Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01545 and HGI48_RS01550 are separated by 4 nucleotides HGI48_RS01550 and HGI48_RS01555 are separated by 98 nucleotides HGI48_RS01555 and HGI48_RS01560 are separated by 9 nucleotides
HGI48_RS01545: HGI48_RS01545 - stringent starvation protein A, at 337,770 to 338,411
_RS01545
HGI48_RS01550: HGI48_RS01550 - ClpXP protease specificity-enhancing factor, at 338,416 to 338,913
_RS01550
HGI48_RS01555: HGI48_RS01555 - glutamate synthase small subunit, at 339,012 to 340,430
_RS01555
HGI48_RS01560: HGI48_RS01560 - glutamate synthase large subunit, at 340,440 to 344,900
_RS01560
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.101 kb on - strand at 338.211 kb on + strand, within HGI48_RS01545 at 338.247 kb on + strand, within HGI48_RS01545 at 338.247 kb on + strand, within HGI48_RS01545 at 338.247 kb on + strand, within HGI48_RS01545 at 338.248 kb on - strand, within HGI48_RS01545 at 338.325 kb on + strand, within HGI48_RS01545 at 338.326 kb on - strand, within HGI48_RS01545 at 338.326 kb on - strand at 338.326 kb on - strand, within HGI48_RS01545 at 338.410 kb on - strand at 338.449 kb on + strand at 338.450 kb on - strand at 338.450 kb on - strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.457 kb on - strand at 338.457 kb on - strand at 338.467 kb on + strand, within HGI48_RS01550 at 338.467 kb on + strand, within HGI48_RS01550 at 338.467 kb on + strand, within HGI48_RS01550 at 338.468 kb on - strand, within HGI48_RS01550 at 338.468 kb on - strand, within HGI48_RS01550 at 338.468 kb on - strand, within HGI48_RS01550 at 338.468 kb on - strand, within HGI48_RS01550 at 338.468 kb on - strand, within HGI48_RS01550 at 338.573 kb on + strand, within HGI48_RS01550 at 338.573 kb on + strand, within HGI48_RS01550 at 338.573 kb on + strand, within HGI48_RS01550 at 338.577 kb on + strand, within HGI48_RS01550 at 338.578 kb on - strand, within HGI48_RS01550 at 338.578 kb on - strand, within HGI48_RS01550 at 338.625 kb on - strand, within HGI48_RS01550 at 338.695 kb on + strand, within HGI48_RS01550 at 338.696 kb on - strand, within HGI48_RS01550 at 338.696 kb on - strand, within HGI48_RS01550 at 338.911 kb on + strand at 338.911 kb on + strand at 339.014 kb on - strand at 339.025 kb on + strand at 339.025 kb on + strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.026 kb on - strand at 339.345 kb on + strand, within HGI48_RS01555 at 339.345 kb on + strand, within HGI48_RS01555 at 339.345 kb on + strand, within HGI48_RS01555 at 339.346 kb on - strand, within HGI48_RS01555 at 339.359 kb on + strand, within HGI48_RS01555 at 339.360 kb on - strand, within HGI48_RS01555 at 339.490 kb on - strand, within HGI48_RS01555 at 339.490 kb on - strand, within HGI48_RS01555 at 339.518 kb on + strand, within HGI48_RS01555 at 339.518 kb on + strand at 339.586 kb on + strand, within HGI48_RS01555 at 339.586 kb on + strand, within HGI48_RS01555 at 339.586 kb on + strand, within HGI48_RS01555 at 339.587 kb on - strand, within HGI48_RS01555 at 339.587 kb on - strand, within HGI48_RS01555 at 339.658 kb on + strand, within HGI48_RS01555 at 339.658 kb on + strand, within HGI48_RS01555 at 339.658 kb on + strand, within HGI48_RS01555 at 339.659 kb on - strand, within HGI48_RS01555 at 339.659 kb on - strand, within HGI48_RS01555 at 339.659 kb on - strand, within HGI48_RS01555 at 339.659 kb on - strand, within HGI48_RS01555 