Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02450

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02440 and HGI48_RS02445 are separated by 261 nucleotidesHGI48_RS02445 and HGI48_RS02450 are separated by 16 nucleotidesHGI48_RS02450 and HGI48_RS02455 overlap by 4 nucleotides HGI48_RS02440: HGI48_RS02440 - hypothetical protein, at 529,269 to 529,511 _RS02440 HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309 _RS02445 HGI48_RS02450: HGI48_RS02450 - ABC transporter substrate-binding protein, at 530,326 to 531,267 _RS02450 HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262 _RS02455 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 529.525 kb on + strandat 529.525 kb on + strandat 529.525 kb on + strandat 529.526 kb on - strandat 529.526 kb on - strandat 529.526 kb on - strandat 529.537 kb on + strandat 529.538 kb on - strandat 529.538 kb on - strandat 529.538 kb on - strandat 529.550 kb on - strandat 529.550 kb on - strandat 529.638 kb on + strandat 529.638 kb on + strandat 529.638 kb on + strandat 529.639 kb on - strandat 529.639 kb on - strandat 529.639 kb on - strandat 529.639 kb on - strandat 529.710 kb on + strandat 529.711 kb on - strandat 529.711 kb on - strandat 529.711 kb on - strandat 529.711 kb on - strandat 529.711 kb on - strandat 529.714 kb on + strandat 529.715 kb on - strandat 529.804 kb on + strandat 529.813 kb on + strandat 529.813 kb on + strandat 529.813 kb on + strandat 529.813 kb on + strandat 529.814 kb on - strandat 529.814 kb on - strandat 529.814 kb on - strandat 529.831 kb on + strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.832 kb on - strand, within HGI48_RS02445at 529.840 kb on + strandat 529.841 kb on - strand, within HGI48_RS02445at 529.849 kb on + strandat 529.849 kb on + strandat 529.849 kb on + strand, within HGI48_RS02445at 529.849 kb on + strand, within HGI48_RS02445at 529.849 kb on + strand, within HGI48_RS02445at 529.849 kb on + strandat 529.849 kb on + strand, within HGI48_RS02445at 529.850 kb on - strand, within HGI48_RS02445at 529.850 kb on - strand, within HGI48_RS02445at 529.850 kb on - strand, within HGI48_RS02445at 529.850 kb on - strand, within HGI48_RS02445at 529.858 kb on + strandat 529.867 kb on + strand, within HGI48_RS02445at 529.867 kb on + strand, within HGI48_RS02445at 529.867 kb on + strand, within HGI48_RS02445at 529.868 kb on - strand, within HGI48_RS02445at 529.868 kb on - strand, within HGI48_RS02445at 529.876 kb on + strand, within HGI48_RS02445at 529.991 kb on + strand, within HGI48_RS02445at 529.992 kb on - strand, within HGI48_RS02445at 529.992 kb on - strand, within HGI48_RS02445at 530.051 kb on - strand, within HGI48_RS02445at 530.054 kb on - strandat 530.054 kb on - strand, within HGI48_RS02445at 530.054 kb on - strand, within HGI48_RS02445at 530.054 kb on - strand, within