Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02470 and HGI48_RS02475 are separated by 230 nucleotides HGI48_RS02475 and HGI48_RS02480 overlap by 16 nucleotides HGI48_RS02480 and HGI48_RS02485 overlap by 4 nucleotides
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
HGI48_RS02475: HGI48_RS02475 - acetyltransferase, at 535,803 to 536,483
_RS02475
HGI48_RS02480: HGI48_RS02480 - hydroxyisourate hydrolase, at 536,468 to 536,800
_RS02480
HGI48_RS02485: HGI48_RS02485 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 536,797 to 537,297
_RS02485
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.899 kb on + strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.939 kb on - strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.963 kb on - strand, within HGI48_RS02470 at 534.966 kb on + strand at 534.967 kb on - strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand at 535.181 kb on - strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand at 535.220 kb on - strand, within HGI48_RS02470 at 535.266 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.608 kb on + strand at 535.608 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.629 kb on - strand at 535.641 kb on + strand at 535.642 kb on - strand at 535.646 kb on + strand at 535.667 kb on + strand at 535.692 kb on + strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.703 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.802 kb on + strand at 535.802 kb on + strand at 535.861 kb on + strand at 535.861 kb on + strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.874 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.086 kb on - strand, within HGI48_RS02475 at 536.430 kb on + strand at 536.430 kb on + strand at 536.430 kb on + strand at 536.431 kb on - strand at 536.486 kb on - strand at 536.486 kb on - strand at 536.523 kb on + strand, within HGI48_RS02480 at 536.523 kb on + strand, within HGI48_RS02480 at 536.524 kb on - strand at 536.568 kb on + strand, within HGI48_RS02480 at 536.568 kb on + strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.788 kb on + strand at 536.789 kb on - strand at 536.789 kb on - strand at 536.794 kb on + strand at 536.795 kb on - strand at 536.795 kb on - strand at 536.832 kb on + strand at 537.012 kb on + strand, within HGI48_RS02485 at 537.152 kb on - strand, within HGI48_RS02485 at 537.276 kb on + strand at 537.277 kb on - strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.330 kb on - strand at 537.364 kb on + strand at 537.389 kb on + strand at 537.401 kb on + strand at 537.404 kb on - strand at 537.433 kb on - strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.482 kb on - strand at 537.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 534,899 + HGI48_RS02470 0.19 -0.4 534,900 - HGI48_RS02470 0.19 -1.0 534,900 - HGI48_RS02470 0.19 +0.2 534,900 - HGI48_RS02470 0.19 -0.2 534,939 - HGI48_RS02470 0.24 +0.2 534,962 + HGI48_RS02470 0.26 -0.2 534,962 + HGI48_RS02470 0.26 -0.2 534,962 + HGI48_RS02470 0.26 +1.1 534,962 + HGI48_RS02470 0.26 +0.2 534,962 + HGI48_RS02470 0.26 +0.1 534,962 + HGI48_RS02470 0.26 -0.3 534,962 + HGI48_RS02470 0.26 -0.1 534,962 + HGI48_RS02470 0.26 -0.9 534,963 - HGI48_RS02470 0.27 +0.0 534,966 + -0.7 534,967 - HGI48_RS02470 0.27 -0.9 535,180 + HGI48_RS02470 0.53 -1.4 535,180 + HGI48_RS02470 0.53 +0.0 535,180 + HGI48_RS02470 0.53 +0.5 535,181 - HGI48_RS02470 0.53 +0.2 535,181 - HGI48_RS02470 0.53 -0.4 535,181 - HGI48_RS02470 0.53 -0.5 535,181 - HGI48_RS02470 0.53 +0.9 535,181 - +0.9 535,181 - HGI48_RS02470 0.53 -0.3 535,182 + HGI48_RS02470 0.53 -0.3 535,182 + HGI48_RS02470 0.53 -0.9 535,182 + HGI48_RS02470 0.53 -0.0 535,182 + +0.9 