Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01510

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01495 and HGI48_RS01500 overlap by 8 nucleotidesHGI48_RS01500 and HGI48_RS01505 are separated by 133 nucleotidesHGI48_RS01505 and HGI48_RS01510 are separated by 53 nucleotidesHGI48_RS01510 and HGI48_RS01515 are separated by 54 nucleotides HGI48_RS01495: HGI48_RS01495 - phospholipid-binding protein MlaC, at 329,121 to 329,774 _RS01495 HGI48_RS01500: HGI48_RS01500 - lipid asymmetry maintenance protein MlaB, at 329,767 to 330,069 _RS01500 HGI48_RS01505: HGI48_RS01505 - BolA family iron metabolism protein IbaG, at 330,203 to 330,457 _RS01505 HGI48_RS01510: HGI48_RS01510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 330,511 to 331,773 _RS01510 HGI48_RS01515: HGI48_RS01515 - outer membrane-stress sensor serine endopeptidase DegS, at 331,828 to 332,889 _RS01515 Position (kb) 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.543 kb on + strandat 329.543 kb on + strand, within HGI48_RS01495at 329.544 kb on - strand, within HGI48_RS01495at 329.544 kb on - strand, within HGI48_RS01495at 329.625 kb on + strand, within HGI48_RS01495at 329.625 kb on + strand, within HGI48_RS01495at 329.625 kb on + strandat 329.626 kb on - strand, within HGI48_RS01495at 329.626 kb on - strand, within HGI48_RS01495at 329.717 kb on + strandat 329.717 kb on + strandat 329.717 kb on + strandat 329.717 kb on + strandat 329.718 kb on - strandat 329.835 kb on + strand, within HGI48_RS01500at 329.881 kb on - strand, within HGI48_RS01500at 329.950 kb on + strand, within HGI48_RS01500at 330.026 kb on + strand, within HGI48_RS01500at 330.026 kb on + strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.039 kb on + strandat 330.155 kb on + strandat 330.155 kb on + strandat 330.155 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.172 kb on + strandat 330.172 kb on + strandat 330.300 kb on + strand, within HGI48_RS01505at 330.300 kb on + strand, within HGI48_RS01505at 330.300 kb on + strand, within HGI48_RS01505at 330.368 kb on + strand, within HGI48_RS01505at 330.368 kb on + strandat 330.370 kb on + strandat 330.410 kb on + strandat 330.410 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.455 kb on + strandat 330.455 kb on + strandat 331.797 kb on - strandat 331.842 kb on - strandat 331.851 kb on + strandat 331.851 kb on + strandat 331.852 kb on - strandat 331.857 kb on + strandat 331.867 kb on + strandat 331.868 kb on - strandat 331.868 kb on - strandat 331.868 kb on - strandat 331.868 kb on - strandat 331.868 kb on - strandat 331.878 kb on + strandat 331.879 kb on - strandat 331.946 kb on - strand, within HGI48_RS01515at 332.010 kb on + strand, within HGI48_RS01515at 332.056 kb on + strand, within HGI48_RS01515at 332.057 kb on - strandat 332.118 kb on + strand, within HGI48_RS01515at 332.119 kb on - strand, within HGI48_RS01515at 332.120 kb on + strand, within HGI48_RS01515at 332.120 kb on + strand, within HGI48_RS01515at 332.120 kb on + strand, within HGI48_RS01515at 332.121 kb on - strand, within HGI48_RS01515at 332.121 kb on - strand, within HGI48_RS01515at 332.121 kb on - strand, within HGI48_RS01515at 332.121 kb on - strand, within HGI48_RS01515at 332.121 kb on - strand, within HGI48_RS01515at 332.161 kb on + strand, within HGI48_RS01515at 332.161 kb on + strand, within HGI48_RS01515at 