HGI48_RS02445at 530.054 kb on - strand, within HGI48_RS02445at 530.054 kb on - strand, within HGI48_RS02445at 530.189 kb on + strand, within HGI48_RS02445at 530.260 kb on + strandat 530.274 kb on + strandat 530.274 kb on + strandat 530.282 kb on + strandat 530.282 kb on + strandat 530.283 kb on - strandat 530.283 kb on - strandat 530.283 kb on - strandat 530.387 kb on + strandat 530.585 kb on - strand, within HGI48_RS02450at 530.585 kb on - strand, within HGI48_RS02450at 530.585 kb on - strandat 530.645 kb on - strandat 530.693 kb on - strand, within HGI48_RS02450at 530.693 kb on - strand, within HGI48_RS02450at 530.727 kb on + strand, within HGI48_RS02450at 530.727 kb on + strand, within HGI48_RS02450at 530.727 kb on + strand, within HGI48_RS02450at 530.728 kb on - strandat 530.728 kb on - strand, within HGI48_RS02450at 530.768 kb on + strand, within HGI48_RS02450at 530.768 kb on + strandat 530.768 kb on + strand, within HGI48_RS02450at 530.769 kb on - strand, within HGI48_RS02450at 530.769 kb on - strand, within HGI48_RS02450at 530.769 kb on - strand, within HGI48_RS02450at 530.769 kb on - strand, within HGI48_RS02450at 530.901 kb on - strand, within HGI48_RS02450at 530.901 kb on - strand, within HGI48_RS02450at 530.901 kb on - strand, within HGI48_RS02450at 530.908 kb on + strand, within HGI48_RS02450at 530.925 kb on + strand, within HGI48_RS02450at 530.925 kb on + strand, within HGI48_RS02450at 530.947 kb on + strand, within HGI48_RS02450at 530.948 kb on - strand, within HGI48_RS02450at 531.079 kb on + strand, within HGI48_RS02450at 531.080 kb on - strand, within HGI48_RS02450at 531.184 kb on + strandat 531.282 kb on + strandat 531.282 kb on + strandat 531.283 kb on - strandat 531.283 kb on - strandat 531.283 kb on - strandat 531.283 kb on - strandat 531.304 kb on + strandat 531.305 kb on - strandat 531.305 kb on - strandat 531.738 kb on - strand, within HGI48_RS02455at 531.738 kb on - strand, within HGI48_RS02455at 531.738 kb on - strandat 531.768 kb on + strand, within HGI48_RS02455at 531.768 kb on + strand, within HGI48_RS02455at 531.768 kb on + strand, within HGI48_RS02455at 531.769 kb on - strand, within HGI48_RS02455at 531.769 kb on - strand, within HGI48_RS02455at 532.260 kb on + strandat 532.260 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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529,525 + -0.1
529,525 + +1.7
529,525 + -0.9
529,526 - -1.1
529,526 - +1.2
529,526 - -0.3
529,537 + +1.5
529,538 - -0.3
529,538 - +0.6
529,538 - -0.1
529,550 - -1.9
529,550 - +0.4
529,638 + -0.2
529,638 + -1.7
529,638 + -0.7
529,639 - -0.3
529,639 - +0.3
529,639 - -0.3
529,639 - +0.5
529,710 + -0.3
529,711 - -1.8
529,711 - -0.9
529,711 - +0.6
529,711 - +0.4
529,711 - -1.1
529,714 + +1.9
529,715 - +0.3
529,804 + +0.9
529,813 + +1.9
529,813 + -0.9
529,813 + -0.9
