Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01170 and HGI48_RS01175 are separated by 431 nucleotides HGI48_RS01175 and HGI48_RS01180 are separated by 105 nucleotides HGI48_RS01180 and HGI48_RS01185 are separated by 55 nucleotides
HGI48_RS01170: HGI48_RS01170 - phosphomethylpyrimidine synthase ThiC, at 261,682 to 263,553
_RS01170
HGI48_RS01175: HGI48_RS01175 - sigma D regulator, at 263,985 to 264,434
_RS01175
HGI48_RS01180: HGI48_RS01180 - NAD(+) diphosphatase, at 264,540 to 265,313
_RS01180
HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442
_RS01185
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 263.098 kb on - strand, within HGI48_RS01170 at 263.137 kb on - strand, within HGI48_RS01170 at 263.153 kb on + strand, within HGI48_RS01170 at 263.154 kb on - strand, within HGI48_RS01170 at 263.154 kb on - strand, within HGI48_RS01170 at 263.154 kb on - strand, within HGI48_RS01170 at 263.154 kb on - strand, within HGI48_RS01170 at 263.154 kb on - strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.156 kb on + strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.157 kb on - strand, within HGI48_RS01170 at 263.193 kb on + strand, within HGI48_RS01170 at 263.193 kb on + strand, within HGI48_RS01170 at 263.194 kb on - strand, within HGI48_RS01170 at 263.194 kb on - strand, within HGI48_RS01170 at 263.341 kb on + strand, within HGI48_RS01170 at 263.341 kb on + strand, within HGI48_RS01170 at 263.341 kb on + strand, within HGI48_RS01170 at 263.341 kb on + strand, within HGI48_RS01170 at 263.342 kb on - strand, within HGI48_RS01170 at 263.342 kb on - strand, within HGI48_RS01170 at 263.415 kb on - strand at 263.415 kb on - strand at 263.507 kb on + strand at 263.508 kb on - strand at 263.508 kb on - strand at 263.508 kb on - strand at 263.508 kb on - strand at 263.554 kb on - strand at 263.625 kb on + strand at 263.667 kb on + strand at 263.667 kb on + strand at 263.667 kb on + strand at 263.667 kb on + strand at 263.685 kb on + strand at 263.770 kb on + strand at 263.820 kb on + strand at 263.820 kb on + strand at 263.820 kb on + strand at 263.821 kb on - strand at 263.841 kb on + strand at 263.841 kb on + strand at 263.841 kb on + strand at 263.841 kb on + strand at 263.841 kb on + strand at 263.841 kb on + strand at 263.842 kb on - strand at 263.842 kb on - strand at 263.842 kb on - strand at 263.842 kb on - strand at 263.842 kb on - strand at 263.947 kb on + strand at 263.947 kb on + strand at 263.947 kb on + strand at 263.947 kb on + strand at 263.947 kb on + strand at 263.948 kb on - strand at 263.948 kb on - strand at 263.948 kb on - strand at 263.963 kb on + strand at 263.963 kb on + strand at 263.963 kb on + strand at 263.963 kb on + strand at 263.964 kb on - strand at 263.964 kb on - strand at 263.964 kb on - strand at 263.964 kb on - strand at 