Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02235 and HGI48_RS02240 are separated by 58 nucleotides HGI48_RS02240 and HGI48_RS02245 are separated by 51 nucleotides HGI48_RS02245 and HGI48_RS02250 are separated by 55 nucleotides HGI48_RS02250 and HGI48_RS02255 overlap by 12 nucleotides HGI48_RS02255 and HGI48_RS02260 are separated by 387 nucleotides
HGI48_RS02235: HGI48_RS02235 - IS481 family transposase, at 487,372 to 488,414
_RS02235
HGI48_RS02240: HGI48_RS02240 - DUF4276 family protein, at 488,473 to 488,619
_RS02240
HGI48_RS02245: HGI48_RS02245 - Lrp/AsnC ligand binding domain-containing protein, at 488,671 to 489,174
_RS02245
HGI48_RS02250: HGI48_RS02250 - hypothetical protein, at 489,230 to 489,367
_RS02250
HGI48_RS02255: HGI48_RS02255 - chorismate mutase, at 489,356 to 489,886
_RS02255
HGI48_RS02260: HGI48_RS02260 - MFS transporter, at 490,274 to 491,506
_RS02260
Position (kb) 489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 488.430 kb on + strand at 488.432 kb on + strand at 488.466 kb on + strand at 488.466 kb on + strand at 488.469 kb on + strand at 488.469 kb on + strand at 488.469 kb on + strand at 488.475 kb on + strand at 488.475 kb on + strand at 488.475 kb on + strand at 488.475 kb on + strand at 488.475 kb on + strand at 488.475 kb on + strand at 488.476 kb on - strand at 488.476 kb on - strand at 488.476 kb on - strand at 488.476 kb on - strand at 488.476 kb on - strand at 488.481 kb on + strand at 488.482 kb on - strand at 488.503 kb on + strand, within HGI48_RS02240 at 488.503 kb on + strand, within HGI48_RS02240 at 488.504 kb on - strand, within HGI48_RS02240 at 488.504 kb on - strand, within HGI48_RS02240 at 488.517 kb on - strand, within HGI48_RS02240 at 488.541 kb on + strand, within HGI48_RS02240 at 488.553 kb on + strand, within HGI48_RS02240 at 488.557 kb on - strand, within HGI48_RS02240 at 488.557 kb on - strand, within HGI48_RS02240 at 488.557 kb on - strand, within HGI48_RS02240 at 488.617 kb on + strand at 488.618 kb on - strand at 488.618 kb on - strand at 488.637 kb on + strand at 488.637 kb on + strand at 488.638 kb on - strand at 488.644 kb on - strand at 488.734 kb on + strand, within HGI48_RS02245 at 488.813 kb on + strand, within HGI48_RS02245 at 488.813 kb on + strand, within HGI48_RS02245 at 488.975 kb on + strand at 488.992 kb on + strand, within HGI48_RS02245 at 488.992 kb on + strand, within HGI48_RS02245 at 488.993 kb on - strand, within HGI48_RS02245 at 489.092 kb on + strand, within HGI48_RS02245 at 489.093 kb on - strand, within HGI48_RS02245 at 489.201 kb on + strand at 489.201 kb on + strand at 489.202 kb on - strand at 489.202 kb on - strand at 489.202 kb on - strand at 489.209 kb on - strand at 489.262 kb on + strand, within HGI48_RS02250 at 489.262 kb on + strand, within HGI48_RS02250 at 489.263 kb on - strand, within HGI48_RS02250 at 489.263 kb on - strand, within HGI48_RS02250 at 489.265 kb on + strand, within HGI48_RS02250 at 489.265 kb on + strand, within HGI48_RS02250 at 489.265 kb on + strand, within HGI48_RS02250 at 489.266 kb on - strand, within HGI48_RS02250 at 489.272 kb on + strand, within HGI48_RS02250 at 489.273 kb on - strand, within HGI48_RS02250 at 489.273 kb on - strand, within HGI48_RS02250 at 489.322 kb on + strand, within HGI48_RS02250 at 489.322 kb on + strand, within HGI48_RS02250 at 489.323 kb on - strand, within HGI48_RS02250 at 489.358 kb on - strand at 489.358 kb on - strand at 489.358 kb on - strand at 489.358 kb on - strand at 489.365 kb on + strand at 489.366 kb on - strand at 489.440 kb on + strand, within HGI48_RS02255 at 489.440 kb on + strand, within HGI48_RS02255 at 489.440 kb on + strand, within HGI48_RS02255 at 489.441 kb on - strand, within HGI48_RS02255 at 489.441 kb on - strand, within HGI48_RS02255 at 489.442 kb on + strand at 489.443 kb on - strand, within HGI48_RS02255 at 489.443 kb on - strand, within HGI48_RS02255 at 489.515 kb on + strand, within HGI48_RS02255 at 489.515 kb on + strand, within HGI48_RS02255 at 489.516 kb on - strand, within HGI48_RS02255 at 489.516 kb on - strand, within HGI48_RS02255 at 489.516 kb on - strand at 489.713 kb on + strand, within HGI48_RS02255 at 489.714 kb on - strand, within HGI48_RS02255 at 489.714 kb on - strand, within HGI48_RS02255 at 489.714 kb on - strand, within HGI48_RS02255 at 489.773 kb on + strand, within HGI48_RS02255 at 489.773 kb on + strand, within HGI48_RS02255 at 489.773 kb on + strand, within HGI48_RS02255 at 489.774 kb on - strand at 489.774 kb on - strand, within HGI48_RS02255 at 489.774 kb on - strand at 489.774 kb on - strand, within HGI48_RS02255 at 489.774 kb on - strand at 489.774 kb on - strand, within HGI48_RS02255 at 489.774 kb on - strand, within HGI48_RS02255 at 489.774 kb on - strand, within HGI48_RS02255 at 489.774 kb on - strand at 489.786 kb on + strand, within HGI48_RS02255 at 489.786 kb on + strand, within HGI48_RS02255 at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.886 kb on + strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.887 kb on - strand at 489.909 kb on + strand at 489.909 kb on + strand at 489.910 kb on - strand at 489.910 kb on - strand at 489.910 kb on - strand at 489.989 kb on + strand at 489.989 kb on + strand at 489.989 kb on + strand at 489.989 kb on + strand at 489.989 kb on + strand at 489.989 kb on + strand at 489.990 kb on - strand at 489.997 kb on + strand at 489.997 kb on + strand at 489.997 kb on + strand at 489.997 kb on + strand at 489.998 kb on - strand at 489.998 kb on - strand at 489.998 kb on - strand at 490.046 kb on + strand at 490.047 kb on - strand at 490.047 kb on - strand at 490.047 kb on - strand at 490.050 kb on + strand at 490.051 kb on - strand at 490.051 kb on - strand at 490.051 kb on - strand at 490.051 kb on - strand at 490.090 kb on - strand at 490.147 kb on + strand at 490.147 kb on + strand at 490.148 kb on - strand at 490.148 kb on - strand at 490.148 kb on - strand at 490.148 kb on - strand at 490.148 kb on - strand at 490.233 kb on - strand at 490.