Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01335 and HGI48_RS01340 are separated by 193 nucleotides HGI48_RS01340 and HGI48_RS01345 are separated by 152 nucleotides
HGI48_RS01335: HGI48_RS01335 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 295,658 to 296,659
_RS01335
HGI48_RS01340: HGI48_RS01340 - oxidoreductase, at 296,853 to 297,839
_RS01340
HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938
_RS01345
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.857 kb on - strand at 295.867 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand at 295.912 kb on + strand at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand at 295.913 kb on - strand, within HGI48_RS01335 at 295.922 kb on - strand, within HGI48_RS01335 at 295.929 kb on + strand, within HGI48_RS01335 at 295.989 kb on + strand, within HGI48_RS01335 at 295.991 kb on + strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.052 kb on + strand, within HGI48_RS01335 at 296.052 kb on + strand, within HGI48_RS01335 at 296.059 kb on - strand, within HGI48_RS01335 at 296.059 kb on - strand, within HGI48_RS01335 at 296.137 kb on - strand, within HGI48_RS01335 at 296.137 kb on - strand at 296.169 kb on - strand, within HGI48_RS01335 at 296.239 kb on - strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.342 kb on - strand at 296.403 kb on + strand, within HGI48_RS01335 at 296.708 kb on + strand at 296.708 kb on + strand at 296.708 kb on + strand at 296.708 kb on + strand at 296.709 kb on - strand at 296.709 kb on - strand at 296.709 kb on - strand at 296.745 kb on + strand at 296.745 kb on + strand at 296.745 kb on + strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.758 kb on - strand at 296.758 kb on - strand at 296.758 kb on - strand at 296.795 kb on - strand at 296.795 kb on - strand at 296.797 kb on + strand at 296.797 kb on + strand at 296.797 kb on + strand at 296.798 kb on - strand at 296.800 kb on + strand at 296.801 kb on - strand at 296.806 kb on + strand at 296.965 kb on + strand, within HGI48_RS01340 at 296.966 kb on - strand, within HGI48_RS01340 at 296.966 kb on - strand, within HGI48_RS01340 at 297.057 kb on + strand, within HGI48_RS01340 at 297.057 kb on + strand at 297.057 kb on + strand, within HGI48_RS01340 at 297.057 kb on + strand at 297.058 kb on - strand at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.071 kb on + strand, within HGI48_RS01340 at 297.071 kb on + strand, within HGI48_RS01340 at 297.283 kb on + strand at 297.283 kb on + strand at 297.693 kb on - strand, within HGI48_RS01340 at 297.698 kb on + strand, within HGI48_RS01340 at 297.702 kb on - strand, within HGI48_RS01340 at 297.702 kb on - strand, within HGI48_RS01340 at 297.716 kb on + strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand at 297.718 kb on + strand at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.765 kb on + strand at 297.765 kb on + strand at 297.766 kb on - strand at 297.826 kb on - strand at 297.829 kb on - strand at 297.840 kb on - strand at 297.867 kb on + strand at 297.868 kb on - strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.874 kb on - strand at 297.874 kb on - strand at 297.874 kb on - strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.883 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.891 kb on + strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.907 kb on + strand at 297.908 kb on - strand at 297.919 kb on + strand at 298.017 kb on + strand at 298.053 kb on + strand at 298.053 kb on + strand at 298.053 kb on + strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.090 kb on + strand at 298.090 kb on + strand at 298.091 kb on - strand at 298.091 kb on - strand at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand at 298.250 kb on + strand, within HGI48_RS01345 at 298.251 kb on - strand, within HGI48_RS01345 at 298.251 kb on - strand, within HGI48_RS01345 at 298.254 kb on + strand, within HGI48_RS01345 at 298.254 kb on + strand, within HGI48_RS01345 at 298.255 kb on - strand at 298.255 kb on - strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.258 kb on - strand, within HGI48_RS01345 at 298.258 kb on - strand, within HGI48_RS01345 at 298.258 kb on - strand at 298.258 kb on - strand, within HGI48_RS01345 at 298.305 kb on - strand, within HGI48_RS01345 at 298.361 kb on + strand, within HGI48_RS01345 at 298.362 kb on - strand, within HGI48_RS01345 at 298.362 kb on - strand, within HGI48_RS01345 at 298.383 kb on + strand, within HGI48_RS01345 at 298.384 kb on - strand, within HGI48_RS01345 at 298.392 kb on - strand, within HGI48_RS01345 at 298.521 kb on + strand, within HGI48_RS01345 at 298.652 kb on - strand, within HGI48_RS01345 at 298.694 kb on - strand, within HGI48_RS01345 at 298.818 kb on - strand, within HGI48_RS01345 at 298.838 kb on + strand, within HGI48_RS01345 at 298.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 295,857 - +1.4 295,867 + HGI48_RS01335 0.21 -0.5 295,912 + HGI48_RS01335 0.25 +0.0 295,912 + HGI48_RS01335 0.25 -2.0 295,912 + HGI48_RS01335 0.25 -0.1 295,912 + +0.4 295,912 + +0.0 295,912 + HGI48_RS01335 0.25 -1.0 295,912 + HGI48_RS01335 0.25 -1.5 295,912 + HGI48_RS01335 0.25 +1.6 295,913 - HGI48_RS01335 0.25 +0.8 295,913 - HGI48_RS01335 0.25 -0.8 295,913 - HGI48_RS01335 0.25 -2.0 295,913 - HGI48_RS01335 0.25 -2.2 295,913 - HGI48_RS01335 0.25 -1.3 295,913 - +0.4 295,913 - HGI48_RS01335 0.25 -1.1 295,922 - HGI48_RS01335 0.26 -0.1 295,929 + HGI48_RS01335 0.27 -1.7 295,989 + HGI48_RS01335 0.33 -0.2 295,991 + HGI48_RS01335 0.33 -0.8 296,040 - HGI48_RS01335 0.38 -0.7 296,040 - HGI48_RS01335 0.38 +1.7 296,040 - HGI48_RS01335 0.38 +0.0 296,052 + HGI48_RS01335 0.39 -1.1 296,052 + HGI48_RS01335 0.39 +1.0 296,059 - HGI48_RS01335 0.40 -0.8 296,059 - HGI48_RS01335 0.40 +1.0 296,137 - HGI48_RS01335 0.48 -1.3 296,137 - +1.0 296,169 - HGI48_RS01335 0.51 +0.3 296,239 - HGI48_RS01335 0.58 +0.4 296,341 + HGI48_RS01335 0.68 -0.8 296,341 + HGI48_RS01335 0.68 +0.7 296,341 + HGI48_RS01335 0.68 -1.3 296,342 - +1.0 296,403 + HGI48_RS01335 0.74 -1.0 296,708 + +1.0 296,708 + -1.3 296,708 + +0.2 296,708 + +0.2 296,709 - +0.1 296,709 - -0.6 296,709 - -1.0 296,745 + -0.2 296,745 + +0.2 296,745 + -0.9 296,746 - +0.8 296,746 - +0.5 296,746 - -0.2 296,746 - +1.0 296,746 - +0.3 296,746 - -0.5 296,757 + -1.3 296,757 + +0.0 296,757 + -0.4 296,757 + +0.6 296,757 + +0.4 296,757 + +0.0 296,758 - -0.7 296,758 - +0.7 