0.22 -1.4 543,108 + HGI48_RS02515 0.22 -0.5 543,108 + HGI48_RS02515 0.22 -1.5 543,109 - HGI48_RS02515 0.22 +0.5 543,109 - HGI48_RS02515 0.22 +0.9 543,186 + +0.3 543,186 + HGI48_RS02515 0.33 -1.9 543,187 - HGI48_RS02515 0.33 -1.3 543,187 - HGI48_RS02515 0.33 +0.8 543,187 - HGI48_RS02515 0.33 -0.2 543,209 + HGI48_RS02515 0.37 +0.8 543,210 - HGI48_RS02515 0.37 -1.1 543,210 - HGI48_RS02515 0.37 -0.1 543,235 + HGI48_RS02515 0.40 -0.8 543,235 + HGI48_RS02515 0.40 +0.7 543,235 + HGI48_RS02515 0.40 +1.1 543,235 + HGI48_RS02515 0.40 -0.1 543,235 + HGI48_RS02515 0.40 -1.2 543,235 + HGI48_RS02515 0.40 +0.7 543,235 + HGI48_RS02515 0.40 +0.4 543,235 + HGI48_RS02515 0.40 +0.6 543,235 + HGI48_RS02515 0.40 -0.5 543,235 + HGI48_RS02515 0.40 -0.4 543,236 - HGI48_RS02515 0.40 -2.8 543,236 - -0.7 543,415 + HGI48_RS02515 0.66 +0.4 543,416 - HGI48_RS02515 0.66 -0.3 543,416 - HGI48_RS02515 0.66 +0.5 543,440 + HGI48_RS02515 0.70 +0.1 543,469 + HGI48_RS02515 0.74 -0.7 543,469 + HGI48_RS02515 0.74 +0.9 543,469 + HGI48_RS02515 0.74 -0.5 543,469 + +0.9 543,469 + HGI48_RS02515 0.74 +0.5 543,470 - HGI48_RS02515 0.74 -1.1 543,470 - HGI48_RS02515 0.74 -1.7 543,470 - HGI48_RS02515 0.74 -1.3 543,470 - HGI48_RS02515 0.74 -0.7 543,470 - HGI48_RS02515 0.74 +0.5 543,470 - +0.9 543,616 + -1.0 543,616 + +0.5 543,639 - -2.1 543,687 + +0.3 543,687 + +0.2 543,688 - -1.1 543,688 - -0.7 543,757 + +0.2 543,758 - -0.8 543,803 + HGI48_RS02520 0.11 -0.1 543,804 - HGI48_RS02520 0.11 -0.3 543,804 - HGI48_RS02520 0.11 -0.3 544,036 + HGI48_RS02520 0.28 -0.3 544,037 - HGI48_RS02520 0.28 +0.7 544,053 - HGI48_RS02520 0.29 +0.2 544,079 + HGI48_RS02520 0.31 -0.7 544,080 - HGI48_RS02520 0.31 +0.2 544,080 - +2.3 544,175 + HGI48_RS02520 0.38 -0.3 544,176 - HGI48_RS02520 0.38 +0.4 544,209 + HGI48_RS02520 0.41 -3.0 544,209 + HGI48_RS02520 0.41 -0.1 544,209 + HGI48_RS02520 0.41 -0.8 544,210 - HGI48_RS02520 0.41 +0.1 544,210 - HGI48_RS02520 0.41 -1.0 544,210 - HGI48_RS02520 0.41 -0.3 544,214 - HGI48_RS02520 0.41 -0.3 544,214 - HGI48_RS02520 0.41 -0.1 544,214 - +2.9 544,214 - HGI48_RS02520 0.41 +1.1 544,446 + HGI48_RS02520 0.58 -0.2 544,446 + HGI48_RS02520 0.58 -0.7 544,447 - HGI48_RS02520 0.58 -0.3 544,477 + HGI48_RS02520 0.60 -0.6 544,477 + HGI48_RS02520 0.60 -2.4 544,478 - HGI48_RS02520 0.60 +0.1 544,631 + +0.9 544,631 + HGI48_RS02520 0.71 +0.9 544,631 + HGI48_RS02520 0.71 -0.1 544,631 + HGI48_RS02520 0.71 +0.1
Or see this region's nucleotide sequence