Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01145 and HGI48_RS01150 overlap by 1 nucleotides HGI48_RS01150 and HGI48_RS01155 are separated by 1 nucleotides HGI48_RS01155 and HGI48_RS01160 overlap by 4 nucleotides HGI48_RS01160 and HGI48_RS01165 are separated by 1 nucleotides HGI48_RS01165 and HGI48_RS01170 overlap by 1 nucleotides
HGI48_RS01145: HGI48_RS01145 - 2-iminoacetate synthase ThiH, at 258,170 to 259,315
_RS01145
HGI48_RS01150: HGI48_RS01150 - thiazole synthase, at 259,315 to 260,094
_RS01150
HGI48_RS01155: HGI48_RS01155 - sulfur carrier protein ThiS, at 260,096 to 260,296
_RS01155
HGI48_RS01160: HGI48_RS01160 - HesA/MoeB/ThiF family protein, at 260,293 to 261,045
_RS01160
HGI48_RS01165: HGI48_RS01165 - thiamine phosphate synthase, at 261,047 to 261,682
_RS01165
HGI48_RS01170: HGI48_RS01170 - phosphomethylpyrimidine synthase ThiC, at 261,682 to 263,553
_RS01170
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.784 kb on + strand at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand at 259.784 kb on + strand, within HGI48_RS01150 at 259.784 kb on + strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 259.785 kb on - strand, within HGI48_RS01150 at 260.067 kb on + strand at 260.067 kb on + strand at 260.338 kb on + strand at 260.338 kb on + strand at 260.476 kb on + strand, within HGI48_RS01160 at 260.535 kb on - strand, within HGI48_RS01160 at 260.549 kb on + strand, within HGI48_RS01160 at 260.563 kb on + strand, within HGI48_RS01160 at 260.854 kb on + strand, within HGI48_RS01160 at 260.854 kb on + strand at 260.854 kb on + strand at 260.906 kb on + strand, within HGI48_RS01160 at 260.906 kb on + strand, within HGI48_RS01160 at 260.907 kb on - strand, within HGI48_RS01160 at 260.907 kb on - strand, within HGI48_RS01160 at 261.025 kb on - strand at 261.025 kb on - strand at 261.025 kb on - strand at 261.048 kb on + strand at 261.078 kb on - strand at 261.078 kb on - strand at 261.295 kb on + strand, within HGI48_RS01165 at 261.295 kb on + strand at 261.310 kb on + strand at 261.310 kb on + strand, within HGI48_RS01165 at 261.311 kb on - strand, within HGI48_RS01165 at 261.311 kb on - strand, within HGI48_RS01165 at 261.312 kb on + strand at 261.312 kb on + strand, within HGI48_RS01165 at 261.312 kb on + strand, within HGI48_RS01165 at 261.312 kb on + strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand, within HGI48_RS01165 at 261.313 kb on - strand at 261.313 kb on - strand, within HGI48_RS01165 at 261.377 kb on + strand, within HGI48_RS01165 at 261.437 kb on + strand, within HGI48_RS01165 at 261.437 kb on + strand, within HGI48_RS01165 at 261.437 kb on + strand, within HGI48_RS01165 at 261.438 kb on - strand, within HGI48_RS01165 at 261.438 kb on - strand, within HGI48_RS01165 at 261.445 kb on - strand, within HGI48_RS01165 at 261.474 kb on + strand, within HGI48_RS01165 at 261.475 kb on - strand, within HGI48_RS01165 at 261.572 kb on + strand, within HGI48_RS01165 at 261.572 kb on + strand, within HGI48_RS01165 at 261.572 kb on + strand, within