263.964 kb on - strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.994 kb on + strand at 263.995 kb on - strand at 263.995 kb on - strand at 263.995 kb on - strand at 263.995 kb on - strand at 263.995 kb on - strand at 263.995 kb on - strand at 263.995 kb on - strand at 264.121 kb on + strand, within HGI48_RS01175 at 264.121 kb on + strand, within HGI48_RS01175 at 264.121 kb on + strand, within HGI48_RS01175 at 264.121 kb on + strand, within HGI48_RS01175 at 264.121 kb on + strand, within HGI48_RS01175 at 264.121 kb on + strand, within HGI48_RS01175 at 264.122 kb on - strand, within HGI48_RS01175 at 264.229 kb on + strand at 264.229 kb on + strand, within HGI48_RS01175 at 264.229 kb on + strand, within HGI48_RS01175 at 264.230 kb on - strand, within HGI48_RS01175 at 264.256 kb on + strand, within HGI48_RS01175 at 264.256 kb on + strand, within HGI48_RS01175 at 264.256 kb on + strand, within HGI48_RS01175 at 264.256 kb on + strand at 264.257 kb on - strand at 264.257 kb on - strand, within HGI48_RS01175 at 264.257 kb on - strand, within HGI48_RS01175 at 264.321 kb on - strand, within HGI48_RS01175 at 264.334 kb on + strand, within HGI48_RS01175 at 264.334 kb on + strand, within HGI48_RS01175 at 264.335 kb on - strand, within HGI48_RS01175 at 264.337 kb on + strand at 264.338 kb on - strand, within HGI48_RS01175 at 264.338 kb on - strand at 264.388 kb on + strand, within HGI48_RS01175 at 264.388 kb on + strand, within HGI48_RS01175 at 264.388 kb on + strand, within HGI48_RS01175 at 264.389 kb on - strand, within HGI48_RS01175 at 264.389 kb on - strand, within HGI48_RS01175 at 264.389 kb on - strand, within HGI48_RS01175 at 264.389 kb on - strand, within HGI48_RS01175 at 264.420 kb on + strand at 264.421 kb on - strand at 264.421 kb on - strand at 264.421 kb on - strand at 264.454 kb on + strand at 264.455 kb on - strand at 264.455 kb on - strand at 264.455 kb on - strand at 264.475 kb on + strand at 264.481 kb on + strand at 264.482 kb on - strand at 264.482 kb on - strand at 264.485 kb on + strand at 264.485 kb on + strand at 264.486 kb on - strand at 264.493 kb on + strand at 264.494 kb on - strand at 264.499 kb on + strand at 264.499 kb on + strand at 264.499 kb on + strand at 264.518 kb on + strand at 264.519 kb on - strand at 264.533 kb on - strand at 264.585 kb on + strand at 264.585 kb on + strand at 264.586 kb on - strand at 264.623 kb on - strand at 264.719 kb on + strand, within HGI48_RS01180 at 264.719 kb on + strand at 264.814 kb on - strand, within HGI48_RS01180 at 264.814 kb on - strand, within HGI48_RS01180 at 264.875 kb on - strand, within HGI48_RS01180 at 264.896 kb on + strand, within HGI48_RS01180 at 264.897 kb on - strand, within HGI48_RS01180 at 264.907 kb on - strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand at 264.999 kb on + strand, within