Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02405 and HGI48_RS02410 are separated by 130 nucleotides HGI48_RS02410 and HGI48_RS02415 are separated by 39 nucleotides
HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540
_RS02405
HGI48_RS02410: HGI48_RS02410 - stress-response protein, at 522,671 to 522,859
_RS02410
HGI48_RS02415: HGI48_RS02415 - TatD family hydrolase, at 522,899 to 523,738
_RS02415
Position (kb) 522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.725 kb on + strand at 521.725 kb on + strand at 521.726 kb on - strand at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.784 kb on - strand at 521.802 kb on + strand at 521.814 kb on + strand at 521.814 kb on + strand at 521.815 kb on - strand at 521.815 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.897 kb on + strand at 521.897 kb on + strand at 521.922 kb on - strand at 521.932 kb on - strand at 521.932 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.957 kb on + strand at 521.958 kb on - strand at 521.968 kb on - strand, within HGI48_RS02405 at 522.031 kb on - strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.105 kb on + strand at 522.279 kb on + strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.297 kb on + strand at 522.298 kb on - strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.363 kb on + strand, within HGI48_RS02405 at 522.364 kb on - strand at 522.364 kb on - strand, within HGI48_RS02405 at 522.368 kb on + strand, within HGI48_RS02405 at 522.368 kb on + strand at 522.402 kb on + strand, within HGI48_RS02405 at 522.403 kb on - strand at 522.403 kb on - strand, within HGI48_RS02405 at 522.407 kb on + strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.505 kb on - strand at 522.505 kb on - strand at 522.577 kb on - strand at 522.594 kb on - strand at 522.594 kb on - strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.799 kb on - strand, within HGI48_RS02410 at 522.799 kb on - strand, within HGI48_RS02410 at 522.806 kb on + strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.831 kb on + strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.885 kb on + strand at 522.886 kb on - strand at 522.886 kb on - strand at 522.886 kb on - strand at 523.065 kb on - strand, within HGI48_RS02415 at 523.109 kb on + strand at 523.109 kb on + strand, within HGI48_RS02415 at 523.110 kb on - strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.139 kb on - strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.340 kb on - strand, within HGI48_RS02415 at 523.363 kb on - strand, within HGI48_RS02415 at 523.418 kb on + strand, within HGI48_RS02415 at 523.419 kb on - strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.452 kb on - strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.477 kb on + strand, within HGI48_RS02415 at 523.478 kb on - strand, within HGI48_RS02415 at 523.478 kb on - strand at 523.478 kb on - strand, within HGI48_RS02415 at 523.482 