Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00995

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00990 and HGI48_RS00995 are separated by 18 nucleotidesHGI48_RS00995 and HGI48_RS01000 are separated by 373 nucleotides HGI48_RS00990: HGI48_RS00990 - Trk system potassium transporter TrkH, at 224,451 to 225,902 _RS00990 HGI48_RS00995: HGI48_RS00995 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 225,921 to 226,460 _RS00995 HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378 _RS01000 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 224.967 kb on - strand, within HGI48_RS00990at 225.015 kb on + strand, within HGI48_RS00990at 225.019 kb on + strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.098 kb on + strand, within HGI48_RS00990at 225.099 kb on - strandat 225.099 kb on - strand, within HGI48_RS00990at 225.165 kb on - strand, within HGI48_RS00990at 225.168 kb on - strand, within HGI48_RS00990at 225.174 kb on - strand, within HGI48_RS00990at 225.203 kb on + strandat 225.204 kb on - strand, within HGI48_RS00990at 225.252 kb on + strand, within HGI48_RS00990at 225.282 kb on - strandat 225.342 kb on + strand, within HGI48_RS00990at 225.393 kb on - strand, within HGI48_RS00990at 225.589 kb on - strand, within HGI48_RS00990at 225.596 kb on + strand, within HGI48_RS00990at 225.596 kb on + strand, within HGI48_RS00990at 225.831 kb on - strandat 225.831 kb on - strandat 225.831 kb on - strandat 225.875 kb on - strandat 225.875 kb on - strandat 225.879 kb on - strandat 225.879 kb on - strandat 225.900 kb on + strandat 225.920 kb on + strandat 225.920 kb on + strandat 226.458 kb on + strandat 226.458 kb on + strandat 226.459 kb on - strandat 226.549 kb on - strandat 226.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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224,967 - HGI48_RS00990 0.36 -0.4
225,015 + HGI48_RS00990 0.39 -0.3
225,019 + HGI48_RS00990 0.39 -1.7
225,020 - HGI48_RS00990 0.39 +0.0
225,020 - HGI48_RS00990 0.39 +0.0
225,020 - HGI48_RS00990 0.39 -1.3
225,098 + HGI48_RS00990 0.45 -0.2
225,099 - +1.4
225,099 - HGI48_RS00990 0.45 +0.4
225,165 - HGI48_RS00990 0.49 -1.8
225,168 - HGI48_RS00990 0.49 +0.3
225,174 - HGI48_RS00990 0.50 -0.6
225,203 + +0.0
225,204 - HGI48_RS00990 0.52 -1.4
225,252 + HGI48_RS00990 0.55 -0.8
225,282 - +0.4
225,342 + HGI48_RS00990 0.61 -2.0
225,393 - HGI48_RS00990 0.65 +0.0
225,589 - HGI48_RS00990 0.78 -1.3
225,596 + HGI48_RS00990 0.79 +0.9
225,596 + HGI48_RS00990 0.79 -0.9
225,831 - +0.4
225,831 - -1.7
225,831 - -1.0
225,875 - -1.6
225,875 - -0.1
225,879 - -1.7
225,879 - +0.0
225,900 + +0.6
225,920 + -0.4
225,920 + -1.3
226,458 + -0.2
226,458 + +0.5
226,459 - -0.7
226,549 - -1.3
226,645 + +2.3

Or see this region's nucleotide sequence