Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01705

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01700 and HGI48_RS01705 are separated by 63 nucleotidesHGI48_RS01705 and HGI48_RS01710 are separated by 177 nucleotides HGI48_RS01700: HGI48_RS01700 - AraC family transcriptional regulator, at 376,052 to 376,966 _RS01700 HGI48_RS01705: HGI48_RS01705 - DedA family protein, at 377,030 to 377,689 _RS01705 HGI48_RS01710: HGI48_RS01710 - cystathionine beta-lyase, at 377,867 to 379,060 _RS01710 Position (kb) 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1at 376.049 kb on - strandat 376.049 kb on - strandat 376.049 kb on - strandat 376.080 kb on + strandat 376.081 kb on - strandat 376.100 kb on + strandat 376.100 kb on + strandat 376.100 kb on + strandat 376.100 kb on + strandat 376.101 kb on - strandat 376.154 kb on + strand, within HGI48_RS01700at 376.154 kb on + strand, within HGI48_RS01700at 376.155 kb on - strand, within HGI48_RS01700at 376.190 kb on + strand, within HGI48_RS01700at 376.260 kb on - strand, within HGI48_RS01700at 376.274 kb on + strand, within HGI48_RS01700at 376.274 kb on + strand, within HGI48_RS01700at 376.274 kb on + strand, within HGI48_RS01700at 376.274 kb on + strand, within HGI48_RS01700at 376.275 kb on - strand, within HGI48_RS01700at 376.275 kb on - strand, within HGI48_RS01700at 376.275 kb on - strand, within HGI48_RS01700at 376.278 kb on + strand, within HGI48_RS01700at 376.278 kb on + strand, within HGI48_RS01700at 376.278 kb on + strandat 376.278 kb on + strand, within HGI48_RS01700at 376.278 kb on + strand, within HGI48_RS01700at 376.279 kb on - strandat 376.279 kb on - strand, within HGI48_RS01700at 376.279 kb on - strand, within HGI48_RS01700at 376.279 kb on - strand, within HGI48_RS01700at 376.555 kb on + strand, within HGI48_RS01700at 376.556 kb on - strand, within HGI48_RS01700at 376.560 kb on - strand, within HGI48_RS01700at 376.560 kb on - strand, within HGI48_RS01700at 376.566 kb on + strand, within HGI48_RS01700at 376.566 kb on + strand, within HGI48_RS01700at 376.566 kb on + strand, within HGI48_RS01700at 376.566 kb on + strand, within HGI48_RS01700at 376.566 kb on + strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.567 kb on - strand, within HGI48_RS01700at 376.594 kb on - strand, within HGI48_RS01700at 376.614 kb on - strand, within HGI48_RS01700at 376.649 kb on + strand, within HGI48_RS01700at 376.649 kb on + strand, within HGI48_RS01700at 376.650 kb on - strand, within HGI48_RS01700at 376.733 kb on - strand, within HGI48_RS01700at 376.733 kb on - strand, within HGI48_RS01700at 376.733 kb on - strand, within HGI48_RS01700at 376.753 kb on + strand, within HGI48_RS01700at 376.754 kb on - strand, within HGI48_RS01700at 376.769 kb on + strand, within HGI48_RS01700at 376.769 kb on + strand, within HGI48_RS01700at 376.773 kb on + strand, within HGI48_RS01700at 376.773 kb on + strand, within HGI48_RS01700at 376.773 kb on + strandat 376.773 kb on + strand, within HGI48_RS01700at 376.773 kb on + strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.774 kb on - strand, within HGI48_RS01700at 376.845 kb on + strand, within HGI48_RS01700at 376.845 kb on + strand, within HGI48_RS01700at 377.147 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.245 kb on + strand, within HGI48_RS01705at 377.246 kb on - strand, within HGI48_RS01705at 377.361 kb on + strand, within HGI48_RS01705at 377.426 kb on + strand, within HGI48_RS01705at 377.426 kb on + strand, within HGI48_RS01705at 377.427 kb on - strand, within HGI48_RS01705at 377.427 kb on - strand, within HGI48_RS01705at 377.430 kb on + strand, within HGI48_RS01705at 377.430 