Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02010

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02005 and HGI48_RS02010 overlap by 8 nucleotidesHGI48_RS02010 and HGI48_RS02015 are separated by 2 nucleotides HGI48_RS02005: HGI48_RS02005 - AAA family ATPase, at 442,013 to 443,086 _RS02005 HGI48_RS02010: HGI48_RS02010 - AlpA family transcriptional regulator, at 443,079 to 443,300 _RS02010 HGI48_RS02015: HGI48_RS02015 - integrase domain-containing protein, at 443,303 to 444,181 _RS02015 Position (kb) 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 442.094 kb on - strandat 442.121 kb on + strand, within HGI48_RS02005at 442.174 kb on + strand, within HGI48_RS02005at 442.243 kb on + strand, within HGI48_RS02005at 442.244 kb on - strand, within HGI48_RS02005at 442.268 kb on - strand, within HGI48_RS02005at 442.344 kb on + strand, within HGI48_RS02005at 442.344 kb on + strand, within HGI48_RS02005at 442.344 kb on + strand, within HGI48_RS02005at 442.345 kb on - strand, within HGI48_RS02005at 442.345 kb on - strand, within HGI48_RS02005at 442.345 kb on - strand, within HGI48_RS02005at 442.345 kb on - strandat 442.346 kb on + strand, within HGI48_RS02005at 442.346 kb on + strand, within HGI48_RS02005at 442.346 kb on + strand, within HGI48_RS02005at 442.347 kb on - strand, within HGI48_RS02005at 442.347 kb on - strand, within HGI48_RS02005at 442.347 kb on - strandat 442.368 kb on + strand, within HGI48_RS02005at 442.369 kb on - strand, within HGI48_RS02005at 442.369 kb on - strand, within HGI48_RS02005at 442.369 kb on - strand, within HGI48_RS02005at 442.369 kb on - strand, within HGI48_RS02005at 442.419 kb on - strand, within HGI48_RS02005at 442.419 kb on - strand, within HGI48_RS02005at 442.504 kb on + strand, within HGI48_RS02005at 442.564 kb on + strandat 442.564 kb on + strand, within HGI48_RS02005at 442.564 kb on + strandat 442.565 kb on - strand, within HGI48_RS02005at 442.565 kb on - strand, within HGI48_RS02005at 442.565 kb on - strand, within HGI48_RS02005at 442.566 kb on + strand, within HGI48_RS02005at 442.566 kb on + strand, within HGI48_RS02005at 442.566 kb on + strand, within HGI48_RS02005at 442.567 kb on - strand, within HGI48_RS02005at 442.567 kb on - strand, within HGI48_RS02005at 442.567 kb on - strand, within HGI48_RS02005at 442.567 kb on - strand, within HGI48_RS02005at 442.567 kb on - strand, within HGI48_RS02005at 442.567 kb on - strandat 442.583 kb on - strand, within HGI48_RS02005at 442.669 kb on + strand, within HGI48_RS02005at 442.669 kb on + strand, within HGI48_RS02005at 442.685 kb on - strand, within HGI48_RS02005at 442.703 kb on + strand, within HGI48_RS02005at 442.703 kb on + strand, within HGI48_RS02005at 442.712 kb on + strand, within HGI48_RS02005at 442.712 kb on + strand, within HGI48_RS02005at 442.713 kb on - strand, within HGI48_RS02005at 442.713 kb on - strand, within HGI48_RS02005at 442.713 kb on - strand, within HGI48_RS02005at 442.715 kb on + strand, within HGI48_RS02005at 442.715 kb on + strand, within HGI48_RS02005at 442.715 kb on + strand, within HGI48_RS02005at 442.715 kb on + strandat 442.715 kb on + strand, within HGI48_RS02005at 442.716 kb on - strand, within HGI48_RS02005at 442.716 kb on - strand, within HGI48_RS02005at 442.716 kb on - strand, within HGI48_RS02005at 442.786 kb on + strand, within HGI48_RS02005at 442.848 kb on + strand, within HGI48_RS02005at 442.848 kb on + strand, within HGI48_RS02005at 442.848 kb on + strandat 442.848 kb on + strand, within HGI48_RS02005at 442.848 kb on + strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.849 kb on - strand, within HGI48_RS02005at 442.852 kb on + strand, within HGI48_RS02005at 442.852 kb on + strand, within HGI48_RS02005at 442.852 kb on + strand, within HGI48_RS02005at 442.853 kb on - strand, within HGI48_RS02005at 442.853 kb on - strand, within HGI48_RS02005at 442.938 kb on + strand, within HGI48_RS02005at 442.938 kb on + strand, within HGI48_RS02005at 442.939 kb on - strand, within HGI48_RS02005at 442.986 kb on + strandat 442.986 kb on + strandat 442.986 kb on + strandat 442.986 kb on + strandat 442.987 kb on - strandat 442.987 kb on - strandat 443.001 kb on + strandat 443.002 kb on - strandat 443.002 kb on - strandat 443.080 kb on + strandat 443.080 kb on + strandat 443.081 kb on - strandat 443.110 kb on - strand, within HGI48_RS02010at 443.129 kb on + strand, within HGI48_RS02010at 443.130 kb on - strand, within HGI48_RS02010at 443.230 kb on + strand, within HGI48_RS02010at 443.231 kb on - strand, within HGI48_RS02010at 443.231 kb on - strandat 443.265 kb on + strand, within HGI48_RS02010at 443.274 kb on + strand, within HGI48_RS02010at 443.274 kb on + strand, within HGI48_RS02010at 443.317 kb on + strandat 443.318 kb on - strandat 443.323 kb on - strandat 443.418 kb on + strandat 443.418 kb on + strand, within HGI48_RS02015at 443.419 kb on - strand, within HGI48_RS02015at 443.421 kb on + strand, within HGI48_RS02015at 443.428 kb on + strand, within HGI48_RS02015at 443.498 kb on - strand, within HGI48_RS02015at 443.546 kb on + strand, within HGI48_RS02015at 443.557 kb on + strand, within HGI48_RS02015at 443.557 kb on + strand, within HGI48_RS02015at 443.557 kb on + strand, within HGI48_RS02015at 443.558 kb on - strand, within HGI48_RS02015at 443.558 kb on - strand, within HGI48_RS02015at 443.566 kb on + strand, within HGI48_RS02015at 443.566 kb on + strand, within HGI48_RS02015at 443.567 kb on - strand, within HGI48_RS02015at 443.567 kb on - strand, within HGI48_RS02015at 443.647 kb on + strand, within HGI48_RS02015at 443.648 kb on - strand, within HGI48_RS02015at 443.650 kb on + strand, within HGI48_RS02015at 443.779 kb on + strand, within HGI48_RS02015at 443.780 kb on - strand, within HGI48_RS02015at 443.813 kb on + strand, within HGI48_RS02015at 443.887 kb on + strand, within