Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01840 and HGI48_RS01845 are separated by 27 nucleotides HGI48_RS01845 and HGI48_RS01850 overlap by 8 nucleotides
HGI48_RS01840: HGI48_RS01840 - ABC transporter permease, at 409,238 to 410,260
_RS01840
HGI48_RS01845: HGI48_RS01845 - ABC transporter permease, at 410,288 to 411,109
_RS01845
HGI48_RS01850: HGI48_RS01850 - ABC transporter ATP-binding protein, at 411,102 to 412,697
_RS01850
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.822 kb on + strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.943 kb on + strand, within HGI48_RS01840 at 409.943 kb on + strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand at 410.036 kb on - strand, within HGI48_RS01840 at 410.054 kb on + strand, within HGI48_RS01840 at 410.054 kb on + strand, within HGI48_RS01840 at 410.055 kb on - strand, within HGI48_RS01840 at 410.055 kb on - strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.115 kb on - strand, within HGI48_RS01840 at 410.115 kb on - strand at 410.143 kb on + strand at 410.144 kb on - strand, within HGI48_RS01840 at 410.144 kb on - strand, within HGI48_RS01840 at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.197 kb on + strand at 410.198 kb on - strand at 410.279 kb on + strand at 410.279 kb on + strand at 410.280 kb on - strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.341 kb on + strand at 410.675 kb on - strand, within HGI48_RS01845 at 410.675 kb on - strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand at 410.725 kb on - strand, within HGI48_RS01845 at 411.067 kb on - strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.273 kb on - strand, within HGI48_RS01850 at 411.293 kb on + strand, within HGI48_RS01850 at 411.293 kb on + strand at 411.293 kb on + strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.305 kb on + strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.382 kb on - strand, within HGI48_RS01850 at 411.702 kb on - strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.849 kb on + strand, within HGI48_RS01850 at 411.850 kb on - strand, within HGI48_RS01850 at 411.866 kb on - strand, within HGI48_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 409,822 + HGI48_RS01840 0.57 +0.3 409,823 - HGI48_RS01840 0.57 +0.4 409,823 - HGI48_RS01840 0.57 -0.4 409,823 - HGI48_RS01840 0.57 +0.8 409,943 + HGI48_RS01840 0.69 -0.0 409,943 + HGI48_RS01840 0.69 +0.3 409,944 - HGI48_RS01840 0.69 -1.1 409,944 - HGI48_RS01840 0.69 -0.6 409,944 - HGI48_RS01840 0.69 +0.6 409,944 - HGI48_RS01840 0.69 -0.2 409,944 - HGI48_RS01840 0.69 +0.8 409,944 - HGI48_RS01840 0.69 +1.0 409,944 - +2.5 410,036 - HGI48_RS01840 0.78 +0.5 410,054 + HGI48_RS01840 0.80 +0.4 410,054 + HGI48_RS01840 0.80 -2.0 410,055 - HGI48_RS01840 0.80 +0.5 410,055 - HGI48_RS01840 0.80 +0.3 410,114 + HGI48_RS01840 0.86 +0.7 410,114 + HGI48_RS01840 0.86 -0.2 410,114 + HGI48_RS01840 0.86 -0.5 410,114 + HGI48_RS01840 0.86 -1.6 410,114 + HGI48_RS01840 0.86 +1.0 410,114 + HGI48_RS01840 0.86 -0.7 410,114 + HGI48_RS01840 0.86 -0.2 410,114 + HGI48_RS01840 0.86 +1.3 410,114 + HGI48_RS01840 0.86 -0.0 410,115 - HGI48_RS01840 0.86 -0.4 410,115 - +1.0 410,143 + +1.0 410,144 - HGI48_RS01840 0.89 -0.4 410,144 - HGI48_RS01840 0.89 -0.6 410,186 + +0.5 410,186 + -0.6 410,186 + -0.0 410,186 + +0.2 410,187 - -1.0 410,187 - -0.0 410,187 - -1.4 410,187 - -0.9 410,197 + +1.0 410,198 - -0.9 410,279 + -0.7 410,279 + +1.0 410,280 - -0.3 410,285 + -1.6 410,285 + -1.4 410,285 + -1.4 410,285 + +1.2 410,285 + -0.3 410,285 + -2.2 410,285 + -0.0 410,285 + -2.4 410,286 - +0.1 410,286 - -0.4 410,286 - -2.1 410,286 - -0.0 410,286 - -0.0 410,286 - -1.0 410,286 - -0.3 410,286 - +0.8 410,286 - -0.6 410,286 - +0.5 410,286 - +0.1 410,286 - +0.5 410,286 - -0.6 410,341 + +0.5 410,675 - HGI48_RS01845 0.47 -2.6 410,675 - HGI48_RS01845 0.47 -1.2 410,724 + HGI48_RS01845 0.53 -0.6 410,724 + HGI48_RS01845 0.53 -0.0 410,724 + HGI48_RS01845 0.53 -2.2 410,724 + HGI48_RS01845 0.53 -0.5 410,724 + HGI48_RS01845 0.53 -1.0 410,725 - HGI48_RS01845 0.53 +0.2 410,725 - HGI48_RS01845 0.53 -0.8 410,725 - +1.5 410,725 - HGI48_RS01845 0.53 -1.0 411,067 - -0.6 411,112 + +0.4 411,112 + -0.6 411,112 + -0.5 411,113 - -1.0 411,113 - -0.6 411,113 - -0.5 411,196 + -1.0 411,196 + -0.0 411,196 + +0.2 411,197 - +0.3 411,197 - +0.2 411,197 - -1.2 411,273 - HGI48_RS01850 0.11 +0.7 411,293 + HGI48_RS01850 0.12 -0.0 411,293 + +1.4 411,293 + HGI48_RS01850 0.12 -0.0 411,294 - HGI48_RS01850 0.12 -0.0 411,294 - HGI48_RS01850 0.12 -0.0 411,294 - HGI48_RS01850 0.12 -0.3 411,305 + HGI48_RS01850 0.13 -1.0 411,353 - HGI48_RS01850 0.16 +1.3 411,353 - HGI48_RS01850 0.16 -0.0 411,381 + HGI48_RS01850 0.17 +0.3 411,381 + HGI48_RS01850 0.17 -0.6 411,381 + HGI48_RS01850 0.17 +0.8 411,382 - HGI48_RS01850 0.18 -1.5 411,702 - HGI48_RS01850 0.38 +1.0 411,729 + HGI48_RS01850 0.39 +1.2 411,729 + HGI48_RS01850 0.39 +1.6 411,729 + HGI48_RS01850 0.39 +0.5 411,729 + HGI48_RS01850 0.39 -0.5 411,729 + HGI48_RS01850 0.39 -1.2 411,730 - HGI48_RS01850 0.39 -0.4 411,730 - HGI48_RS01850 0.39 -0.2 411,730 - HGI48_RS01850 0.39 -0.3 411,776 + HGI48_RS01850 0.42 -0.3 411,776 + HGI48_RS01850 0.42 -1.7 411,776 + HGI48_RS01850 0.42 -0.8 411,849 + HGI48_RS01850 0.47 +1.0 411,850 - HGI48_RS01850 0.47 +0.2 411,866 - HGI48_RS01850 0.48 -0.4
Or see this region's nucleotide sequence