Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02490 and HGI48_RS02495 are separated by 138 nucleotides HGI48_RS02495 and HGI48_RS02500 are separated by 17 nucleotides
HGI48_RS02490: HGI48_RS02490 - LysR family transcriptional regulator, at 537,600 to 538,538
_RS02490
HGI48_RS02495: HGI48_RS02495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 538,677 to 539,711
_RS02495
HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751
_RS02500
Position (kb) 538
539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.678 kb on + strand at 537.678 kb on + strand at 537.794 kb on + strand, within HGI48_RS02490 at 537.794 kb on + strand, within HGI48_RS02490 at 537.796 kb on + strand, within HGI48_RS02490 at 537.900 kb on - strand, within HGI48_RS02490 at 537.910 kb on + strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.140 kb on - strand, within HGI48_RS02490 at 538.158 kb on - strand, within HGI48_RS02490 at 538.213 kb on - strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.310 kb on - strand, within HGI48_RS02490 at 538.340 kb on - strand, within HGI48_RS02490 at 538.340 kb on - strand at 538.552 kb on - strand at 538.587 kb on - strand at 538.587 kb on - strand at 538.617 kb on + strand at 538.617 kb on + strand at 538.618 kb on - strand at 538.618 kb on - strand at 538.618 kb on - strand at 538.643 kb on + strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.862 kb on + strand, within HGI48_RS02495 at 538.862 kb on + strand, within HGI48_RS02495 at 538.863 kb on - strand, within HGI48_RS02495 at 538.863 kb on - strand, within HGI48_RS02495 at 539.040 kb on + strand, within HGI48_RS02495 at 539.198 kb on - strand, within HGI48_RS02495 at 539.226 kb on - strand, within HGI48_RS02495 at 539.301 kb on + strand, within HGI48_RS02495 at 539.301 kb on + strand, within HGI48_RS02495 at 539.302 kb on - strand, within HGI48_RS02495 at 539.302 kb on - strand, within HGI48_RS02495 at 539.396 kb on + strand, within HGI48_RS02495 at 539.688 kb on + strand at 539.770 kb on + strand at 539.770 kb on + strand at 539.838 kb on + strand, within HGI48_RS02500 at 539.838 kb on + strand, within HGI48_RS02500 at 539.839 kb on - strand, within HGI48_RS02500 at 539.839 kb on - strand, within HGI48_RS02500 at 539.913 kb on + strand, within HGI48_RS02500 at 539.972 kb on + strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand at 540.021 kb on - strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand at 540.024 kb on + strand at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.025 kb on - strand at 540.025 kb on - strand, within HGI48_RS02500 at 540.059 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.518 kb on - strand, within HGI48_RS02500 at 540.637 kb on + strand at 540.638 kb on - strand, within HGI48_RS02500 at 540.638 kb on - strand, within HGI48_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 537,678 + -0.1 537,678 + +0.7 537,794 + HGI48_RS02490 0.21 -0.1 537,794 + HGI48_RS02490 0.21 -0.4 537,796 + HGI48_RS02490 0.21 -2.5 537,900 - HGI48_RS02490 0.32 -0.3 537,910 + HGI48_RS02490 0.33 +0.2 537,911 - HGI48_RS02490 0.33 -0.8 537,911 - HGI48_RS02490 0.33 -0.6 537,911 - HGI48_RS02490 0.33 +0.3 538,139 + HGI48_RS02490 0.57 +0.6 538,139 + HGI48_RS02490 0.57 -0.7 538,139 + HGI48_RS02490 0.57 -0.3 538,139 + HGI48_RS02490 0.57 -0.8 538,139 + HGI48_RS02490 0.57 -0.9 538,139 + HGI48_RS02490 0.57 +0.8 538,139 + HGI48_RS02490 0.57 -1.3 538,140 - HGI48_RS02490 0.58 +0.9 538,158 - HGI48_RS02490 0.59 +1.3 538,213 - HGI48_RS02490 0.65 -1.7 538,309 + HGI48_RS02490 0.76 -0.7 538,309 + HGI48_RS02490 0.76 -1.8 538,309 + HGI48_RS02490 0.76 -0.7 538,310 - HGI48_RS02490 0.76 -0.8 538,340 - HGI48_RS02490 0.79 +0.9 538,340 - -0.7 538,552 - -0.2 538,587 - +1.1 538,587 - +1.5 538,617 + +0.6 538,617 + -1.4 538,618 - -0.5 538,618 - -1.4 538,618 - -0.7 538,643 + +0.5 538,646 - -0.1 538,646 - -1.1 538,646 - -0.7 538,646 - -1.9 538,646 - -0.5 538,862 + HGI48_RS02495 0.18 +0.1 538,862 + HGI48_RS02495 0.18 -0.7 538,863 - HGI48_RS02495 0.18 -1.5 538,863 - HGI48_RS02495 0.18 +0.9 539,040 + HGI48_RS02495 0.35 -0.7 539,198 - HGI48_RS02495 0.50 +0.3 539,226 - HGI48_RS02495 0.53 -1.5 539,301 + HGI48_RS02495 0.60 -2.3 539,301 + HGI48_RS02495 0.60 +0.4 539,302 - HGI48_RS02495 0.60 +0.5 539,302 - HGI48_RS02495 0.60 -0.1 539,396 + HGI48_RS02495 0.69 -0.3 539,688 + +0.7 539,770 + -1.7 539,770 + +2.5 539,838 + HGI48_RS02500 0.11 -0.4 539,838 + HGI48_RS02500 0.11 -1.9 539,839 - HGI48_RS02500 0.11 -0.3 539,839 - HGI48_RS02500 0.11 -0.1 539,913 + HGI48_RS02500 0.18 +0.3 539,972 + HGI48_RS02500 0.24 -1.4 539,973 - HGI48_RS02500 0.24 -0.2 539,973 - HGI48_RS02500 0.24 +0.6 539,973 - -0.7 540,021 - HGI48_RS02500 0.29 +0.9 540,024 + HGI48_RS02500 0.29 +0.2 540,024 + +0.9 540,024 + -0.7 540,024 + HGI48_RS02500 0.29 +1.6 540,024 + HGI48_RS02500 0.29 -0.6 540,025 - +0.9 540,025 - HGI48_RS02500 0.29 -0.0 540,059 - HGI48_RS02500 0.32 +0.7 540,083 - HGI48_RS02500 0.35 +0.1 540,083 - HGI48_RS02500 0.35 +0.0 540,194 + HGI48_RS02500 0.45 +0.3 540,194 + HGI48_RS02500 0.45 +0.3 540,194 + HGI48_RS02500 0.45 +0.3 540,194 + HGI48_RS02500 0.45 -0.1 540,195 - HGI48_RS02500 0.46 +0.7 540,195 - HGI48_RS02500 0.46 -0.1 540,350 + HGI48_RS02500 0.61 -1.1 540,350 + HGI48_RS02500 0.61 +0.4 540,351 - HGI48_RS02500 0.61 -0.7 540,351 - HGI48_RS02500 0.61 -0.9 540,351 - HGI48_RS02500 0.61 -2.4 540,351 - HGI48_RS02500 0.61 +1.2 540,518 - HGI48_RS02500 0.77 +0.5 540,637 + -0.7 540,638 - HGI48_RS02500 0.89 +1.3 540,638 - HGI48_RS02500 0.89 +0.9
Or see this region's nucleotide sequence