HGI48_RS02015at 443.887 kb on + strand, within HGI48_RS02015at 443.887 kb on + strandat 443.888 kb on - strand, within HGI48_RS02015at 443.888 kb on - strand, within HGI48_RS02015at 443.909 kb on - strand, within HGI48_RS02015at 443.966 kb on - strand, within HGI48_RS02015at 443.974 kb on + strand, within HGI48_RS02015at 443.975 kb on - strand, within HGI48_RS02015at 443.987 kb on - strandat 444.012 kb on + strandat 444.012 kb on + strand, within HGI48_RS02015at 444.012 kb on + strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.013 kb on - strand, within HGI48_RS02015at 444.023 kb on - strandat 444.028 kb on + strand, within HGI48_RS02015at 444.028 kb on + strand, within HGI48_RS02015at 444.029 kb on - strandat 444.047 kb on - strandat 444.124 kb on + strandat 444.170 kb on + strandat 444.170 kb on + strandat 444.171 kb on - strandat 444.175 kb on + strandat 444.175 kb on + strandat 444.176 kb on - strandat 444.176 kb on - strandat 444.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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442,094 - -0.5
442,121 + HGI48_RS02005 0.10 -0.4
442,174 + HGI48_RS02005 0.15 -0.9
442,243 + HGI48_RS02005 0.21 +0.3
442,244 - HGI48_RS02005 0.22 +0.5
442,268 - HGI48_RS02005 0.24 +0.5
442,344 + HGI48_RS02005 0.31 -1.2
442,344 + HGI48_RS02005 0.31 +0.2
442,344 + HGI48_RS02005 0.31 -0.3
442,345 - HGI48_RS02005 0.31 -0.9
442,345 - HGI48_RS02005 0.31 +1.1
442,345 - HGI48_RS02005 0.31 +0.1
442,345 - -0.6
442,346 + HGI48_RS02005 0.31 -0.9
442,346 + HGI48_RS02005 0.31 -0.4
442,346 + HGI48_RS02005 0.31 +0.2
442,347 - HGI48_RS02005 0.31 -0.6
442,347 - HGI48_RS02005 0.31 +0.3
442,347 - -0.6
442,368 + HGI48_RS02005 0.33 -1.0
442,369 - HGI48_RS02005 0.33 +0.2
442,369 - HGI48_RS02005 0.33 +0.1
442,369 - HGI48_RS02005 0.33 -1.9
442,369 - HGI48_RS02005 0.33 -0.1
442,419 - HGI48_RS02005 0.38 -0.2
442,419 - HGI48_RS02005 0.38 -0.2
442,504 + HGI48_RS02005 0.46 -0.9
442,564 + -0.6
442,564 + HGI48_RS02005 0.51 +0.4
442,564 + +0.9
442,565 - HGI48_RS02005 0.51 -0.1
442,565 - HGI48_RS02005 0.51 +1.3
442,565 - HGI48_RS02005 0.51 -1.1
442,566 + HGI48_RS02005 0.51 +1.1
442,566 + HGI48_RS02005 0.51 +0.5
442,566 + HGI48_RS02005 0.51 +1.2
442,567 - HGI48_RS02005 0.52 +0.2
442,567 - HGI48_RS02005 0.52 -0.9
442,567 - HGI48_RS02005 0.52 -0.4
442,567 - HGI48_RS02005 0.52 +0.4
442,567 - HGI48_RS02005 0.52 -0.0
442,567 - -0.1
442,583 - HGI48_RS02005 0.53 -0.9
442,669 + HGI48_RS02005 0.61 +1.6
442,669 + HGI48_RS02005 0.61 +1.4
442,685 - HGI48_RS02005 0.63 +0.5
442,703 + HGI48_RS02005 0.64 +1.1
442,703 + HGI48_RS02005 0.64 +0.7
442,712 + HGI48_RS02005 0.65 -0.6
442,712 + HGI48_RS02005 0.65 -1.1
442,713 - HGI48_RS02005 0.65 -1.9
442,713 - HGI48_RS02005 0.65 +0.5
442,713 - HGI48_RS02005 0.65 -0.4
442,715 + HGI48_RS02005 0.65 +0.2
442,715 + HGI48_RS02005 0.65 +0.1
442,715 + HGI48_RS02005 0.65 +0.9
442,715 + +0.9
442,715 + HGI48_RS02005 0.65 +0.3
