Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01345 and HGI48_RS01350 are separated by 314 nucleotides HGI48_RS01350 and HGI48_RS01355 are separated by 103 nucleotides
HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938
_RS01345
HGI48_RS01350: HGI48_RS01350 - rod shape-determining protein MreB, at 300,253 to 301,296
_RS01350
HGI48_RS01355: HGI48_RS01355 - rod shape-determining protein MreC, at 301,400 to 302,512
_RS01355
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 299.304 kb on - strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.375 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.573 kb on - strand, within HGI48_RS01345 at 299.573 kb on - strand at 299.592 kb on + strand, within HGI48_RS01345 at 299.593 kb on - strand at 299.593 kb on - strand, within HGI48_RS01345 at 299.593 kb on - strand, within HGI48_RS01345 at 299.666 kb on + strand at 299.667 kb on - strand, within HGI48_RS01345 at 299.668 kb on + strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.811 kb on + strand at 299.812 kb on - strand at 299.812 kb on - strand at 299.812 kb on - strand at 299.815 kb on + strand at 299.816 kb on - strand at 299.930 kb on + strand at 299.930 kb on + strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.959 kb on - strand at 299.959 kb on - strand at 299.959 kb on - strand at 299.963 kb on + strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 300.034 kb on + strand at 300.034 kb on + strand at 300.035 kb on - strand at 300.035 kb on - strand at 300.035 kb on - strand at 300.157 kb on + strand at 300.200 kb on + strand at 300.200 kb on + strand at 300.200 kb on + strand at 300.205 kb on + strand at 301.295 kb on - strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.376 kb on + strand at 301.377 kb on - strand at 301.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 299,304 - HGI48_RS01345 0.67 -1.5 299,336 + HGI48_RS01345 0.69 -0.6 299,336 + HGI48_RS01345 0.69 +0.3 299,336 + HGI48_RS01345 0.69 -3.0 299,337 - HGI48_RS01345 0.69 +0.0 299,337 - HGI48_RS01345 0.69 -2.0 299,337 - HGI48_RS01345 0.69 -2.2 299,337 - HGI48_RS01345 0.69 -1.0 299,337 - HGI48_RS01345 0.69 -0.5 299,337 - +1.4 299,337 - HGI48_RS01345 0.69 +0.4 299,337 - HGI48_RS01345 0.69 -1.3 299,337 - HGI48_RS01345 0.69 -1.0 299,375 + HGI48_RS01345 0.71 +0.5 299,570 + HGI48_RS01345 0.81 -1.0 299,570 + HGI48_RS01345 0.81 +0.3 299,570 + HGI48_RS01345 0.81 +1.2 299,570 + HGI48_RS01345 0.81 +0.4 299,570 + HGI48_RS01345 0.81 +1.0 299,570 + HGI48_RS01345 0.81 -1.0 299,571 - HGI48_RS01345 0.81 -0.5 299,571 - -0.6 299,571 - HGI48_RS01345 0.81 -1.8 299,571 - HGI48_RS01345 0.81 -0.4 299,571 - HGI48_RS01345 0.81 +0.2 299,571 - +0.4 299,571 - HGI48_RS01345 0.81 -1.1 299,571 - HGI48_RS01345 0.81 -0.8 299,571 - HGI48_RS01345 0.81 -0.6 299,571 - HGI48_RS01345 0.81 +0.2 299,573 - HGI48_RS01345 0.81 +1.3 299,573 - +1.0 299,592 + HGI48_RS01345 0.82 -0.4 299,593 - +0.0 299,593 - HGI48_RS01345 0.82 +0.5 299,593 - HGI48_RS01345 0.82 -0.6 299,666 + -0.6 299,667 - HGI48_RS01345 0.86 +0.0 299,668 + HGI48_RS01345 0.86 -0.3 299,669 - HGI48_RS01345 0.86 -0.6 299,669 - HGI48_RS01345 0.86 +0.2 299,669 - HGI48_RS01345 0.86 -1.2 299,811 + -0.8 299,812 - +0.2 299,812 - +0.2 299,812 - +0.0 299,815 + +0.7 299,816 - -1.0 299,930 + -2.2 299,930 + -1.3 299,931 - -0.8 299,931 - +0.1 299,931 - -1.6 299,931 - -1.0 299,931 - +0.5 299,931 - +0.4 299,931 - -1.8 299,931 - -1.6 299,959 - +1.0 299,959 - +0.2 299,959 - +1.0 299,963 + +0.5 299,964 - -0.8 299,964 - -0.3 299,964 - +1.0 299,964 - +0.7 299,964 - -1.0 300,034 + -2.3 300,034 + -0.4 300,035 - +0.3 300,035 - -0.8 300,035 - +0.3 300,157 + +0.5 300,200 + +1.0 300,200 + +0.3 300,200 + -2.0 300,205 + -0.2 301,295 - -1.6 301,347 + +0.0 301,347 + -1.2 301,347 + +1.3 301,348 - +0.3 301,348 - -0.1 301,348 - -0.8 301,348 - -0.8 301,348 - +0.2 301,348 - -1.0 301,376 + +0.0 301,377 - +1.7 301,389 + -0.2
Or see this region's nucleotide sequence