535,220 - HGI48_RS02470 0.58 +0.4 535,266 - HGI48_RS02470 0.63 -0.1 535,336 - HGI48_RS02470 0.71 +1.1 535,336 - HGI48_RS02470 0.71 -1.4 535,377 + HGI48_RS02470 0.76 +1.0 535,377 + HGI48_RS02470 0.76 -0.9 535,378 - HGI48_RS02470 0.77 +0.9 535,378 - HGI48_RS02470 0.77 -0.2 535,378 - +0.3 535,378 - HGI48_RS02470 0.77 +1.3 535,378 - HGI48_RS02470 0.77 -0.5 535,378 - HGI48_RS02470 0.77 -0.3 535,378 - HGI48_RS02470 0.77 -0.1 535,378 - HGI48_RS02470 0.77 +0.6 535,518 + -1.4 535,518 + -0.7 535,518 + -0.0 535,518 + +1.8 535,519 - +0.6 535,519 - +0.9 535,519 - -1.9 535,523 + -1.0 535,523 + +0.1 535,562 - -1.9 535,590 + -0.1 535,590 + -1.0 535,590 + -0.1 535,591 - -0.4 535,591 - +0.3 535,591 - -0.5 535,597 + +1.1 535,597 + +0.5 535,598 - +0.2 535,598 - +0.7 535,600 + -0.1 535,600 + -0.2 535,600 + +0.4 535,600 + -0.3 535,600 + -0.1 535,600 + +0.9 535,600 + +0.3 535,600 + +0.2 535,601 - -0.7 535,601 - +0.0 535,601 - +0.7 535,601 - -0.1 535,601 - -1.1 535,608 + +0.4 535,608 + +0.1 535,617 + -0.1 535,617 + -2.9 535,617 + -0.5 535,617 + +0.3 535,617 + +1.2 535,618 - -0.7 535,618 - +0.2 535,618 - -0.4 535,625 - -1.4 535,625 - -0.7 535,625 - -0.1 535,625 - -0.7 535,629 - -0.7 535,641 + -0.1 535,642 - -1.4 535,646 + -0.7 535,667 + -0.5 535,692 + -0.4 535,693 - +0.3 535,693 - +0.3 535,693 - -1.1 535,693 - +1.1 535,693 - -0.6 535,703 + -0.4 535,758 + -0.3 535,758 + +0.3 535,758 + +0.1 535,759 - -0.2 535,759 - -1.3 535,759 - +1.1 535,759 - -0.4 535,802 + -1.4 535,802 + -1.0 535,861 + +0.9 535,861 + +0.9 535,862 - -0.3 535,862 - +0.2 535,862 - +0.1 535,862 - +0.9 535,862 - -0.1 535,862 - -1.0 535,862 - -1.3 535,874 + HGI48_RS02475 0.10 -0.7 535,910 + HGI48_RS02475 0.16 -0.9 535,910 + HGI48_RS02475 0.16 +0.3 535,911 - HGI48_RS02475 0.16 -0.5 535,911 - HGI48_RS02475 0.16 -0.1 535,941 + HGI48_RS02475 0.20 -0.7 535,941 + HGI48_RS02475 0.20 +0.3 535,942 - HGI48_RS02475 0.20 +0.9 535,942 - HGI48_RS02475 0.20 +0.2 535,942 - HGI48_RS02475 0.20 +0.4 535,942 - HGI48_RS02475 0.20 -1.4 535,942 - HGI48_RS02475 0.20 -0.1 535,947 + HGI48_RS02475 0.21 -1.9 535,947 + HGI48_RS02475 0.21 -1.0 535,947 + HGI48_RS02475 0.21 -0.4 535,947 + +2.5 535,947 + HGI48_RS02475 0.21 -0.9 535,947 + HGI48_RS02475 0.21 +0.9 535,947 + HGI48_RS02475 0.21 +0.4 535,947 + HGI48_RS02475 0.21 +0.1 535,947 + HGI48_RS02475 0.21 -0.2 535,947 + HGI48_RS02475 0.21 +0.9 535,948 - HGI48_RS02475 0.21 -0.1 535,948 - HGI48_RS02475 0.21 +0.8 535,948 - HGI48_RS02475 0.21 -1.1 535,948 - HGI48_RS02475 0.21 -0.1 535,948 - HGI48_RS02475 0.21 +0.7 535,948 - HGI48_RS02475 0.21 -2.3 536,085 + HGI48_RS02475 0.41 +0.1 536,085 + HGI48_RS02475 0.41 +0.9 536,086 - HGI48_RS02475 0.42 +0.6 536,430 + +0.3 536,430 + +0.9 536,430 + +0.0 536,431 - -0.4 536,486 - +0.2 536,486 - -2.3 536,523 + HGI48_RS02480 0.17 -0.1 536,523 + HGI48_RS02480 0.17 -0.2 536,524 - +0.3 536,568 + HGI48_RS02480 0.30 -0.8 536,568 + HGI48_RS02480 0.30 -0.8 536,569 - HGI48_RS02480 0.30 -0.5 536,569 - HGI48_RS02480 0.30 +1.2 536,788 + +0.9 536,789 - -1.7 536,789 - -0.4 536,794 + +0.7 536,795 - +0.1 536,795 - -0.4 536,832 + -0.2 537,012 + HGI48_RS02485 0.43 -0.1 537,152 - HGI48_RS02485 0.71 +0.9 537,276 + -1.1 537,277 - -0.4 537,286 + +0.9 537,286 + +1.3 537,286 + -0.7 537,287 - +0.5 537,287 - -0.1 537,287 - +0.1 537,287 - -1.1 537,329 + -0.1 537,329 + +0.1 537,329 + +1.2 537,330 - +0.9 537,364 + +1.3 537,389 + -0.3 537,401 + -0.4 537,404 - -0.6 537,433 - +0.9 537,444 + +0.2 537,444 + -1.4 537,444 + -1.0 537,444 + -0.4 537,444 + -0.2 537,444 + -1.2 537,445 - -0.1 537,445 - +1.1 537,445 - -0.2 537,445 - -0.1 537,445 - -1.1 537,445 - +0.9 537,445 - +0.0 537,482 - -0.4 537,482 - -2.8
Or see this region's nucleotide sequence