332.161 kb on + strand, within HGI48_RS01515at 332.161 kb on + strand, within HGI48_RS01515at 332.161 kb on + strand, within HGI48_RS01515at 332.162 kb on - strand, within HGI48_RS01515at 332.162 kb on - strand, within HGI48_RS01515at 332.162 kb on - strand, within HGI48_RS01515at 332.162 kb on - strand, within HGI48_RS01515at 332.162 kb on - strand, within HGI48_RS01515at 332.229 kb on + strand, within HGI48_RS01515at 332.408 kb on + strand, within HGI48_RS01515at 332.408 kb on + strand, within HGI48_RS01515at 332.408 kb on + strand, within HGI48_RS01515at 332.408 kb on + strand, within HGI48_RS01515at 332.503 kb on + strand, within HGI48_RS01515at 332.503 kb on + strand, within HGI48_RS01515at 332.533 kb on + strand, within HGI48_RS01515at 332.534 kb on - strand, within HGI48_RS01515at 332.607 kb on + strand, within HGI48_RS01515at 332.608 kb on - strand, within HGI48_RS01515at 332.608 kb on - strand, within HGI48_RS01515at 332.621 kb on + strand, within HGI48_RS01515at 332.621 kb on + strand, within HGI48_RS01515at 332.621 kb on + strand, within HGI48_RS01515at 332.622 kb on - strand, within HGI48_RS01515at 332.622 kb on - strand, within HGI48_RS01515at 332.622 kb on - strandat 332.622 kb on - strand, within HGI48_RS01515at 332.622 kb on - strand, within HGI48_RS01515at 332.631 kb on + strand, within HGI48_RS01515at 332.632 kb on - strand, within HGI48_RS01515at 332.705 kb on + strand, within HGI48_RS01515at 332.705 kb on + strand, within HGI48_RS01515at 332.705 kb on + strand, within HGI48_RS01515at 332.706 kb on - strand, within HGI48_RS01515at 332.706 kb on - strand, within HGI48_RS01515at 332.707 kb on + strand, within HGI48_RS01515at 332.707 kb on + strand, within HGI48_RS01515at 332.707 kb on + strand, within HGI48_RS01515at 332.707 kb on + strand, within HGI48_RS01515at 332.707 kb on + strandat 332.707 kb on + strand, within HGI48_RS01515at 332.707 kb on + strand, within HGI48_RS01515at 332.708 kb on - strand, within HGI48_RS01515at 332.708 kb on - strand, within HGI48_RS01515at 332.708 kb on - strandat 332.737 kb on + strand, within HGI48_RS01515at 332.747 kb on + strand, within HGI48_RS01515at 332.748 kb on - strand, within HGI48_RS01515at 332.750 kb on + strandat 332.750 kb on + strand, within HGI48_RS01515at 332.750 kb on + strand, within HGI48_RS01515at 332.751 kb on - strand, within HGI48_RS01515

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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329,543 + +2.0
329,543 + HGI48_RS01495 0.65 +0.7
329,544 - HGI48_RS01495 0.65 +0.6
329,544 - HGI48_RS01495 0.65 -0.6
329,625 + HGI48_RS01495 0.77 -2.3
329,625 + HGI48_RS01495 0.77 -0.4
329,625 + -0.6
329,626 - HGI48_RS01495 0.77 -0.6
329,626 - HGI48_RS01495 0.77 +0.1
329,717 + +1.3
329,717 + +1.7
329,717 + -1.8
329,717 + -3.3
329,718 - -0.4
329,835 + HGI48_RS01500 0.22 -2.0
329,881 - HGI48_RS01500 0.38 -1.8
329,950 + HGI48_RS01500 0.60 +0.6
330,026 + HGI48_RS01500 0.85 +0.8
330,026 + HGI48_RS01500 0.85 -1.6
330,027 - HGI48_RS01500 0.86 -1.0
330,027 - HGI48_RS01500 0.86 +0.6
330,027 - HGI48_RS01500 0.86 -0.4
330,028 + HGI48_RS01500 0.86 +0.0
330,028 + HGI48_RS01500 0.86 -3.0
330,028 + HGI48_RS01500 0.86 -0.8
330,028 + HGI48_RS01500 0.86 -2.3
330,028 + HGI48_RS01500 0.86 +1.3
330,029 - HGI48_RS01500 0.86 -1.0
330,029 - HGI48_RS01500 0.86 -2.8