HGI48_RS01165 at 261.573 kb on - strand, within HGI48_RS01165 at 261.573 kb on - strand, within HGI48_RS01165 at 261.584 kb on - strand, within HGI48_RS01165 at 261.719 kb on + strand at 261.720 kb on - strand at 261.720 kb on - strand at 261.721 kb on + strand at 261.721 kb on + strand at 261.721 kb on + strand at 261.721 kb on + strand at 261.721 kb on + strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.722 kb on - strand at 261.809 kb on + strand at 261.828 kb on + strand at 261.829 kb on - strand at 261.878 kb on - strand, within HGI48_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 259,784 + +1.0 259,784 + HGI48_RS01150 0.60 -1.3 259,784 + HGI48_RS01150 0.60 -1.8 259,784 + HGI48_RS01150 0.60 -1.0 259,784 + HGI48_RS01150 0.60 -0.2 259,784 + HGI48_RS01150 0.60 +0.0 259,784 + +1.7 259,784 + HGI48_RS01150 0.60 +0.0 259,784 + HGI48_RS01150 0.60 +1.3 259,785 - HGI48_RS01150 0.60 -0.9 259,785 - HGI48_RS01150 0.60 -1.2 259,785 - HGI48_RS01150 0.60 -0.8 259,785 - HGI48_RS01150 0.60 -0.8 259,785 - HGI48_RS01150 0.60 -3.0 259,785 - HGI48_RS01150 0.60 +1.0 259,785 - HGI48_RS01150 0.60 -1.3 260,067 + -0.6 260,067 + -2.0 260,338 + -1.0 260,338 + +1.0 260,476 + HGI48_RS01160 0.24 -0.6 260,535 - HGI48_RS01160 0.32 +0.0 260,549 + HGI48_RS01160 0.34 +1.0 260,563 + HGI48_RS01160 0.36 -1.0 260,854 + HGI48_RS01160 0.75 +0.4 260,854 + +1.0 260,854 + -0.6 260,906 + HGI48_RS01160 0.81 -0.8 260,906 + HGI48_RS01160 0.81 +0.0 260,907 - HGI48_RS01160 0.82 -0.4 260,907 - HGI48_RS01160 0.82 +0.8 261,025 - -0.8 261,025 - -0.4 261,025 - -0.3 261,048 + -0.6 261,078 - +0.2 261,078 - +0.4 261,295 + HGI48_RS01165 0.39 -1.6 261,295 + +1.0 261,310 + +1.7 261,310 + HGI48_RS01165 0.41 +0.8 261,311 - HGI48_RS01165 0.42 -0.7 261,311 - HGI48_RS01165 0.42 -0.8 261,312 + +0.0 261,312 + HGI48_RS01165 0.42 +1.7 261,312 + HGI48_RS01165 0.42 +0.4 261,312 + HGI48_RS01165 0.42 +0.8 261,313 - HGI48_RS01165 0.42 +0.0 261,313 - HGI48_RS01165 0.42 +0.3 261,313 - HGI48_RS01165 0.42 -0.6 261,313 - HGI48_RS01165 0.42 +1.1 261,313 - HGI48_RS01165 0.42 -1.3 261,313 - HGI48_RS01165 0.42 -2.0 261,313 - HGI48_RS01165 0.42 -0.2 261,313 - -0.6 261,313 - HGI48_RS01165 0.42 +0.5 261,377 + HGI48_RS01165 0.52 -1.8 261,437 + HGI48_RS01165 0.61 +0.0 261,437 + HGI48_RS01165 0.61 -1.0 261,437 + HGI48_RS01165 0.61 +0.0 261,438 - HGI48_RS01165 0.61 -1.0 261,438 - HGI48_RS01165 0.61 -0.9 261,445 - HGI48_RS01165 0.63 -0.6 261,474 + HGI48_RS01165 0.67 +0.3 261,475 - HGI48_RS01165 0.67 -0.4 261,572 + HGI48_RS01165 0.83 +1.8 261,572 + HGI48_RS01165 0.83 +0.4 261,572 + HGI48_RS01165 0.83 -0.1 261,573 - HGI48_RS01165 0.83 -0.1 261,573 - HGI48_RS01165 0.83 -1.2 261,584 - HGI48_RS01165 0.84 +0.1 261,719 + +1.6 261,720 - +0.0 261,720 - +1.0 261,721 + +0.3 261,721 + -2.0 261,721 + -0.1 261,721 + +0.5 261,721 + -0.9 261,722 - -0.6 261,722 - -2.0 261,722 - +0.5 261,722 - -2.1 261,722 - -0.2 261,722 - +1.0 261,722 - -0.8 261,722 - +0.3 261,809 + +0.4 261,828 + -0.6 261,829 - +1.0 261,878 - HGI48_RS01170 0.10 -0.3
Or see this region's nucleotide sequence