529,813 + -1.4
529,814 - -1.9
529,814 - -0.3
529,814 - -0.4
529,831 + HGI48_RS02445 0.11 -0.4
529,832 - HGI48_RS02445 0.11 +0.4
529,832 - HGI48_RS02445 0.11 -1.1
529,832 - HGI48_RS02445 0.11 -1.1
529,832 - HGI48_RS02445 0.11 -0.4
529,832 - HGI48_RS02445 0.11 +0.7
529,832 - HGI48_RS02445 0.11 -0.4
529,832 - HGI48_RS02445 0.11 -0.1
529,832 - HGI48_RS02445 0.11 -0.3
529,832 - HGI48_RS02445 0.11 -0.4
529,840 + +0.3
529,841 - HGI48_RS02445 0.13 -0.3
529,849 + +1.7
529,849 + +0.9
529,849 + HGI48_RS02445 0.14 -0.1
529,849 + HGI48_RS02445 0.14 -0.3
529,849 + HGI48_RS02445 0.14 -0.7
529,849 + -0.1
529,849 + HGI48_RS02445 0.14 -2.0
529,850 - HGI48_RS02445 0.14 -0.1
529,850 - HGI48_RS02445 0.14 -1.4
529,850 - HGI48_RS02445 0.14 +1.1
529,850 - HGI48_RS02445 0.14 -0.1
529,858 + +2.2
529,867 + HGI48_RS02445 0.18 -1.3
529,867 + HGI48_RS02445 0.18 +0.8
529,867 + HGI48_RS02445 0.18 +1.1
529,868 - HGI48_RS02445 0.18 -1.1
529,868 - HGI48_RS02445 0.18 +1.2
529,876 + HGI48_RS02445 0.19 -0.4
529,991 + HGI48_RS02445 0.41 +1.2
529,992 - HGI48_RS02445 0.41 -0.7
529,992 - HGI48_RS02445 0.41 +1.1
530,051 - HGI48_RS02445 0.52 +0.6
530,054 - +3.2
530,054 - HGI48_RS02445 0.52 +0.1
530,054 - HGI48_RS02445 0.52 -1.4
530,054 - HGI48_RS02445 0.52 -1.1
530,054 - HGI48_RS02445 0.52 -0.3
530,054 - HGI48_RS02445 0.52 -0.4
530,189 + HGI48_RS02445 0.77 -1.4
530,260 + -0.3
530,274 + -0.3
530,274 + +0.2
530,282 + +2.1
530,282 + +0.5
530,283 - -0.7
530,283 - +1.5
530,283 - -1.1
530,387 + -0.7
530,585 - HGI48_RS02450 0.27 -2.3
530,585 - HGI48_RS02450 0.27 -0.9
530,585 - +0.9
530,645 - +1.9
530,693 - HGI48_RS02450 0.39 -1.4
530,693 - HGI48_RS02450 0.39 -1.1
530,727 + HGI48_RS02450 0.43 -0.1
530,727 + HGI48_RS02450 0.43 +0.0
530,727 + HGI48_RS02450 0.43 -0.2
530,728 - +1.3
530,728 - HGI48_RS02450 0.43 -0.3
530,768 + HGI48_RS02450 0.47 -0.4
530,768 + -0.1
530,768 + HGI48_RS02450 0.47 -0.1
530,769 - HGI48_RS02450 0.47 -0.4
530,769 - HGI48_RS02450 0.47 -0.5
530,769 - HGI48_RS02450 0.47 -1.9
530,769 - HGI48_RS02450 0.47 +0.9
530,901 - HGI48_RS02450 0.61 -0.1
530,901 - HGI48_RS02450 0.61 -0.6
530,901 - HGI48_RS02450 0.61 -0.1
530,908 + HGI48_RS02450 0.62 -0.4
530,925 + HGI48_RS02450 0.64 -1.4
530,925 + HGI48_RS02450 0.64 -0.4
530,947 + HGI48_RS02450 0.66 -0.5
530,948 - HGI48_RS02450 0.66 +0.1
531,079 + HGI48_RS02450 0.80 -0.7
531,080 - HGI48_RS02450 0.80 -1.4
531,184 + +0.9
531,282 + -2.0
531,282 + -0.9
531,283 - -0.5
531,283 - -0.3
531,283 - +1.3
531,283 - -0.3
531,304 + -1.4
531,305 - -0.9
531,305 - +1.4
531,738 - HGI48_RS02455 0.47 -0.5
531,738 - HGI48_RS02455 0.47 -2.1
531,738 - +1.3
531,768 + HGI48_RS02455 0.50 -0.1
531,768 + HGI48_RS02455 0.50 +0.7
531,768 + HGI48_RS02455 0.50 +0.5
531,769 - HGI48_RS02455 0.51 -0.1
531,769 - HGI48_RS02455 0.51 -0.3
532,260 + +0.3
532,260 + +0.3

Or see this region's nucleotide sequence