kb on + strand, within HGI48_RS01705at 377.430 kb on + strand, within HGI48_RS01705at 377.430 kb on + strand, within HGI48_RS01705at 377.605 kb on - strand, within HGI48_RS01705at 377.605 kb on - strand, within HGI48_RS01705at 377.668 kb on + strandat 377.730 kb on + strandat 377.765 kb on - strandat 377.784 kb on + strandat 377.784 kb on + strandat 377.784 kb on + strandat 377.784 kb on + strandat 377.784 kb on + strandat 377.785 kb on - strandat 377.785 kb on - strandat 377.785 kb on - strandat 377.785 kb on - strandat 377.799 kb on + strandat 377.800 kb on - strandat 377.803 kb on - strandat 377.803 kb on - strandat 377.803 kb on - strandat 377.803 kb on - strandat 377.803 kb on - strandat 377.811 kb on + strandat 377.812 kb on - strandat 377.812 kb on - strandat 377.812 kb on - strandat 377.812 kb on - strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.813 kb on + strandat 377.814 kb on - strandat 377.814 kb on - strandat 377.814 kb on - strandat 377.814 kb on - strandat 377.814 kb on - strandat 377.814 kb on - strandat 377.829 kb on + strandat 377.829 kb on + strandat 377.829 kb on + strandat 377.829 kb on + strandat 377.829 kb on + strandat 377.830 kb on - strandat 377.860 kb on - strandat 378.049 kb on - strandat 378.081 kb on + strand, within HGI48_RS01710at 378.082 kb on - strand, within HGI48_RS01710at 378.310 kb on + strand, within HGI48_RS01710at 378.310 kb on + strand, within HGI48_RS01710at 378.311 kb on - strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.312 kb on + strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strand, within HGI48_RS01710at 378.313 kb on - strandat 378.313 kb on - strand, within HGI48_RS01710at 378.429 kb on + strand, within HGI48_RS01710at 378.429 kb on + strand, within HGI48_RS01710at 378.429 kb on + strand, within HGI48_RS01710at 378.429 kb on + strand, within HGI48_RS01710at 378.429 kb on + strandat 378.429 kb on + strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.430 kb on - strand, within HGI48_RS01710at 378.455 kb on - strand, within HGI48_RS01710at 378.455 kb on - strand, within HGI48_RS01710at 378.455 kb on - strand, within HGI48_RS01710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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376,049 - +0.2
376,049 - -0.6
376,049 - -0.2
376,080 + +0.7
376,081 - +1.0
376,100 + +0.5
376,100 + +0.1
376,100 + +0.2
376,100 + -1.3
376,101 - -1.5
376,154 + HGI48_RS01700 0.11 +1.2
376,154 + HGI48_RS01700 0.11 +0.4
376,155 - HGI48_RS01700 0.11 +0.1
376,190 + HGI48_RS01700 0.15 -0.8
376,260 - HGI48_RS01700 0.23 -0.9
376,274 + HGI48_RS01700 0.24 +0.0
376,274 + HGI48_RS01700 0.24 +1.0
376,274 + HGI48_RS01700 0.24 -0.7
376,274 + HGI48_RS01700 0.24 -0.3
376,275 - HGI48_RS01700 0.24 -0.6
376,275 - HGI48_RS01700 0.24 +1.3
376,275 - HGI48_RS01700 0.24 +1.2
376,278 + HGI48_RS01700 0.25 -0.0
376,278 + HGI48_RS01700 0.25 +0.3
376,278 + -0.6
376,278 + HGI48_RS01700 0.25 +0.3
376,278 + HGI48_RS01700 0.25 +0.2
376,279 - -0.6
376,279 - HGI48_RS01700 0.25 +1.0
376,279 - HGI48_RS01700 0.25 -0.8
376,279 - HGI48_RS01700 0.25 +0.6
376,555 + HGI48_RS01700 0.55 -0.6
376,556 - HGI48_RS01700 0.55 +0.7
376,560 - HGI48_RS01700 0.56 +0.3
376,560 - HGI48_RS01700 0.56 +0.9
376,566 + HGI48_RS01700 0.56 -0.8
376,566 + HGI48_RS01700 0.56 -1.1
376,566 + HGI48_RS01700 0.56 +0.6
376,566 + HGI48_RS01700 0.56 -2.0
376,566 + HGI48_RS01700 0.56 -2.2
376,567 - HGI48_RS01700 0.56 -1.5
376,567 - HGI48_RS01700 0.56 +0.5
376,567 - HGI48_RS01700 0.56 -1.6
376,567 - HGI48_RS01700 0.56 +1.3
376,567 - HGI48_RS01700 0.56 -0.6
376,567 - HGI48_RS01700 0.56 -0.4
376,567 - HGI48_RS01700 0.56 -0.0
376,567 - HGI48_RS01700 0.56 +0.4
