Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01425 and HGI48_RS01430 overlap by 4 nucleotides HGI48_RS01430 and HGI48_RS01435 are separated by 145 nucleotides HGI48_RS01435 and HGI48_RS01440 are separated by 92 nucleotides HGI48_RS01440 and HGI48_RS01445 are separated by 24 nucleotides
HGI48_RS01425: HGI48_RS01425 - PTS phosphocarrier protein NPr, at 318,513 to 318,785
_RS01425
HGI48_RS01430: HGI48_RS01430 - RNase adapter RapZ, at 318,782 to 319,636
_RS01430
HGI48_RS01435: HGI48_RS01435 - PTS IIA-like nitrogen regulatory protein PtsN, at 319,782 to 320,270
_RS01435
HGI48_RS01440: HGI48_RS01440 - ribosome hibernation promoting factor, at 320,363 to 320,650
_RS01440
HGI48_RS01445: HGI48_RS01445 - RNA polymerase factor sigma-54, at 320,675 to 322,108
_RS01445
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 318.870 kb on + strand at 318.871 kb on - strand, within HGI48_RS01430 at 318.914 kb on - strand, within HGI48_RS01430 at 318.914 kb on - strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.978 kb on + strand, within HGI48_RS01430 at 318.978 kb on + strand at 318.979 kb on - strand, within HGI48_RS01430 at 318.979 kb on - strand, within HGI48_RS01430 at 318.979 kb on - strand, within HGI48_RS01430 at 319.101 kb on + strand at 319.101 kb on + strand, within HGI48_RS01430 at 319.101 kb on + strand, within HGI48_RS01430 at 319.153 kb on + strand, within HGI48_RS01430 at 319.557 kb on + strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.590 kb on - strand at 319.684 kb on + strand at 319.685 kb on - strand at 319.685 kb on - strand at 319.741 kb on + strand at 319.742 kb on - strand at 319.742 kb on - strand at 319.904 kb on + strand at 319.904 kb on + strand, within HGI48_RS01435 at 319.904 kb on + strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.919 kb on + strand, within HGI48_RS01435 at 319.920 kb on - strand at 319.953 kb on + strand, within HGI48_RS01435 at 320.034 kb on - strand, within HGI48_RS01435 at 320.220 kb on - strand, within HGI48_RS01435 at 320.244 kb on - strand at 320.273 kb on + strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.321 kb on + strand at 320.322 kb on - strand at 320.322 kb on - strand at 320.386 kb on + strand at 320.387 kb on - strand at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand at 320.440 kb on - strand, within HGI48_RS01440 at 320.440 kb on - strand, within HGI48_RS01440 at 320.443 kb on + strand, within HGI48_RS01440 at 320.539 kb on - strand, within HGI48_RS01440 at 320.551 kb on + strand, within HGI48_RS01440 at 320.689 kb on + strand at 320.711 kb on - strand at 320.907 kb on + strand, within HGI48_RS01445 at 321.017 kb on - strand at 321.202 kb on - strand, within HGI48_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 318,870 + +0.4 318,871 - HGI48_RS01430 0.10 -1.6 318,914 - HGI48_RS01430 0.15 +0.3 318,914 - HGI48_RS01430 0.15 -1.0 318,918 + HGI48_RS01430 0.16 -0.7 318,918 + HGI48_RS01430 0.16 -0.5 318,918 + HGI48_RS01430 0.16 -0.2 318,919 - HGI48_RS01430 0.16 -2.5 318,919 - HGI48_RS01430 0.16 -1.0 318,919 - HGI48_RS01430 0.16 -0.6 318,978 + HGI48_RS01430 0.23 -0.3 318,978 + +2.0 318,979 - HGI48_RS01430 0.23 +0.7 318,979 - HGI48_RS01430 0.23 +1.3 318,979 - HGI48_RS01430 0.23 -1.6 319,101 + +0.4 319,101 + HGI48_RS01430 0.37 +1.0 319,101 + HGI48_RS01430 0.37 +1.2 319,153 + HGI48_RS01430 0.43 -0.6 319,557 + -1.1 319,558 - -1.0 319,558 - -1.0 319,558 - +0.4 319,558 - -1.0 319,590 - +0.2 319,684 + +0.0 319,685 - +0.0 319,685 - +0.7 319,741 + -0.2 319,742 - +0.4 319,742 - -1.0 319,904 + +0.0 319,904 + HGI48_RS01435 0.25 +0.9 319,904 + HGI48_RS01435 0.25 -0.8 319,905 - HGI48_RS01435 0.25 +1.7 319,905 - HGI48_RS01435 0.25 -1.8 319,905 - HGI48_RS01435 0.25 +0.0 319,905 - HGI48_RS01435 0.25 +1.2 319,905 - HGI48_RS01435 0.25 -1.0 319,905 - HGI48_RS01435 0.25 -0.2 319,909 - HGI48_RS01435 0.26 -0.8 319,909 - HGI48_RS01435 0.26 -0.3 319,909 - HGI48_RS01435 0.26 -1.5 319,909 - HGI48_RS01435 0.26 -2.5 319,909 - HGI48_RS01435 0.26 -1.9 319,919 + HGI48_RS01435 0.28 -1.8 319,920 - +1.0 319,953 + HGI48_RS01435 0.35 -0.9 320,034 - HGI48_RS01435 0.52 -1.0 320,220 - HGI48_RS01435 0.90 +0.4 320,244 - -1.3 320,273 + +0.6 320,274 - +2.0 320,274 - -1.1 320,274 - +0.7 320,274 - -0.3 320,321 + +0.1 320,322 - -0.6 320,322 - +0.6 320,386 + -0.1 320,387 - -0.4 320,439 + HGI48_RS01440 0.26 +0.7 320,439 + HGI48_RS01440 0.26 +0.6 320,439 + +1.6 320,440 - HGI48_RS01440 0.27 -1.2 320,440 - HGI48_RS01440 0.27 +1.2 320,443 + HGI48_RS01440 0.28 +0.4 320,539 - HGI48_RS01440 0.61 -0.0 320,551 + HGI48_RS01440 0.65 -2.2 320,689 + -0.6 320,711 - -0.6 320,907 + HGI48_RS01445 0.16 -2.3 321,017 - +0.0 321,202 - HGI48_RS01445 0.37 +1.0
Or see this region's nucleotide sequence