at 339.706 kb on + strand, within HGI48_RS01555 at 339.706 kb on + strand, within HGI48_RS01555 at 339.706 kb on + strand, within HGI48_RS01555 at 339.706 kb on + strand, within HGI48_RS01555 at 339.707 kb on - strand at 339.707 kb on - strand at 339.736 kb on + strand, within HGI48_RS01555 at 339.736 kb on + strand, within HGI48_RS01555 at 339.736 kb on + strand, within HGI48_RS01555 at 339.737 kb on - strand, within HGI48_RS01555 at 339.785 kb on + strand at 339.786 kb on - strand, within HGI48_RS01555 at 339.786 kb on - strand, within HGI48_RS01555 at 339.907 kb on + strand, within HGI48_RS01555 at 339.908 kb on - strand, within HGI48_RS01555 at 339.908 kb on - strand, within HGI48_RS01555 at 340.057 kb on + strand, within HGI48_RS01555 at 340.058 kb on - strand, within HGI48_RS01555 at 340.058 kb on - strand, within HGI48_RS01555 at 340.058 kb on - strand, within HGI48_RS01555 at 340.058 kb on - strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.240 kb on + strand, within HGI48_RS01555 at 340.241 kb on - strand at 340.241 kb on - strand, within HGI48_RS01555 at 340.241 kb on - strand, within HGI48_RS01555 at 340.241 kb on - strand, within HGI48_RS01555 at 340.241 kb on - strand, within HGI48_RS01555 at 340.241 kb on - strand, within HGI48_RS01555 at 340.241 kb on - strand, within HGI48_RS01555 at 340.336 kb on + strand at 340.358 kb on + strand at 340.398 kb on + strand at 340.398 kb on + strand at 340.398 kb on + strand at 340.399 kb on - strand at 340.399 kb on - strand at 340.415 kb on - strand at 340.441 kb on + strand at 340.441 kb on + strand at 340.442 kb on - strand at 340.442 kb on - strand at 340.478 kb on + strand at 340.478 kb on + strand at 340.479 kb on - strand at 340.479 kb on - strand at 340.521 kb on + strand at 340.521 kb on + strand at 340.521 kb on + strand at 340.717 kb on + strand at 340.717 kb on + strand at 340.717 kb on + strand at 340.718 kb on - strand at 340.718 kb on - strand at 340.718 kb on - strand at 340.773 kb on - strand at 340.795 kb on + strand at 340.795 kb on + strand at 340.795 kb on + strand at 340.796 kb on - strand at 340.796 kb on - strand at 340.920 kb on - strand, within HGI48_RS01560 at 341.011 kb on + strand, within HGI48_RS01560 at 341.095 kb on + strand, within HGI48_RS01560 at 341.096 kb on - strand, within HGI48_RS01560 at 341.096 kb on - strand, within HGI48_RS01560 at 341.105 kb on + strand, within HGI48_RS01560 at 341.105 kb on + strand at 341.200 kb on + strand, within HGI48_RS01560 at 341.200 kb on + strand, within HGI48_RS01560 at 341.201 kb on - strand, within HGI48_RS01560 at 341.303 kb on - strand, within HGI48_RS01560 at 341.303 kb on - strand, within HGI48_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 338,101 - -0.0 338,211 + HGI48_RS01545 0.69 +0.4 338,247 + HGI48_RS01545 0.74 -0.8 338,247 + HGI48_RS01545 0.74 -0.6 338,247 + HGI48_RS01545 0.74 -0.0 338,248 - HGI48_RS01545 0.74 -1.0 338,325 + HGI48_RS01545 0.86 +0.2 338,326 - HGI48_RS01545 0.87 +0.2 338,326 - +1.0 338,326 - HGI48_RS01545 0.87 -0.6 338,410 - -0.6 338,449 + +0.6 338,450 - -0.6 338,450 - +0.6 338,453 + -1.0 338,453 + +0.1 338,453 + +0.3 338,454 - +1.6 338,454 - +1.0 338,457 - +1.3 338,457 - -0.2 338,467 + HGI48_RS01550 0.10 -0.0 338,467 + HGI48_RS01550 0.10 +0.4 338,467 + HGI48_RS01550 0.10 +0.8 338,468 - HGI48_RS01550 0.10 -0.7 338,468 - HGI48_RS01550 0.10 +0.3 338,468 - HGI48_RS01550 