Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01690 and HGI48_RS01695 are separated by 231 nucleotides HGI48_RS01695 and HGI48_RS01700 are separated by 231 nucleotides
HGI48_RS01690: HGI48_RS01690 - 2,5-didehydrogluconate reductase DkgA, at 373,580 to 374,425
_RS01690
HGI48_RS01695: HGI48_RS01695 - alcohol dehydrogenase, at 374,657 to 375,820
_RS01695
HGI48_RS01700: HGI48_RS01700 - AraC family transcriptional regulator, at 376,052 to 376,966
_RS01700
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.664 kb on + strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.665 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand at 373.839 kb on - strand, within HGI48_RS01690 at 374.079 kb on + strand at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.115 kb on + strand at 374.115 kb on + strand at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand at 374.139 kb on - strand, within HGI48_RS01690 at 374.139 kb on - strand, within HGI48_RS01690 at 374.386 kb on + strand at 374.386 kb on + strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.405 kb on - strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.528 kb on + strand at 374.528 kb on + strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.572 kb on + strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.591 kb on + strand at 374.591 kb on + strand at 374.592 kb on - strand at 374.592 kb on - strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.629 kb on - strand at 374.629 kb on - strand at 374.673 kb on + strand at 374.674 kb on - strand at 374.674 kb on - strand at 374.804 kb on + strand, within HGI48_RS01695 at 374.901 kb on + strand, within HGI48_RS01695 at 374.963 kb on - strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand at 375.149 kb on + strand, within HGI48_RS01695 at 375.149 kb on + strand, within HGI48_RS01695 at 375.150 kb on - strand, within HGI48_RS01695 at 375.213 kb on + strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.440 kb on + strand, within HGI48_RS01695 at 375.441 kb on - strand, within HGI48_RS01695 at 375.492 kb on + strand at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.493 kb on - strand at 375.493 kb on - strand, within HGI48_RS01695 at 375.493 kb on - strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.697 kb on + strand, within HGI48_RS01695 at 375.698 kb on - strand, within HGI48_RS01695 at 375.714 kb on + strand at 375.715 kb on - strand at 375.715 kb on - strand at 375.808 kb on + strand at 375.809 kb on - strand at 375.835 kb on + strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.843 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.913 kb on - strand at 376.049 kb on - strand at 376.049 kb on - strand at 376.049 kb on - strand at 376.080 kb on + strand at 376.081 kb on - strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.101 kb on - strand at 376.154 kb on + strand, within HGI48_RS01700 at 376.154 kb on + strand, within HGI48_RS01700 at 376.155 kb on - strand, within HGI48_RS01700 at 376.190 kb on + strand, within HGI48_RS01700 at 376.260 kb on - strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.279 kb on - strand at 376.279 kb on - strand, within HGI48_RS01700 at 376.279 kb on - strand, within HGI48_RS01700 at 376.279 kb on - strand, within HGI48_RS01700 at 376.555 kb on + strand, within HGI48_RS01700 at 376.556 kb on - strand, within HGI48_RS01700 at 376.560 kb on - strand, within HGI48_RS01700 at 376.560 kb on - strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.594 