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 488,430 + -0.1 488,432 + -1.7 488,466 + -0.9 488,466 + -1.4 488,469 + -0.5 488,469 + -0.3 488,469 + +1.7 488,475 + +0.9 488,475 + -0.3 488,475 + -0.4 488,475 + -0.1 488,475 + -0.7 488,475 + -0.1 488,476 - +0.2 488,476 - +0.2 488,476 - -1.0 488,476 - +0.2 488,476 - -1.3 488,481 + -0.5 488,482 - +0.1 488,503 + HGI48_RS02240 0.20 +0.1 488,503 + HGI48_RS02240 0.20 +0.7 488,504 - HGI48_RS02240 0.21 -1.4 488,504 - HGI48_RS02240 0.21 -2.4 488,517 - HGI48_RS02240 0.30 -0.4 488,541 + HGI48_RS02240 0.46 -1.4 488,553 + HGI48_RS02240 0.54 +0.7 488,557 - HGI48_RS02240 0.57 -0.8 488,557 - HGI48_RS02240 0.57 +1.2 488,557 - HGI48_RS02240 0.57 -0.2 488,617 + -0.7 488,618 - +0.4 488,618 - -0.5 488,637 + -0.4 488,637 + +1.6 488,638 - +0.9 488,644 - -0.9 488,734 + HGI48_RS02245 0.12 -2.3 488,813 + HGI48_RS02245 0.28 +0.7 488,813 + HGI48_RS02245 0.28 +0.3 488,975 + +1.7 488,992 + HGI48_RS02245 0.64 -2.1 488,992 + HGI48_RS02245 0.64 +0.7 488,993 - HGI48_RS02245 0.64 +0.2 489,092 + HGI48_RS02245 0.84 -0.5 489,093 - HGI48_RS02245 0.84 -0.0 489,201 + +1.1 489,201 + -0.2 489,202 - +0.0 489,202 - -0.1 489,202 - -0.4 489,209 - +0.7 489,262 + HGI48_RS02250 0.23 -0.7 489,262 + HGI48_RS02250 0.23 -0.2 489,263 - HGI48_RS02250 0.24 -1.7 489,263 - HGI48_RS02250 0.24 -0.8 489,265 + HGI48_RS02250 0.25 -0.5 489,265 + HGI48_RS02250 0.25 +0.3 489,265 + HGI48_RS02250 0.25 -0.6 489,266 - HGI48_RS02250 0.26 -1.9 489,272 + HGI48_RS02250 0.30 +0.3 489,273 - HGI48_RS02250 0.31 -0.4 489,273 - HGI48_RS02250 0.31 -0.5 489,322 + HGI48_RS02250 0.67 +0.7 489,322 + HGI48_RS02250 0.67 -1.2 489,323 - HGI48_RS02250 0.67 +0.2 489,358 - -0.5 489,358 - +0.9 489,358 - +0.3 489,358 - +0.7 489,365 + -0.9 489,366 - -0.0 489,440 + HGI48_RS02255 0.16 +0.2 489,440 + HGI48_RS02255 0.16 +0.7 489,440 + HGI48_RS02255 0.16 -2.5 489,441 - HGI48_RS02255 0.16 +1.2 489,441 - HGI48_RS02255 0.16 -0.1 489,442 + -0.7 489,443 - HGI48_RS02255 0.16 +0.6 489,443 - HGI48_RS02255 0.16 -1.1 489,515 + HGI48_RS02255 0.30 +0.9 489,515 + HGI48_RS02255 0.30 -0.5 489,516 - HGI48_RS02255 0.30 -0.2 489,516 - HGI48_RS02255 0.30 -0.7 489,516 - -0.7 489,713 + HGI48_RS02255 0.67 -1.2 489,714 - HGI48_RS02255 0.67 -0.1 489,714 - HGI48_RS02255 0.67 +0.1 489,714 - HGI48_RS02255 0.67 -0.7 489,773 + HGI48_RS02255 0.79 -2.3 489,773 + HGI48_RS02255 0.79 -1.1 489,773 + HGI48_RS02255 0.79 -0.7 489,774 - -0.7 489,774 - HGI48_RS02255 0.79 +0.2 489,774 - -0.7 489,774 - HGI48_RS02255 0.79 +0.3 489,774 - +0.3 489,774 - HGI48_RS02255 0.79 -2.3 489,774 - HGI48_RS02255 0.79 +0.2 489,774 - HGI48_RS02255 0.79 +1.1 489,774 - +0.9 489,786 + HGI48_RS02255 0.81 -0.1 489,786 + HGI48_RS02255 0.81 -1.7 489,886 + -0.6 489,886 + -0.3 489,886 + +1.2 489,886 + -0.3 489,886 + -0.5 489,886 + -0.7 489,886 + -1.4 489,886 + +0.9 489,886 + -0.1 489,886 + +0.5 489,886 + -1.1 489,886 + +0.2 489,887 - -0.7 489,887 - -1.4 489,887 - -0.4 489,887 - -0.9 489,887 - -1.1 489,887 - -0.4 489,887 - -1.1 489,887 - -0.4 489,887 - -0.1 489,909 + -1.4 489,909 + +0.9 489,910 - +0.8 489,910 - -0.1 489,910 - +0.4 489,989 + -0.7 489,989 + -0.0 489,989 + -0.5 489,989 + -3.1 489,989 + +0.6 489,989 + -1.7 489,990 - -1.4 489,997 + +1.5 489,997 + +0.7 489,997 + +0.9 489,997 + -1.0 489,998 - -0.1 489,998 - -0.0 489,998 - +0.9 490,046 + -2.5 490,047 - +1.4 490,047 - -1.2 490,047 - +0.6 490,050 + -0.7 490,051 - -0.1 490,051 - -1.1 490,051 - +0.6 490,051 - +0.0 490,090 - -0.4 490,147 + -0.2 490,147 + -0.9 490,148 - -0.1 490,148 - -1.4 490,148 - +0.0 490,148 - +0.2 490,148 - -0.3 490,233 - -0.3 490,240 + -0.1
Or see this region's nucleotide sequence