330,029 - HGI48_RS01500 0.86 -1.6
330,029 - HGI48_RS01500 0.86 -0.3
330,030 + HGI48_RS01500 0.87 +0.4
330,030 + HGI48_RS01500 0.87 -1.6
330,030 + HGI48_RS01500 0.87 +0.8
330,031 - HGI48_RS01500 0.87 +0.7
330,031 - HGI48_RS01500 0.87 -1.7
330,031 - HGI48_RS01500 0.87 -0.7
330,031 - HGI48_RS01500 0.87 +1.5
330,039 + -1.5
330,155 + -1.3
330,155 + -2.0
330,155 + -0.2
330,160 + +0.0
330,160 + +0.7
330,160 + -0.1
330,160 + +0.0
330,160 + +0.7
330,172 + +1.0
330,172 + -0.5
330,300 + HGI48_RS01505 0.38 +0.1
330,300 + HGI48_RS01505 0.38 +0.0
330,300 + HGI48_RS01505 0.38 -1.6
330,368 + HGI48_RS01505 0.65 -0.8
330,368 + +1.4
330,370 + -0.6
330,410 + +1.0
330,410 + HGI48_RS01505 0.81 -0.8
330,412 + HGI48_RS01505 0.82 -0.7
330,412 + HGI48_RS01505 0.82 +0.2
330,412 + HGI48_RS01505 0.82 -1.6
330,412 + HGI48_RS01505 0.82 -0.6
330,412 + HGI48_RS01505 0.82 +0.6
330,455 + +0.4
330,455 + +0.6
331,797 - +0.0
331,842 - -1.1
331,851 + -0.7
331,851 + +1.0
331,852 - -0.1
331,857 + -1.0
331,867 + -1.8
331,868 - -1.2
331,868 - +0.3
331,868 - +0.2
331,868 - +0.9
331,868 - -0.5
331,878 + -1.0
331,879 - -0.2
331,946 - HGI48_RS01515 0.11 +0.4
332,010 + HGI48_RS01515 0.17 +1.0
332,056 + HGI48_RS01515 0.21 -1.0
332,057 - +2.0
332,118 + HGI48_RS01515 0.27 -0.1
332,119 - HGI48_RS01515 0.27 -0.9
332,120 + HGI48_RS01515 0.27 -0.3
332,120 + HGI48_RS01515 0.27 -1.3
332,120 + HGI48_RS01515 0.27 -2.0
332,121 - HGI48_RS01515 0.28 +1.2
332,121 - HGI48_RS01515 0.28 -0.6
332,121 - HGI48_RS01515 0.28 -0.2
332,121 - HGI48_RS01515 0.28 -1.8
332,121 - HGI48_RS01515 0.28 -1.0
332,161 + HGI48_RS01515 0.31 +0.2
332,161 + HGI48_RS01515 0.31 -0.9
332,161 + HGI48_RS01515 0.31 -0.9
332,161 + HGI48_RS01515 0.31 -1.8
332,161 + HGI48_RS01515 0.31 +0.6
332,162 - HGI48_RS01515 0.31 -1.1
332,162 - HGI48_RS01515 0.31 -0.6
332,162 - HGI48_RS01515 0.31 -0.3
332,162 - HGI48_RS01515 0.31 -1.0
332,162 - HGI48_RS01515 0.31 -0.6
332,229 + HGI48_RS01515 0.38 -0.5
332,408 + HGI48_RS01515 0.55 -1.7
332,408 + HGI48_RS01515 0.55 +0.7
332,408 + HGI48_RS01515 0.55 +0.3
332,408 + HGI48_RS01515 0.55 -2.6
332,503 + HGI48_RS01515 0.64 -0.7
332,503 + HGI48_RS01515 0.64 -0.1
332,533 + HGI48_RS01515 0.66 +0.6
332,534 - HGI48_RS01515 0.66 -0.2
332,607 + HGI48_RS01515 0.73 +0.7
332,608 - HGI48_RS01515 0.73 -0.6
332,608 - HGI48_RS01515 0.73 -0.4
332,621 + HGI48_RS01515 0.75 -0.3
332,621 + HGI48_RS01515 0.75 -0.8
332,621 + HGI48_RS01515 0.75 +0.5
332,622 - HGI48_RS01515 0.75 -0.7
332,622 - HGI48_RS01515 0.75 +0.0
332,622 - -0.6
332,622 - HGI48_RS01515 0.75 +0.0
332,622 - HGI48_RS01515 0.75 +1.3
332,631 + HGI48_RS01515 0.76 +0.3
332,632 - HGI48_RS01515 0.76 +0.5
332,705 + HGI48_RS01515 0.83 -1.0
332,705 + HGI48_RS01515 0.83 -0.2
332,705 + HGI48_RS01515 0.83 -0.4
332,706 - HGI48_RS01515 0.83 -0.4
332,706 - HGI48_RS01515 0.83 -1.6
332,707 + HGI48_RS01515 0.83 -0.3
332,707 + HGI48_RS01515 0.83 +0.0
332,707 + HGI48_RS01515 0.83 +0.2
332,707 + HGI48_RS01515 0.83 +0.7
332,707 + +1.0
332,707 + HGI48_RS01515 0.83 -0.8
332,707 + HGI48_RS01515 0.83 -0.5
332,708 - HGI48_RS01515 0.83 -0.6
332,708 - HGI48_RS01515 0.83 +0.0
332,708 - +1.0
332,737 + HGI48_RS01515 0.86 +0.1
332,747 + HGI48_RS01515 0.87 -0.8
332,748 - HGI48_RS01515 0.87 -0.7
332,750 + +1.4
332,750 + HGI48_RS01515 0.87 +0.0
332,750 + HGI48_RS01515 0.87 +0.3
332,751 - HGI48_RS01515 0.87 -0.2

Or see this region's nucleotide sequence