376,567 - HGI48_RS01700 0.56 -1.0
376,567 - HGI48_RS01700 0.56 -0.3
376,594 - HGI48_RS01700 0.59 +1.0
376,614 - HGI48_RS01700 0.61 -2.3
376,649 + HGI48_RS01700 0.65 -0.6
376,649 + HGI48_RS01700 0.65 -0.4
376,650 - HGI48_RS01700 0.65 -1.3
376,733 - HGI48_RS01700 0.74 +1.3
376,733 - HGI48_RS01700 0.74 -0.2
376,733 - HGI48_RS01700 0.74 -0.7
376,753 + HGI48_RS01700 0.77 -0.0
376,754 - HGI48_RS01700 0.77 -1.0
376,769 + HGI48_RS01700 0.78 +0.1
376,769 + HGI48_RS01700 0.78 -1.3
376,773 + HGI48_RS01700 0.79 -0.0
376,773 + HGI48_RS01700 0.79 +0.1
376,773 + +0.4
376,773 + HGI48_RS01700 0.79 +0.5
376,773 + HGI48_RS01700 0.79 -2.3
376,774 - HGI48_RS01700 0.79 +0.4
376,774 - HGI48_RS01700 0.79 +0.4
376,774 - HGI48_RS01700 0.79 -0.0
376,774 - HGI48_RS01700 0.79 -1.0
376,774 - HGI48_RS01700 0.79 -1.8
376,774 - HGI48_RS01700 0.79 -1.0
376,774 - HGI48_RS01700 0.79 +0.7
376,774 - HGI48_RS01700 0.79 -0.0
376,845 + HGI48_RS01700 0.87 -0.4
376,845 + HGI48_RS01700 0.87 -0.2
377,147 + HGI48_RS01705 0.18 +0.3
377,245 + HGI48_RS01705 0.33 +0.4
377,245 + HGI48_RS01705 0.33 -1.0
377,245 + HGI48_RS01705 0.33 +0.6
377,245 + HGI48_RS01705 0.33 -0.6
377,245 + HGI48_RS01705 0.33 +1.0
377,245 + HGI48_RS01705 0.33 -1.0
377,246 - HGI48_RS01705 0.33 +0.7
377,361 + HGI48_RS01705 0.50 -1.6
377,426 + HGI48_RS01705 0.60 +0.0
377,426 + HGI48_RS01705 0.60 -0.0
377,427 - HGI48_RS01705 0.60 -1.2
377,427 - HGI48_RS01705 0.60 -0.2
377,430 + HGI48_RS01705 0.61 -0.3
377,430 + HGI48_RS01705 0.61 -0.1
377,430 + HGI48_RS01705 0.61 +0.6
377,430 + HGI48_RS01705 0.61 +0.4
377,605 - HGI48_RS01705 0.87 -0.0
377,605 - HGI48_RS01705 0.87 +1.4
377,668 + -1.0
377,730 + -0.3
377,765 - -0.6
377,784 + +0.7
377,784 + +0.4
377,784 + +0.9
377,784 + -0.0
377,784 + +1.4
377,785 - -0.1
377,785 - +0.4
377,785 - -0.9
377,785 - +0.8
377,799 + +0.3
377,800 - -1.3
377,803 - +1.0
377,803 - -0.5
377,803 - -1.7
377,803 - -2.2
377,803 - +0.3
377,811 + -0.6
377,812 - +0.4
377,812 - -0.0
377,812 - -0.3
377,812 - -0.0
377,813 + -1.3
377,813 + -0.2
377,813 + +0.2
377,813 + +0.7
377,813 + -0.9
377,813 + -0.6
377,813 + +0.8
377,813 + -0.8
377,814 - +0.3
377,814 - -1.3
377,814 - +1.0
377,814 - -0.3
377,814 - -0.1
377,814 - -0.3
377,829 + -0.8
377,829 + -0.6
377,829 + -0.3
377,829 + +0.4
377,829 + -0.6
377,830 - -0.8
377,860 - +0.9
378,049 - +1.0
378,081 + HGI48_RS01710 0.18 +0.7
378,082 - HGI48_RS01710 0.18 -0.3
378,310 + HGI48_RS01710 0.37 -0.2
378,310 + HGI48_RS01710 0.37 -0.5
378,311 - HGI48_RS01710 0.37 -1.6
378,312 + HGI48_RS01710 0.37 -0.0
378,312 + HGI48_RS01710 0.37 +1.0
378,312 + HGI48_RS01710 0.37 -0.7
378,312 + HGI48_RS01710 0.37 -1.8
378,312 + HGI48_RS01710 0.37 -3.3
378,312 + HGI48_RS01710 0.37 +1.7
378,312 + HGI48_RS01710 0.37 -0.6
378,312 + HGI48_RS01710 0.37 -0.3
378,313 - HGI48_RS01710 0.37 -2.0
378,313 - HGI48_RS01710 0.37 -1.0
378,313 - HGI48_RS01710 0.37 -0.3
378,313 - HGI48_RS01710 0.37 -0.9
378,313 - HGI48_RS01710 0.37 -1.3
378,313 - HGI48_RS01710 0.37 -1.6
378,313 - HGI48_RS01710 0.37 +0.5
378,313 - HGI48_RS01710 0.37 -0.6
378,313 - -0.0
378,313 - HGI48_RS01710 0.37 -0.3
378,429 + HGI48_RS01710 0.47 -1.8
378,429 + HGI48_RS01710 0.47 +0.6
378,429 + HGI48_RS01710 0.47 -0.5
378,429 + HGI48_RS01710 0.47 +1.0
378,429 + +0.4
378,429 + HGI48_RS01710 0.47 +1.0
378,430 - HGI48_RS01710 0.47 -0.3
378,430 - HGI48_RS01710 0.47 -0.4
378,430 - HGI48_RS01710 0.47 +0.1
378,430 - HGI48_RS01710 0.47 -1.3
378,430 - HGI48_RS01710 0.47 +0.5
378,430 - HGI48_RS01710 0.47 -0.3
378,430 - HGI48_RS01710 0.47 -0.2
378,455 - HGI48_RS01710 0.49 -0.0
378,455 - HGI48_RS01710 0.49 +0.5
378,455 - HGI48_RS01710 0.49 +0.1

Or see this region's nucleotide sequence