442,716 - HGI48_RS02005 0.65 -1.2
442,716 - HGI48_RS02005 0.65 +1.4
442,716 - HGI48_RS02005 0.65 -0.3
442,786 + HGI48_RS02005 0.72 +0.5
442,848 + HGI48_RS02005 0.78 -0.2
442,848 + HGI48_RS02005 0.78 +0.2
442,848 + +1.9
442,848 + HGI48_RS02005 0.78 -1.6
442,848 + HGI48_RS02005 0.78 -2.1
442,849 - HGI48_RS02005 0.78 +0.9
442,849 - HGI48_RS02005 0.78 +0.9
442,849 - HGI48_RS02005 0.78 -1.9
442,849 - HGI48_RS02005 0.78 -1.4
442,849 - HGI48_RS02005 0.78 -0.8
442,849 - HGI48_RS02005 0.78 +0.7
442,849 - HGI48_RS02005 0.78 -0.4
442,852 + HGI48_RS02005 0.78 +0.8
442,852 + HGI48_RS02005 0.78 -1.2
442,852 + HGI48_RS02005 0.78 +0.9
442,853 - HGI48_RS02005 0.78 +0.4
442,853 - HGI48_RS02005 0.78 -0.4
442,938 + HGI48_RS02005 0.86 +0.1
442,938 + HGI48_RS02005 0.86 +0.3
442,939 - HGI48_RS02005 0.86 -1.1
442,986 + -0.3
442,986 + -1.0
442,986 + -1.1
442,986 + +0.9
442,987 - -1.1
442,987 - -0.6
443,001 + -0.1
443,002 - -0.6
443,002 - +0.4
443,080 + -2.4
443,080 + -0.1
443,081 - -1.5
443,110 - HGI48_RS02010 0.14 -0.5
443,129 + HGI48_RS02010 0.23 -0.1
443,130 - HGI48_RS02010 0.23 -1.3
443,230 + HGI48_RS02010 0.68 -1.5
443,231 - HGI48_RS02010 0.68 -2.1
443,231 - +1.4
443,265 + HGI48_RS02010 0.84 -0.4
443,274 + HGI48_RS02010 0.88 -2.1
443,274 + HGI48_RS02010 0.88 +0.6
443,317 + -0.1
443,318 - -1.8
443,323 - -2.8
443,418 + +1.5
443,418 + HGI48_RS02015 0.13 -0.3
443,419 - HGI48_RS02015 0.13 -0.9
443,421 + HGI48_RS02015 0.13 -1.1
443,428 + HGI48_RS02015 0.14 -1.1
443,498 - HGI48_RS02015 0.22 +0.5
443,546 + HGI48_RS02015 0.28 +0.4
443,557 + HGI48_RS02015 0.29 +0.7
443,557 + HGI48_RS02015 0.29 +0.8
443,557 + HGI48_RS02015 0.29 -0.3
443,558 - HGI48_RS02015 0.29 -0.3
443,558 - HGI48_RS02015 0.29 +0.4
443,566 + HGI48_RS02015 0.30 -1.9
443,566 + HGI48_RS02015 0.30 +1.2
443,567 - HGI48_RS02015 0.30 +0.5
443,567 - HGI48_RS02015 0.30 -0.5
443,647 + HGI48_RS02015 0.39 -1.8
443,648 - HGI48_RS02015 0.39 -0.0
443,650 + HGI48_RS02015 0.39 -1.4
443,779 + HGI48_RS02015 0.54 +1.2
443,780 - HGI48_RS02015 0.54 +1.1
443,813 + HGI48_RS02015 0.58 -0.4
443,887 + HGI48_RS02015 0.66 +0.5
443,887 + HGI48_RS02015 0.66 -0.0
443,887 + +0.9
443,888 - HGI48_RS02015 0.67 +0.2
443,888 - HGI48_RS02015 0.67 -0.4
443,909 - HGI48_RS02015 0.69 +0.9
443,966 - HGI48_RS02015 0.75 -1.6
443,974 + HGI48_RS02015 0.76 +0.3
443,975 - HGI48_RS02015 0.76 -1.2
443,987 - +0.9
444,012 + +0.9
444,012 + HGI48_RS02015 0.81 -0.3
444,012 + HGI48_RS02015 0.81 -1.2
444,013 - HGI48_RS02015 0.81 -0.5
444,013 - HGI48_RS02015 0.81 +0.1
444,013 - HGI48_RS02015 0.81 -0.4
444,013 - HGI48_RS02015 0.81 +1.5
444,013 - HGI48_RS02015 0.81 +0.4
444,013 - HGI48_RS02015 0.81 +0.5
444,023 - +0.4
444,028 + HGI48_RS02015 0.82 +1.5
444,028 + HGI48_RS02015 0.82 +0.4
444,029 - -0.6
444,047 - -0.1
444,124 + -0.7
444,170 + -1.1
444,170 + +0.5
444,171 - +0.7
444,175 + -0.4
444,175 + -0.6
444,176 - +0.5
444,176 - -1.4
444,181 + -0.4

Or see this region's nucleotide sequence