HGI48_RS01180 at 264.999 kb on + strand at 265.000 kb on - strand, within HGI48_RS01180 at 265.000 kb on - strand, within HGI48_RS01180 at 265.000 kb on - strand at 265.000 kb on - strand, within HGI48_RS01180 at 265.000 kb on - strand, within HGI48_RS01180 at 265.000 kb on - strand, within HGI48_RS01180 at 265.080 kb on - strand, within HGI48_RS01180 at 265.101 kb on + strand, within HGI48_RS01180 at 265.101 kb on + strand, within HGI48_RS01180 at 265.101 kb on + strand, within HGI48_RS01180 at 265.102 kb on - strand, within HGI48_RS01180 at 265.102 kb on - strand, within HGI48_RS01180 at 265.102 kb on - strand, within HGI48_RS01180 at 265.102 kb on - strand, within HGI48_RS01180 at 265.161 kb on + strand, within HGI48_RS01180 at 265.221 kb on + strand, within HGI48_RS01180 at 265.222 kb on - strand, within HGI48_RS01180 at 265.286 kb on - strand at 265.288 kb on + strand at 265.288 kb on + strand at 265.288 kb on + strand at 265.289 kb on - strand at 265.289 kb on - strand at 265.289 kb on - strand at 265.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 263,098 - HGI48_RS01170 0.76 -0.3 263,137 - HGI48_RS01170 0.78 -0.9 263,153 + HGI48_RS01170 0.79 +0.1 263,154 - HGI48_RS01170 0.79 +0.2 263,154 - HGI48_RS01170 0.79 +0.6 263,154 - HGI48_RS01170 0.79 -0.8 263,154 - HGI48_RS01170 0.79 -1.8 263,154 - HGI48_RS01170 0.79 -0.6 263,156 + HGI48_RS01170 0.79 +0.3 263,156 + HGI48_RS01170 0.79 -0.6 263,156 + HGI48_RS01170 0.79 -0.2 263,156 + HGI48_RS01170 0.79 +0.1 263,156 + HGI48_RS01170 0.79 -1.0 263,156 + HGI48_RS01170 0.79 -0.1 263,157 - HGI48_RS01170 0.79 +1.6 263,157 - HGI48_RS01170 0.79 +0.3 263,157 - HGI48_RS01170 0.79 +0.6 263,157 - HGI48_RS01170 0.79 +0.1 263,157 - HGI48_RS01170 0.79 +0.7 263,157 - HGI48_RS01170 0.79 -0.4 263,193 + HGI48_RS01170 0.81 -0.2 263,193 + HGI48_RS01170 0.81 -0.2 263,194 - HGI48_RS01170 0.81 -1.0 263,194 - HGI48_RS01170 0.81 -0.8 263,341 + HGI48_RS01170 0.89 -0.6 263,341 + HGI48_RS01170 0.89 +0.2 263,341 + HGI48_RS01170 0.89 -1.8 263,341 + HGI48_RS01170 0.89 -0.8 263,342 - HGI48_RS01170 0.89 +0.0 263,342 - HGI48_RS01170 0.89 -1.0 263,415 - +0.6 263,415 - +0.7 263,507 + -0.2 263,508 - +0.3 263,508 - +0.4 263,508 - -1.9 263,508 - -1.0 263,554 - +0.3 263,625 + +0.8 263,667 + -0.7 263,667 + -1.7 263,667 + -0.2 263,667 + -0.6 263,685 + -0.7 263,770 + -0.4 263,820 + -0.9 263,820 + -0.2 263,820 + +0.0 263,821 - -0.3 263,841 + +0.0 263,841 + +1.0 263,841 + -0.0 263,841 + -1.8 263,841 + -0.3 263,841 + +0.6 263,842 - -0.7 263,842 - +0.0 263,842 - +0.7 263,842 - -0.3 263,842 - -1.6 263,947 + -0.5 263,947 + -0.9 263,947 + +0.6 263,947 + -1.0 263,947 + +0.0 263,948 - +2.0 263,948 - +1.8 263,948 - -0.8 263,963 + -0.8 263,963 + -1.6 263,963 + -0.6 263,963 + +0.4 263,964 - -0.3 263,964 - -1.3 263,964 - +0.0 263,964 - +0.5 263,964 - -0.5 263,994 + -0.1 263,994 + +0.0 263,994 + -2.0 263,994 + -1.2 263,994 + -0.2 263,994 + +0.7 263,994 + +0.6 263,995 - -1.3 263,995 - +0.2 263,995 - +0.7 263,995 - +1.0 263,995 - -0.7 263,995 - -0.1 263,995 - -1.6 264,121 + HGI48_RS01175 0.30 -1.2 264,121 + HGI48_RS01175 0.30 -1.6 264,121 + HGI48_RS01175 0.30 -0.8 264,121 + HGI48_RS01175 0.30 +0.0 264,121 + HGI48_RS01175 0.30 +0.3 264,121 + HGI48_RS01175 0.30 +0.3 264,122 - HGI48_RS01175 0.30 +0.2 264,229 + +2.8 264,229 + HGI48_RS01175 0.54 -0.3 264,229 + HGI48_RS01175 0.54 -1.6 264,230 - HGI48_RS01175 0.54 -0.6 264,256 + HGI48_RS01175 0.60 -1.6 264,256 + HGI48_RS01175 0.60 +0.0 264,256 + HGI48_RS01175 0.60 +0.4 264,256 + +2.4 264,257 - -0.6 264,257 - HGI48_RS01175 0.60 +1.0 264,257 - HGI48_RS01175 0.60 +0.3 264,321 - HGI48_RS01175 0.75 -0.1 264,334 + HGI48_RS01175 0.78 -1.2 264,334 + HGI48_RS01175 0.78 -1.3 264,335 - HGI48_RS01175 0.78 -0.4 264,337 + +1.6 264,338 - HGI48_RS01175 0.78 -0.6 264,338 - +0.4 264,388 + HGI48_RS01175 0.90 -0.1 264,388 + HGI48_RS01175 0.90 +0.1 264,388 + HGI48_RS01175 0.90 -0.3 264,389 - HGI48_RS01175 0.90 +1.2 264,389 - HGI48_RS01175 0.90 +1.0 264,389 - HGI48_RS01175 0.90 +1.0 264,389 - HGI48_RS01175 0.90 +0.0 264,420 + +0.1 264,421 - -1.0 264,421 - -1.8 264,421 - +0.0 264,454 + -0.1 264,455 - +1.0 264,455 - -1.0 264,455 - -2.0 264,475 + +0.0 264,481 + +0.3 264,482 - -1.7 264,482 - +0.6 264,485 + +0.4 264,485 + -2.0 264,486 - -0.0 264,493 + -0.2 264,494 - -1.0 264,499 + -0.4 264,499 + +0.0 264,499 + -1.0 264,518 + +0.2 264,519 - -2.3 264,533 - -0.3 264,585 + -1.2 264,585 + +0.2 264,586 - -0.3 264,623 - +2.3 264,719 + HGI48_RS01180 0.23 +1.2 264,719 + +1.4 264,814 - HGI48_RS01180 0.35 -0.2 264,814 - HGI48_RS01180 0.35 -0.2 264,875 - HGI48_RS01180 0.43 +0.3 264,896 + HGI48_RS01180 0.46 +0.5 264,897 - HGI48_RS01180 0.46 -0.2 264,907 - HGI48_RS01180 0.47 -0.6 264,999 + HGI48_RS01180 0.59 -0.2 264,999 + HGI48_RS01180 0.59 -0.4 264,999 + HGI48_RS01180 0.59 -0.6 264,999 + HGI48_RS01180 0.59 +0.2 264,999 + HGI48_RS01180 0.59 -0.3 264,999 + HGI48_RS01180 0.59 +0.5 264,999 + +0.4 264,999 + HGI48_RS01180 0.59 -1.0 264,999 + +0.0 265,000 - HGI48_RS01180 0.59 +1.0 265,000 - HGI48_RS01180 0.59 +1.3 265,000 - +1.0 265,000 - HGI48_RS01180 0.59 -0.2 265,000 - HGI48_RS01180 0.59 -0.3 265,000 - HGI48_RS01180 0.59 -0.3 265,080 - HGI48_RS01180 0.70 +0.8 265,101 + HGI48_RS01180 0.72 -0.6 265,101 + HGI48_RS01180 0.72 +1.2 265,101 + HGI48_RS01180 0.72 +0.8 265,102 - HGI48_RS01180 0.73 -0.2 265,102 - HGI48_RS01180 0.73 -0.1 265,102 - HGI48_RS01180 0.73 -0.3 265,102 - HGI48_RS01180 0.73 +0.8 265,161 + HGI48_RS01180 0.80 -0.6 265,221 + HGI48_RS01180 0.88 -3.0 265,222 - HGI48_RS01180 0.88 -0.7 265,286 - -1.3 265,288 + +0.5 265,288 + -1.1 265,288 + -0.7 265,289 - -1.0 265,289 - +1.0 265,289 - +0.2 265,355 - +0.4
Or see this region's nucleotide sequence