kb on - strand, within HGI48_RS01700 at 376.614 kb on - strand, within HGI48_RS01700 at 376.649 kb on + strand, within HGI48_RS01700 at 376.649 kb on + strand, within HGI48_RS01700 at 376.650 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.753 kb on + strand, within HGI48_RS01700 at 376.754 kb on - strand, within HGI48_RS01700 at 376.769 kb on + strand, within HGI48_RS01700 at 376.769 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 373,664 + +0.3 373,664 + -0.0 373,664 + +1.2 373,665 - HGI48_RS01690 0.10 -0.6 373,715 - HGI48_RS01690 0.16 +0.9 373,715 - +1.4 373,839 - HGI48_RS01690 0.31 -2.0 374,079 + +1.0 374,079 + HGI48_RS01690 0.59 -0.4 374,079 + HGI48_RS01690 0.59 +0.2 374,079 + HGI48_RS01690 0.59 -1.3 374,080 - HGI48_RS01690 0.59 -0.0 374,080 - HGI48_RS01690 0.59 -0.2 374,080 - HGI48_RS01690 0.59 +0.5 374,080 - HGI48_RS01690 0.59 -0.2 374,080 - HGI48_RS01690 0.59 -0.2 374,080 - HGI48_RS01690 0.59 -2.3 374,080 - HGI48_RS01690 0.59 +0.3 374,080 - HGI48_RS01690 0.59 -0.9 374,080 - HGI48_RS01690 0.59 -1.7 374,080 - HGI48_RS01690 0.59 -1.0 374,080 - HGI48_RS01690 0.59 -0.8 374,080 - HGI48_RS01690 0.59 -0.3 374,110 + HGI48_RS01690 0.63 +0.3 374,110 + HGI48_RS01690 0.63 -0.0 374,115 + -0.6 374,115 + -0.6 374,116 - HGI48_RS01690 0.63 -1.3 374,116 - HGI48_RS01690 0.63 -1.2 374,116 - -0.0 374,139 - HGI48_RS01690 0.66 -2.2 374,139 - HGI48_RS01690 0.66 -0.2 374,386 + +0.3 374,386 + +1.0 374,387 - +1.0 374,387 - -0.6 374,387 - +1.3 374,387 - +1.3 374,405 - +0.4 374,425 + -0.4 374,425 + -0.0 374,425 + -1.3 374,528 + -0.0 374,528 + -0.1 374,529 - -0.2 374,529 - -1.2 374,529 - +0.6 374,529 - -0.9 374,572 + +1.1 374,573 - +0.6 374,573 - -0.4 374,573 - +1.6 374,591 + +0.8 374,591 + -0.0 374,592 - +1.0 374,592 - +0.3 374,622 + -0.0 374,622 + +0.5 374,622 + +1.4 374,623 - -0.0 374,623 - -1.2 374,623 - -0.0 374,623 - +1.0 374,623 - -0.0 374,623 - +0.3 374,628 + +0.8 374,628 + -0.9 374,628 + +0.6 374,629 - -1.6 374,629 - -0.0 374,673 + -0.6 374,674 - -1.2 374,674 - -1.8 374,804 + HGI48_RS01695 0.13 +0.6 374,901 + HGI48_RS01695 0.21 -1.2 374,963 - HGI48_RS01695 0.26 -0.0 375,101 + HGI48_RS01695 0.38 -0.3 375,101 + HGI48_RS01695 0.38 -1.6 375,101 + HGI48_RS01695 0.38 -2.0 375,102 - HGI48_RS01695 0.38 +0.6 375,102 - HGI48_RS01695 0.38 -0.8 375,108 + HGI48_RS01695 0.39 -1.0 375,108 + HGI48_RS01695 0.39 -1.6 375,108 + HGI48_RS01695 0.39 -0.0 375,108 + -0.6 375,108 + HGI48_RS01695 0.39 -1.6 375,108 + HGI48_RS01695 0.39 -1.3 375,109 - HGI48_RS01695 0.39 -0.7 375,109 - HGI48_RS01695 0.39 +0.5 375,112 + HGI48_RS01695 0.39 -1.0 375,112 + +1.4 375,112 + HGI48_RS01695 0.39 -0.6 375,112 + HGI48_RS01695 0.39 -0.5 375,112 + HGI48_RS01695 0.39 +1.3 375,112 + HGI48_RS01695 0.39 -1.5 375,112 + HGI48_RS01695 0.39 -1.3 375,112 + HGI48_RS01695 0.39 -3.1 375,112 + HGI48_RS01695 0.39 +1.0 375,113 - HGI48_RS01695 0.39 -2.5 375,113 - HGI48_RS01695 0.39 -0.0 375,113 - HGI48_RS01695 0.39 -0.5 375,113 - HGI48_RS01695 0.39 +0.3 375,113 - HGI48_RS01695 0.39 -0.9 375,113 - HGI48_RS01695 0.39 +0.3 375,113 - HGI48_RS01695 0.39 +2.3 375,113 - +1.6 375,149 + HGI48_RS01695 0.42 -0.2 375,149 + HGI48_RS01695 0.42 +0.3 375,150 - HGI48_RS01695 0.42 -0.8 375,213 + HGI48_RS01695 0.48 -1.3 375,214 - HGI48_RS01695 0.48 -0.4 375,214 - HGI48_RS01695 0.48 -0.9 375,279 + HGI48_RS01695 0.53 +1.0 375,279 + HGI48_RS01695 0.53 +0.3 375,279 + HGI48_RS01695 0.53 +0.0 375,279 + HGI48_RS01695 0.53 +0.5 375,279 + HGI48_RS01695 0.53 +1.0 375,280 - HGI48_RS01695 0.54 -0.2 375,280 - HGI48_RS01695 