Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01945 and HGI48_RS01950 are separated by 13 nucleotides HGI48_RS01950 and HGI48_RS01955 are separated by 114 nucleotides HGI48_RS01955 and HGI48_RS01960 are separated by 283 nucleotides
HGI48_RS01945: HGI48_RS01945 - valine--tRNA ligase, at 430,165 to 433,035
_RS01945
HGI48_RS01950: HGI48_RS01950 - DNA polymerase III subunit chi, at 433,049 to 433,534
_RS01950
HGI48_RS01955: HGI48_RS01955 - leucyl aminopeptidase, at 433,649 to 435,157
_RS01955
HGI48_RS01960: HGI48_RS01960 - LPS export ABC transporter permease LptF, at 435,441 to 436,559
_RS01960
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.571 kb on - strand at 433.651 kb on - strand at 433.779 kb on + strand at 433.779 kb on + strand at 433.885 kb on - strand, within HGI48_RS01955 at 434.067 kb on + strand, within HGI48_RS01955 at 434.068 kb on - strand, within HGI48_RS01955 at 434.185 kb on + strand, within HGI48_RS01955 at 434.260 kb on - strand, within HGI48_RS01955 at 434.400 kb on + strand, within HGI48_RS01955 at 434.401 kb on - strand, within HGI48_RS01955 at 434.454 kb on + strand, within HGI48_RS01955 at 434.465 kb on - strand at 434.744 kb on - strand, within HGI48_RS01955 at 434.746 kb on - strand, within HGI48_RS01955 at 434.791 kb on - strand, within HGI48_RS01955 at 434.807 kb on + strand, within HGI48_RS01955 at 434.808 kb on - strand, within HGI48_RS01955 at 434.808 kb on - strand, within HGI48_RS01955 at 434.964 kb on - strand, within HGI48_RS01955 at 434.964 kb on - strand, within HGI48_RS01955 at 434.964 kb on - strand, within HGI48_RS01955 at 435.159 kb on + strand at 435.160 kb on - strand at 435.160 kb on - strand at 435.194 kb on + strand at 435.201 kb on - strand at 435.221 kb on - strand at 435.244 kb on + strand at 435.255 kb on - strand at 435.260 kb on - strand at 435.289 kb on - strand at 435.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 433,571 - -0.0 433,651 - -0.6 433,779 + -0.6 433,779 + -0.0 433,885 - HGI48_RS01955 0.16 -0.9 434,067 + HGI48_RS01955 0.28 -0.4 434,068 - HGI48_RS01955 0.28 -0.0 434,185 + HGI48_RS01955 0.36 +0.2 434,260 - HGI48_RS01955 0.40 -0.2 434,400 + HGI48_RS01955 0.50 -1.4 434,401 - HGI48_RS01955 0.50 -2.5 434,454 + HGI48_RS01955 0.53 -0.9 434,465 - +0.4 434,744 - HGI48_RS01955 0.73 -3.0 434,746 - HGI48_RS01955 0.73 -0.4 434,791 - HGI48_RS01955 0.76 +0.2 434,807 + HGI48_RS01955 0.77 +1.3 434,808 - HGI48_RS01955 0.77 -0.6 434,808 - HGI48_RS01955 0.77 -1.2 434,964 - HGI48_RS01955 0.87 -1.3 434,964 - HGI48_RS01955 0.87 -0.8 434,964 - HGI48_RS01955 0.87 -1.9 435,159 + -1.1 435,160 - -1.6 435,160 - -1.6 435,194 + -0.0 435,201 - -1.2 435,221 - -1.2 435,244 + -1.6 435,255 - -1.4 435,260 - -1.4 435,289 - -2.0 435,289 - -1.9
Or see this region's nucleotide sequence