0.10 -1.3 338,468 - HGI48_RS01550 0.10 +0.2 338,468 - HGI48_RS01550 0.10 +0.4 338,573 + HGI48_RS01550 0.32 +0.3 338,573 + HGI48_RS01550 0.32 +1.1 338,573 + HGI48_RS01550 0.32 -0.6 338,577 + HGI48_RS01550 0.32 +0.0 338,578 - HGI48_RS01550 0.33 +0.9 338,578 - HGI48_RS01550 0.33 -2.0 338,625 - HGI48_RS01550 0.42 -0.0 338,695 + HGI48_RS01550 0.56 -1.2 338,696 - HGI48_RS01550 0.56 +0.8 338,696 - HGI48_RS01550 0.56 -0.4 338,911 + -1.0 338,911 + -1.0 339,014 - -0.6 339,025 + -0.3 339,025 + -0.6 339,026 - -1.1 339,026 - -1.8 339,026 - +0.6 339,026 - -0.1 339,026 - -0.2 339,026 - +0.7 339,026 - +1.0 339,345 + HGI48_RS01555 0.23 -0.2 339,345 + HGI48_RS01555 0.23 -1.0 339,345 + HGI48_RS01555 0.23 +1.3 339,346 - HGI48_RS01555 0.24 +0.6 339,359 + HGI48_RS01555 0.24 -1.8 339,360 - HGI48_RS01555 0.25 -1.2 339,490 - HGI48_RS01555 0.34 -0.2 339,490 - HGI48_RS01555 0.34 +0.8 339,518 + HGI48_RS01555 0.36 +0.4 339,518 + +1.6 339,586 + HGI48_RS01555 0.40 -0.4 339,586 + HGI48_RS01555 0.40 -0.0 339,586 + HGI48_RS01555 0.40 +0.9 339,587 - HGI48_RS01555 0.41 -1.6 339,587 - HGI48_RS01555 0.41 +0.2 339,658 + HGI48_RS01555 0.46 +1.0 339,658 + HGI48_RS01555 0.46 -0.6 339,658 + HGI48_RS01555 0.46 -0.0 339,659 - HGI48_RS01555 0.46 -0.0 339,659 - HGI48_RS01555 0.46 +1.0 339,659 - HGI48_RS01555 0.46 +0.6 339,659 - HGI48_RS01555 0.46 -0.0 339,706 + HGI48_RS01555 0.49 +1.0 339,706 + HGI48_RS01555 0.49 -0.8 339,706 + HGI48_RS01555 0.49 -0.6 339,706 + HGI48_RS01555 0.49 +1.0 339,707 - +1.4 339,707 - -0.6 339,736 + HGI48_RS01555 0.51 -0.0 339,736 + HGI48_RS01555 0.51 +0.2 339,736 + HGI48_RS01555 0.51 -2.0 339,737 - HGI48_RS01555 0.51 -0.9 339,785 + +1.4 339,786 - HGI48_RS01555 0.55 +0.0 339,786 - HGI48_RS01555 0.55 -0.0 339,907 + HGI48_RS01555 0.63 +0.6 339,908 - HGI48_RS01555 0.63 -1.2 339,908 - HGI48_RS01555 0.63 +1.3 340,057 + HGI48_RS01555 0.74 -0.0 340,058 - HGI48_RS01555 0.74 -1.8 340,058 - HGI48_RS01555 0.74 +0.6 340,058 - HGI48_RS01555 0.74 -0.0 340,058 - HGI48_RS01555 0.74 +0.3 340,240 + HGI48_RS01555 0.87 -0.3 340,240 + HGI48_RS01555 0.87 +0.5 340,240 + HGI48_RS01555 0.87 -1.0 340,240 + HGI48_RS01555 0.87 -0.1 340,240 + HGI48_RS01555 0.87 -1.8 340,240 + HGI48_RS01555 0.87 -0.8 340,240 + HGI48_RS01555 0.87 +0.7 340,240 + HGI48_RS01555 0.87 -0.0 340,240 + HGI48_RS01555 0.87 +1.0 340,241 - +1.6 340,241 - HGI48_RS01555 0.87 +0.4 340,241 - HGI48_RS01555 0.87 -0.6 340,241 - HGI48_RS01555 0.87 +0.3 340,241 - HGI48_RS01555 0.87 -0.2 340,241 - HGI48_RS01555 0.87 -0.5 340,241 - HGI48_RS01555 0.87 -0.4 340,336 + +1.0 340,358 + +1.6 340,398 + -1.5 340,398 + -0.3 340,398 + -0.6 340,399 - -0.0 340,399 - +0.5 340,415 - -0.7 340,441 + +0.3 340,441 + -0.0 340,442 - -0.2 340,442 - -1.0 340,478 + -0.6 340,478 + +1.7 340,479 - -0.0 340,479 - +0.4 340,521 + +0.2 340,521 + -0.5 340,521 + -0.6 340,717 + +0.5 340,717 + -0.0 340,717 + +1.0 340,718 - -0.0 340,718 - -0.6 340,718 - -0.0 340,773 - -1.6 340,795 + +0.6 340,795 + -1.0 340,795 + +0.4 340,796 - -0.9 340,796 - +1.0 340,920 - HGI48_RS01560 0.11 -0.8 341,011 + HGI48_RS01560 0.13 -1.0 341,095 + HGI48_RS01560 0.15 +2.0 341,096 - HGI48_RS01560 0.15 -0.2 341,096 - HGI48_RS01560 0.15 -1.2 341,105 + HGI48_RS01560 0.15 -1.6 341,105 + -0.0 341,200 + HGI48_RS01560 0.17 -0.0 341,200 + HGI48_RS01560 0.17 -2.3 341,201 - HGI48_RS01560 0.17 +0.2 341,303 - HGI48_RS01560 0.19 -0.2 341,303 - HGI48_RS01560 0.19 +1.2
Or see this region's nucleotide sequence