0.54 -0.0 375,280 - HGI48_RS01695 0.54 -0.2 375,280 - HGI48_RS01695 0.54 -0.0 375,280 - HGI48_RS01695 0.54 -0.2 375,280 - HGI48_RS01695 0.54 -0.0 375,440 + HGI48_RS01695 0.67 +0.7 375,441 - HGI48_RS01695 0.67 +1.7 375,492 + +0.4 375,492 + HGI48_RS01695 0.72 -0.9 375,492 + HGI48_RS01695 0.72 -1.8 375,492 + HGI48_RS01695 0.72 -0.8 375,492 + HGI48_RS01695 0.72 +0.4 375,492 + HGI48_RS01695 0.72 +0.8 375,492 + HGI48_RS01695 0.72 +0.6 375,492 + HGI48_RS01695 0.72 +0.3 375,492 + HGI48_RS01695 0.72 -0.9 375,493 - +0.4 375,493 - HGI48_RS01695 0.72 -0.2 375,493 - HGI48_RS01695 0.72 +0.7 375,644 + HGI48_RS01695 0.85 -0.3 375,644 + HGI48_RS01695 0.85 -0.0 375,644 + -0.0 375,644 + HGI48_RS01695 0.85 -0.7 375,644 + HGI48_RS01695 0.85 +1.3 375,697 + HGI48_RS01695 0.89 +0.3 375,698 - HGI48_RS01695 0.89 -0.3 375,714 + +0.3 375,715 - -1.3 375,715 - -0.7 375,808 + +0.5 375,809 - -0.6 375,835 + -1.5 375,836 - -0.6 375,836 - -0.4 375,836 - -0.3 375,836 - +2.0 375,836 - +0.3 375,843 + +0.2 375,854 + +1.2 375,854 + +0.6 375,854 + +2.6 375,854 + -0.4 375,854 + -1.8 375,854 + -0.0 375,855 - -0.0 375,855 - -1.3 375,855 - +0.2 375,855 - -1.0 375,855 - -1.0 375,913 - -0.9 376,049 - +0.2 376,049 - -0.6 376,049 - -0.2 376,080 + +0.7 376,081 - +1.0 376,100 + +0.5 376,100 + +0.1 376,100 + +0.2 376,100 + -1.3 376,101 - -1.5 376,154 + HGI48_RS01700 0.11 +1.2 376,154 + HGI48_RS01700 0.11 +0.4 376,155 - HGI48_RS01700 0.11 +0.1 376,190 + HGI48_RS01700 0.15 -0.8 376,260 - HGI48_RS01700 0.23 -0.9 376,274 + HGI48_RS01700 0.24 +0.0 376,274 + HGI48_RS01700 0.24 +1.0 376,274 + HGI48_RS01700 0.24 -0.7 376,274 + HGI48_RS01700 0.24 -0.3 376,275 - HGI48_RS01700 0.24 -0.6 376,275 - HGI48_RS01700 0.24 +1.3 376,275 - HGI48_RS01700 0.24 +1.2 376,278 + HGI48_RS01700 0.25 -0.0 376,278 + HGI48_RS01700 0.25 +0.3 376,278 + -0.6 376,278 + HGI48_RS01700 0.25 +0.3 376,278 + HGI48_RS01700 0.25 +0.2 376,279 - -0.6 376,279 - HGI48_RS01700 0.25 +1.0 376,279 - HGI48_RS01700 0.25 -0.8 376,279 - HGI48_RS01700 0.25 +0.6 376,555 + HGI48_RS01700 0.55 -0.6 376,556 - HGI48_RS01700 0.55 +0.7 376,560 - HGI48_RS01700 0.56 +0.3 376,560 - HGI48_RS01700 0.56 +0.9 376,566 + HGI48_RS01700 0.56 -0.8 376,566 + HGI48_RS01700 0.56 -1.1 376,566 + HGI48_RS01700 0.56 +0.6 376,566 + HGI48_RS01700 0.56 -2.0 376,566 + HGI48_RS01700 0.56 -2.2 376,567 - HGI48_RS01700 0.56 -1.5 376,567 - HGI48_RS01700 0.56 +0.5 376,567 - HGI48_RS01700 0.56 -1.6 376,567 - HGI48_RS01700 0.56 +1.3 376,567 - HGI48_RS01700 0.56 -0.6 376,567 - HGI48_RS01700 0.56 -0.4 376,567 - HGI48_RS01700 0.56 -0.0 376,567 - HGI48_RS01700 0.56 +0.4 376,567 - HGI48_RS01700 0.56 -1.0 376,567 - HGI48_RS01700 0.56 -0.3 376,594 - HGI48_RS01700 0.59 +1.0 376,614 - HGI48_RS01700 0.61 -2.3 376,649 + HGI48_RS01700 0.65 -0.6 376,649 + HGI48_RS01700 0.65 -0.4 376,650 - HGI48_RS01700 0.65 -1.3 376,733 - HGI48_RS01700 0.74 +1.3 376,733 - HGI48_RS01700 0.74 -0.2 376,733 - HGI48_RS01700 0.74 -0.7 376,753 + HGI48_RS01700 0.77 -0.0 376,754 - HGI48_RS01700 0.77 -1.0 376,769 + HGI48_RS01700 0.78 +0.1 376,769 + HGI48_RS01700 0.78 -1.3 376,773 + HGI48_RS01700 0.79 -0.0 376,773 + HGI48_RS01700 0.79 +0.1 376,773 + +0.4 376,773 + HGI48_RS01700 0.79 +0.5 376,773 + HGI48_RS01700 0.79 -2.3 376,774 - HGI48_RS01700 0.79 +0.4 376,774 - HGI48_RS01700 0.79 +0.4 376,774 - HGI48_RS01700 0.79 -0.0 376,774 - HGI48_RS01700 0.79 -1.0 376,774 - HGI48_RS01700 0.79 -1.8 376,774 - HGI48_RS01700 0.79 -1.0 376,774 - HGI48_RS01700 0.79 +0.7 376,774 - HGI48_RS01700 0.79 -0.0
Or see this region's nucleotide sequence