kb on - strand, within HGI48_RS02415 at 523.571 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.609 kb on + strand at 523.609 kb on + strand, within HGI48_RS02415 at 523.609 kb on + strand, within HGI48_RS02415 at 523.610 kb on - strand, within HGI48_RS02415 at 523.752 kb on + strand at 523.766 kb on + strand at 523.767 kb on - strand at 523.767 kb on - strand at 523.767 kb on - strand at 523.769 kb on + strand at 523.769 kb on + strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.780 kb on - strand at 523.787 kb on + strand at 523.787 kb on + strand at 523.787 kb on + strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.796 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 521,721 + +0.1 521,721 + +0.4 521,721 + -2.7 521,721 + +1.1 521,722 - +0.5 521,722 - +1.3 521,722 - -0.7 521,722 - -1.1 521,725 + -0.9 521,725 + -0.1 521,726 - -0.1 521,753 + +1.7 521,754 - -1.7 521,754 - -0.3 521,783 + +0.9 521,783 + -1.1 521,783 + -0.8 521,783 + -0.5 521,784 - -1.1 521,802 + +0.1 521,814 + -0.7 521,814 + -0.8 521,815 - -0.4 521,815 - +0.2 521,834 - -2.3 521,834 - -0.3 521,882 + +0.3 521,897 + -1.9 521,897 + +0.1 521,922 - -0.3 521,932 - -1.1 521,932 - +0.5 521,936 - -0.5 521,936 - +0.3 521,936 - -0.1 521,936 - -1.1 521,957 + -1.5 521,958 - -1.1 521,968 - HGI48_RS02405 0.10 -0.2 522,031 - HGI48_RS02405 0.20 +0.4 522,085 + HGI48_RS02405 0.29 -0.1 522,085 + HGI48_RS02405 0.29 -0.2 522,085 + HGI48_RS02405 0.29 +0.8 522,085 + HGI48_RS02405 0.29 +0.2 522,085 + HGI48_RS02405 0.29 -0.1 522,086 - HGI48_RS02405 0.29 +1.2 522,086 - HGI48_RS02405 0.29 +1.4 522,086 - +0.3 522,086 - HGI48_RS02405 0.29 -0.3 522,086 - HGI48_RS02405 0.29 -0.7 522,086 - HGI48_RS02405 0.29 -0.4 522,105 + +1.3 522,279 + HGI48_RS02405 0.59 +1.3 522,280 - HGI48_RS02405 0.59 -1.9 522,280 - HGI48_RS02405 0.59 -0.2 522,297 + +0.9 522,298 - HGI48_RS02405 0.62 -1.4 522,325 + HGI48_RS02405 0.66 +0.6 522,325 + HGI48_RS02405 0.66 +0.2 522,325 + HGI48_RS02405 0.66 -0.4 522,325 + HGI48_RS02405 0.66 +0.6 522,325 + +0.3 522,325 + HGI48_RS02405 0.66 -0.5 522,325 + HGI48_RS02405 0.66 -1.7 522,325 + HGI48_RS02405 0.66 -0.9 522,326 - HGI48_RS02405 0.66 +0.5 522,326 - HGI48_RS02405 0.66 -0.1 522,326 - HGI48_RS02405 0.66 +0.9 522,326 - HGI48_RS02405 0.66 +0.1 522,326 - HGI48_RS02405 0.66 +0.9 522,326 - HGI48_RS02405 0.66 +0.5 522,326 - HGI48_RS02405 0.66 +1.2 522,363 + HGI48_RS02405 0.72 +1.7 522,364 - +0.9 522,364 - HGI48_RS02405 0.72 -2.4 522,368 + HGI48_RS02405 0.73 -0.1 522,368 + +0.9 522,402 + HGI48_RS02405 0.78 -0.5 522,403 - +1.3 522,403 - HGI48_RS02405 0.78 +0.4 522,407 + HGI48_RS02405 0.79 -0.7 522,408 - HGI48_RS02405 0.79 -1.4 522,408 - HGI48_RS02405 0.79 -0.4 522,505 - -0.3 522,505 - +0.2 522,577 - -1.1 522,594 - +0.5 522,594 - +1.2 522,604 + -1.1 522,604 + -0.3 522,604 + -1.1 522,604 + -2.4 522,604 + -0.7 522,605 - +0.9 522,605 - +0.5 522,605 - -0.8 522,605 - +0.9 522,605 - -0.3 522,799 - HGI48_RS02410 0.68 +0.5 522,799 - HGI48_RS02410 0.68 -0.5 522,806 + HGI48_RS02410 0.71 +1.1 522,807 - HGI48_RS02410 0.72 -0.7 522,807 - HGI48_RS02410 0.72 -0.7 522,831 + HGI48_RS02410 0.85 -1.1 522,832 - HGI48_RS02410 0.85 +0.1 522,832 - HGI48_RS02410 0.85 -1.7 522,885 + -0.8 522,886 - -0.6 522,886 - -2.3 522,886 - -0.7 523,065 - HGI48_RS02415 0.20 -0.5 523,109 + +0.3 523,109 + HGI48_RS02415 0.25 +0.2 523,110 - HGI48_RS02415 0.25 -1.0 523,136 + HGI48_RS02415 0.28 -1.1 523,136 + HGI48_RS02415 0.28 -1.1 523,136 + HGI48_RS02415 0.28 -0.1 523,136 + HGI48_RS02415 0.28 +1.0 523,136 + HGI48_RS02415 0.28 -0.5 523,137 - HGI48_RS02415 0.28 -0.1 523,137 - HGI48_RS02415 0.28 -0.7 523,139 - +0.3 523,238 + HGI48_RS02415 0.40 +0.9 523,238 + HGI48_RS02415 0.40 +0.2 523,238 + HGI48_RS02415 0.40 +0.1 523,238 + HGI48_RS02415 0.40 -1.4 523,238 + HGI48_RS02415 0.40 -0.1 523,238 + HGI48_RS02415 0.40 +0.1 523,238 + HGI48_RS02415 0.40 -0.4 523,238 + +0.9 523,238 + HGI48_RS02415 0.40 -0.4 523,239 - HGI48_RS02415 0.40 -3.1 523,239 - HGI48_RS02415 0.40 +0.1 523,291 + HGI48_RS02415 0.47 -1.7 523,291 + HGI48_RS02415 0.47 -0.7 523,291 + HGI48_RS02415 0.47 +0.2 523,292 - HGI48_RS02415 0.47 -0.5 523,292 - HGI48_RS02415 0.47 -1.4 523,292 - HGI48_RS02415 0.47 +1.1 523,340 - HGI48_RS02415 0.53 +0.9 523,363 - HGI48_RS02415 0.55 -0.3 523,418 + HGI48_RS02415 0.62 +0.5 523,419 - HGI48_RS02415 0.62 -0.6 523,451 + HGI48_RS02415 0.66 -1.4 523,451 + HGI48_RS02415 0.66 +0.1 523,451 + HGI48_RS02415 0.66 -0.1 523,452 - HGI48_RS02415 0.66 -1.1 523,454 + HGI48_RS02415 0.66 -1.7 523,454 + HGI48_RS02415 0.66 -0.5 523,454 + HGI48_RS02415 0.66 -1.3 523,454 + HGI48_RS02415 0.66 +0.7 523,454 + HGI48_RS02415 0.66 -0.5 523,454 + HGI48_RS02415 0.66 -2.3 523,454 + HGI48_RS02415 0.66 -1.1 523,454 + HGI48_RS02415 0.66 +0.9 523,455 - HGI48_RS02415 0.66 +0.9 523,455 - HGI48_RS02415 0.66 -0.7 523,455 - HGI48_RS02415 0.66 -1.7 523,455 - HGI48_RS02415 0.66 -1.5 523,455 - HGI48_RS02415 0.66 +0.2 523,455 - HGI48_RS02415 0.66 -1.7 523,477 + HGI48_RS02415 0.69 -0.6 523,478 - HGI48_RS02415 0.69 -0.1 523,478 - -0.1 523,478 - HGI48_RS02415 0.69 -0.4 523,482 - HGI48_RS02415 0.69 -0.0 523,571 + HGI48_RS02415 0.80 +1.3 523,606 + HGI48_RS02415 0.84 +0.7 523,606 + HGI48_RS02415 0.84 +0.9 523,606 + +2.7 523,607 - HGI48_RS02415 0.84 +0.4 523,607 - HGI48_RS02415 0.84 -0.6 523,607 - HGI48_RS02415 0.84 -3.2 523,607 - HGI48_RS02415 0.84 -1.4 523,607 - HGI48_RS02415 0.84 -0.9 523,607 - HGI48_RS02415 0.84 -0.5 523,607 - HGI48_RS02415 0.84 -0.6 523,609 + +1.9 523,609 + HGI48_RS02415 0.85 -1.0 523,609 + HGI48_RS02415 0.85 +1.1 523,610 - HGI48_RS02415 0.85 +0.1 523,752 + -0.1 523,766 + +0.9 523,767 - +1.1 523,767 - +0.9 523,767 - +0.2 523,769 + +0.8 523,769 + -1.0 523,770 - +0.5 523,770 - -1.9 523,770 - +1.3 523,770 - +0.3 523,780 - +0.6 523,787 + +0.5 523,787 + -1.3 523,787 + +0.3 523,788 - -1.1 523,788 - -1.1 523,788 - -0.7 523,788 - -0.4 523,796 + -0.4
Or see this region's nucleotide sequence