296,758 - +0.4 296,795 - +0.0 296,795 - +1.2 296,797 + +0.6 296,797 + +0.0 296,797 + -0.1 296,798 - +0.6 296,800 + -1.0 296,801 - -0.7 296,806 + +0.0 296,965 + HGI48_RS01340 0.11 -0.3 296,966 - HGI48_RS01340 0.11 -0.5 296,966 - HGI48_RS01340 0.11 -1.0 297,057 + HGI48_RS01340 0.21 -1.3 297,057 + +0.4 297,057 + HGI48_RS01340 0.21 -0.3 297,057 + +0.0 297,058 - -0.6 297,058 - HGI48_RS01340 0.21 -1.0 297,058 - HGI48_RS01340 0.21 +0.0 297,058 - HGI48_RS01340 0.21 +0.0 297,058 - HGI48_RS01340 0.21 -0.9 297,058 - HGI48_RS01340 0.21 -0.6 297,058 - HGI48_RS01340 0.21 -0.2 297,058 - HGI48_RS01340 0.21 -0.7 297,071 + HGI48_RS01340 0.22 +1.0 297,071 + HGI48_RS01340 0.22 +0.0 297,283 + +0.4 297,283 + +3.0 297,693 - HGI48_RS01340 0.85 -0.4 297,698 + HGI48_RS01340 0.86 -1.0 297,702 - HGI48_RS01340 0.86 -0.5 297,702 - HGI48_RS01340 0.86 -0.0 297,716 + HGI48_RS01340 0.87 -1.0 297,717 - HGI48_RS01340 0.88 +0.1 297,717 - HGI48_RS01340 0.88 -0.3 297,717 - HGI48_RS01340 0.88 -0.7 297,717 - HGI48_RS01340 0.88 +0.0 297,717 - HGI48_RS01340 0.88 -0.3 297,718 + HGI48_RS01340 0.88 +0.7 297,718 + HGI48_RS01340 0.88 -0.2 297,718 + HGI48_RS01340 0.88 -0.8 297,718 + +1.0 297,718 + +0.0 297,718 + HGI48_RS01340 0.88 -0.7 297,718 + HGI48_RS01340 0.88 -0.2 297,719 - HGI48_RS01340 0.88 +0.7 297,719 - HGI48_RS01340 0.88 +1.5 297,719 - HGI48_RS01340 0.88 -0.3 297,719 - HGI48_RS01340 0.88 +0.2 297,765 + +0.4 297,765 + +0.8 297,766 - +0.3 297,826 - +0.2 297,829 - -1.8 297,840 - -1.6 297,867 + -0.2 297,868 - -1.3 297,873 + -0.8 297,873 + +0.4 297,873 + -0.1 297,873 + +2.0 297,874 - -1.0 297,874 - +0.1 297,874 - +0.1 297,882 + -0.8 297,882 + +0.4 297,883 - +1.6 297,890 - +0.0 297,890 - -0.3 297,890 - -0.6 297,890 - +0.5 297,890 - -0.8 297,890 - +0.0 297,891 + -1.0 297,892 - +0.0 297,892 - -1.6 297,892 - +0.3 297,892 - -1.3 297,892 - -0.3 297,892 - -0.5 297,907 + +1.4 297,908 - +0.8 297,919 + +0.6 298,017 + +1.0 298,053 + -0.3 298,053 + -0.1 298,053 + +0.2 298,054 - +0.0 298,054 - -0.3 298,054 - -0.4 298,054 - -0.2 298,088 + -0.6 298,088 + +0.0 298,088 + +0.3 298,088 + -0.4 298,089 - -1.2 298,089 - -0.6 298,089 - -1.0 298,090 + -0.2 298,090 + -1.2 298,091 - +1.9 298,091 - -1.2 298,250 + HGI48_RS01345 0.13 -1.9 298,250 + HGI48_RS01345 0.13 +0.0 298,250 + HGI48_RS01345 0.13 -1.6 298,250 + +1.0 298,250 + HGI48_RS01345 0.13 +0.4 298,251 - HGI48_RS01345 0.13 +0.1 298,251 - HGI48_RS01345 0.13 +0.6 298,254 + HGI48_RS01345 0.13 +0.0 298,254 + HGI48_RS01345 0.13 +0.8 298,255 - +1.0 298,255 - HGI48_RS01345 0.14 -0.8 298,257 + HGI48_RS01345 0.14 +0.3 298,257 + HGI48_RS01345 0.14 +0.4 298,257 + HGI48_RS01345 0.14 -1.2 298,258 - HGI48_RS01345 0.14 -1.6 298,258 - HGI48_RS01345 0.14 -0.1 298,258 - -0.6 298,258 - HGI48_RS01345 0.14 +0.1 298,305 - HGI48_RS01345 0.16 -0.9 298,361 + HGI48_RS01345 0.19 +0.7 298,362 - HGI48_RS01345 0.19 -0.5 298,362 - HGI48_RS01345 0.19 +0.3 298,383 + HGI48_RS01345 0.20 +0.6 298,384 - HGI48_RS01345 0.20 -0.7 298,392 - HGI48_RS01345 0.21 -2.3 298,521 + HGI48_RS01345 0.27 -0.2 298,652 - HGI48_RS01345 0.34 -0.1 298,694 - HGI48_RS01345 0.36 -2.9 298,818 - HGI48_RS01345 0.42 -0.5 298,838 + HGI48_RS01345 0.43 +0.3 298,839 - -0.6
Or see this region's nucleotide sequence