Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02500

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02495 and HGI48_RS02500 are separated by 17 nucleotidesHGI48_RS02500 and HGI48_RS02505 are separated by 108 nucleotides HGI48_RS02495: HGI48_RS02495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 538,677 to 539,711 _RS02495 HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751 _RS02500 HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014 _RS02505 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2at 538.862 kb on + strand, within HGI48_RS02495at 538.862 kb on + strand, within HGI48_RS02495at 538.863 kb on - strand, within HGI48_RS02495at 538.863 kb on - strand, within HGI48_RS02495at 539.040 kb on + strand, within HGI48_RS02495at 539.198 kb on - strand, within HGI48_RS02495at 539.226 kb on - strand, within HGI48_RS02495at 539.301 kb on + strand, within HGI48_RS02495at 539.301 kb on + strand, within HGI48_RS02495at 539.302 kb on - strand, within HGI48_RS02495at 539.302 kb on - strand, within HGI48_RS02495at 539.396 kb on + strand, within HGI48_RS02495at 539.688 kb on + strandat 539.770 kb on + strandat 539.770 kb on + strandat 539.838 kb on + strand, within HGI48_RS02500at 539.838 kb on + strand, within HGI48_RS02500at 539.839 kb on - strand, within HGI48_RS02500at 539.839 kb on - strand, within HGI48_RS02500at 539.913 kb on + strand, within HGI48_RS02500at 539.972 kb on + strand, within HGI48_RS02500at 539.973 kb on - strand, within HGI48_RS02500at 539.973 kb on - strand, within HGI48_RS02500at 539.973 kb on - strandat 540.021 kb on - strand, within HGI48_RS02500at 540.024 kb on + strand, within HGI48_RS02500at 540.024 kb on + strandat 540.024 kb on + strandat 540.024 kb on + strand, within HGI48_RS02500at 540.024 kb on + strand, within HGI48_RS02500at 540.025 kb on - strandat 540.025 kb on - strand, within HGI48_RS02500at 540.059 kb on - strand, within HGI48_RS02500at 540.083 kb on - strand, within HGI48_RS02500at 540.083 kb on - strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.195 kb on - strand, within HGI48_RS02500at 540.195 kb on - strand, within HGI48_RS02500at 540.350 kb on + strand, within HGI48_RS02500at 540.350 kb on + strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.518 kb on - strand, within HGI48_RS02500at 540.637 kb on + strandat 540.638 kb on - strand, within HGI48_RS02500at 540.638 kb on - strand, within HGI48_RS02500at 540.749 kb on + strandat 540.749 kb on + strandat 540.750 kb on - strandat 540.763 kb on + strandat 540.764 kb on - strandat 540.764 kb on - strandat 540.764 kb on - strandat 540.764 kb on - strandat 540.876 kb on + strandat 540.877 kb on - strandat 540.877 kb on - strandat 540.877 kb on - strandat 540.877 kb on - strandat 541.076 kb on + strand, within HGI48_RS02505at 541.114 kb on + strand, within HGI48_RS02505at 541.176 kb on + strand, within HGI48_RS02505at 541.176 kb on + strand, within HGI48_RS02505at 541.234 kb on + strand, within HGI48_RS02505at 541.234 kb on + strand, within HGI48_RS02505at 541.234 kb on + strand, within HGI48_RS02505at 541.235 kb on - strand, within HGI48_RS02505at 541.276 kb on + strand, within HGI48_RS02505at 541.346 kb on + strand, within HGI48_RS02505at 541.346 kb on + strand, within HGI48_RS02505at 541.347 kb on - strand, within HGI48_RS02505at 541.385 kb on + strand, within HGI48_RS02505at 541.505 kb on + strand, within HGI48_RS02505at 541.505 kb on + strand, within HGI48_RS02505at 541.506 kb on - strand, within HGI48_RS02505at 541.506 kb on - strandat 541.506 kb on - strandat 541.506 kb on - strand, within HGI48_RS02505at 541.580 kb on + strand, within HGI48_RS02505at 541.581 kb on - strand, within HGI48_RS02505at 541.597 kb on + strand, within HGI48_RS02505at 541.598 kb on - strand, within HGI48_RS02505at 541.598 kb on - strand, within HGI48_RS02505at 541.617 kb on + strand, within HGI48_RS02505at 541.617 kb on + strandat 541.617 kb on + strand, within HGI48_RS02505at 541.618 kb on - strand, within HGI48_RS02505at 541.729 kb on + strand, within HGI48_RS02505at 541.730 kb on - strand, within HGI48_RS02505

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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538,862 + HGI48_RS02495 0.18 +0.1
538,862 + HGI48_RS02495 0.18 -0.7
538,863 - HGI48_RS02495 0.18 -1.5
538,863 - HGI48_RS02495 0.18 +0.9
539,040 + HGI48_RS02495 0.35 -0.7
539,198 - HGI48_RS02495 0.50 +0.3
539,226 - HGI48_RS02495 0.53 -1.5
539,301 + HGI48_RS02495 0.60 -2.3
539,301 + HGI48_RS02495 0.60 +0.4
539,302 - HGI48_RS02495 0.60 +0.5
539,302 - HGI48_RS02495 0.60 -0.1
539,396 + HGI48_RS02495 0.69 -0.3
539,688 + +0.7
539,770 + -1.7
539,770 + +2.5
539,838 + HGI48_RS02500 0.11 -0.4
539,838 + HGI48_RS02500 0.11 -1.9
539,839 - HGI48_RS02500 0.11 -0.3
539,839 - HGI48_RS02500 0.11 -0.1
539,913 + HGI48_RS02500 0.18 +0.3
539,972 + HGI48_RS02500 0.24 -1.4
539,973 - HGI48_RS02500 0.24 -0.2
539,973 - HGI48_RS02500 0.24 +0.6
539,973 - -0.7
540,021 - HGI48_RS02500 0.29 +0.9
540,024 + HGI48_RS02500 0.29 +0.2
540,024 + +0.9
540,024 + -0.7
540,024 + HGI48_RS02500 0.29 +1.6
540,024 + HGI48_RS02500 0.29 -0.6
540,025 - +0.9
540,025 - HGI48_RS02500 0.29 -0.0
540,059 - HGI48_RS02500 0.32 +0.7
540,083 - HGI48_RS02500 0.35 +0.1
540,083 - HGI48_RS02500 0.35 +0.0
540,194 + HGI48_RS02500 0.45 +0.3
540,194 + HGI48_RS02500 0.45 +0.3
540,194 + HGI48_RS02500 0.45 +0.3
540,194 + HGI48_RS02500 0.45 -0.1
540,195 - HGI48_RS02500 0.46 +0.7
540,195 - HGI48_RS02500 0.46 -0.1
540,350 + HGI48_RS02500 0.61 -1.1
540,350 + HGI48_RS02500 0.61 +0.4
540,351 - HGI48_RS02500 0.61 -0.7
540,351 - HGI48_RS02500 0.61 -0.9
540,351 - HGI48_RS02500 0.61 -2.4
540,351 - HGI48_RS02500 0.61 +1.2
540,518 - HGI48_RS02500 0.77 +0.5
540,637 + -0.7
540,638 - HGI48_RS02500 0.89 +1.3
540,638 - HGI48_RS02500 0.89 +0.9
540,749 + +1.2
540,749 + -1.0
540,750 - -0.3
540,763 + -1.7
540,764 - -0.3
540,764 - +0.9
540,764 - -0.4
540,764 - -0.8
540,876 + +2.2
540,877 - -0.1
540,877 - +0.9
540,877 - -2.1
540,877 - +1.9
541,076 + HGI48_RS02505 0.19 -0.5
541,114 + HGI48_RS02505 0.22 -0.1
541,176 + HGI48_RS02505 0.27 -0.6
541,176 + HGI48_RS02505 0.27 -1.0
541,234 + HGI48_RS02505 0.32 -1.7
541,234 + HGI48_RS02505 0.32 -0.9
541,234 + HGI48_RS02505 0.32 -0.6
541,235 - HGI48_RS02505 0.32 +0.2
541,276 + HGI48_RS02505 0.36 -1.1
541,346 + HGI48_RS02505 0.42 -2.3
541,346 + HGI48_RS02505 0.42 +0.3
541,347 - HGI48_RS02505 0.42 -1.8
541,385 + HGI48_RS02505 0.45 -1.3
541,505 + HGI48_RS02505 0.56 +1.7
541,505 + HGI48_RS02505 0.56 -1.1
541,506 - HGI48_RS02505 0.56 -1.8
541,506 - +0.3
541,506 - -0.7
541,506 - HGI48_RS02505 0.56 -0.1
541,580 + HGI48_RS02505 0.62 -0.7
541,581 - HGI48_RS02505 0.62 -0.9
541,597 + HGI48_RS02505 0.64 -1.8
541,598 - HGI48_RS02505 0.64 -0.1
541,598 - HGI48_RS02505 0.64 -0.4
541,617 + HGI48_RS02505 0.66 +1.9
541,617 + +1.3
541,617 + HGI48_RS02505 0.66 +1.5
541,618 - HGI48_RS02505 0.66 -1.5
541,729 + HGI48_RS02505 0.75 -1.4
541,730 - HGI48_RS02505 0.75 -0.7

Or see this region's nucleotide sequence