Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00980 and HGI48_RS00985 overlap by 1 nucleotides HGI48_RS00985 and HGI48_RS00990 are separated by 41 nucleotides HGI48_RS00990 and HGI48_RS00995 are separated by 18 nucleotides HGI48_RS00995 and HGI48_RS01000 are separated by 373 nucleotides
HGI48_RS00980: HGI48_RS00980 - Xaa-Pro dipeptidase, at 222,464 to 223,795
_RS00980
HGI48_RS00985: HGI48_RS00985 - IMPACT family protein, at 223,795 to 224,409
_RS00985
HGI48_RS00990: HGI48_RS00990 - Trk system potassium transporter TrkH, at 224,451 to 225,902
_RS00990
HGI48_RS00995: HGI48_RS00995 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 225,921 to 226,460
_RS00995
HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378
_RS01000
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.516 kb on + strand, within HGI48_RS00980 at 223.516 kb on + strand, within HGI48_RS00980 at 223.516 kb on + strand, within HGI48_RS00980 at 223.517 kb on - strand, within HGI48_RS00980 at 223.517 kb on - strand, within HGI48_RS00980 at 223.517 kb on - strand, within HGI48_RS00980 at 223.565 kb on + strand at 223.566 kb on - strand, within HGI48_RS00980 at 223.566 kb on - strand, within HGI48_RS00980 at 223.576 kb on + strand, within HGI48_RS00980 at 223.609 kb on + strand at 223.625 kb on + strand, within HGI48_RS00980 at 223.625 kb on + strand, within HGI48_RS00980 at 223.625 kb on + strand, within HGI48_RS00980 at 223.625 kb on + strand, within HGI48_RS00980 at 223.625 kb on + strand, within HGI48_RS00980 at 223.625 kb on + strand, within HGI48_RS00980 at 223.626 kb on - strand, within HGI48_RS00980 at 223.626 kb on - strand, within HGI48_RS00980 at 223.626 kb on - strand, within HGI48_RS00980 at 223.626 kb on - strand, within HGI48_RS00980 at 223.626 kb on - strand, within HGI48_RS00980 at 223.626 kb on - strand at 223.746 kb on + strand at 223.747 kb on - strand at 223.747 kb on - strand at 223.747 kb on - strand at 223.845 kb on + strand at 223.845 kb on + strand at 223.960 kb on + strand, within HGI48_RS00985 at 223.960 kb on + strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 223.961 kb on - strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.093 kb on + strand, within HGI48_RS00985 at 224.094 kb on - strand, within HGI48_RS00985 at 224.094 kb on - strand, within HGI48_RS00985 at 224.094 kb on - strand, within HGI48_RS00985 at 224.098 kb on + strand, within HGI48_RS00985 at 224.101 kb on + strand, within HGI48_RS00985 at 224.102 kb on - strand, within HGI48_RS00985 at 224.102 kb on - strand, within HGI48_RS00985 at 224.122 kb on - strand, within HGI48_RS00985 at 224.143 kb on + strand, within HGI48_RS00985 at 224.144 kb on - strand, within HGI48_RS00985 at 224.227 kb on + strand, within HGI48_RS00985 at 224.227 kb on + strand, within HGI48_RS00985 at 224.294 kb on - strand, within HGI48_RS00985 at 224.368 kb on - strand at 224.407 kb on + strand at 224.408 kb on - strand at 224.420 kb on + strand at 224.420 kb on + strand at 224.421 kb on - strand at 224.435 kb on + strand at 224.435 kb on + strand at 224.436 kb on - strand at 224.436 kb on - strand at 224.468 kb on - strand at 224.542 kb on - strand at 224.662 kb on + strand, within HGI48_RS00990 at 224.662 kb on + strand, within HGI48_RS00990 at 224.967 kb on - strand, within HGI48_RS00990 at 225.015 kb on + strand, within HGI48_RS00990 at 225.019 kb on + strand, within HGI48_RS00990 at 225.020 kb on - strand, within HGI48_RS00990 at 225.020 kb on - strand, within HGI48_RS00990 at 225.020 kb on - strand, within HGI48_RS00990 at 225.098 kb on + strand, within HGI48_RS00990 at 225.099 kb on - strand at 225.099 kb on - strand, within HGI48_RS00990 at 225.165 kb on - strand, within HGI48_RS00990 at 225.168 kb on - strand, within HGI48_RS00990 at 225.174 kb on - strand, within HGI48_RS00990 at 225.203 kb on + strand at 225.204 kb on - strand, within HGI48_RS00990 at 225.252 kb on + strand, within HGI48_RS00990 at 225.282 kb on - strand at 225.342 kb on + strand, within HGI48_RS00990 at 225.393 kb on - strand, within HGI48_RS00990 at 225.589 kb on - strand, within HGI48_RS00990 at 225.596 kb on + strand, within HGI48_RS00990 at 225.596 kb on + strand, within HGI48_RS00990 at 225.831 kb on - strand at 225.831 kb on - strand at 225.831 kb on - strand at 225.875 kb on - strand at 225.875 kb on - strand at 225.879 kb on - strand at 225.879 kb on - strand at 225.900 kb on + strand at 225.920 kb on + strand at 225.920 kb on + strand at 226.458 kb on + strand at 226.458 kb on + strand at 226.459 kb on - strand at 226.549 kb on - strand at 226.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 223,516 + HGI48_RS00980 0.79 -1.4 223,516 + HGI48_RS00980 0.79 +0.0 223,516 + HGI48_RS00980 0.79 +0.3 223,517 - HGI48_RS00980 0.79 +1.3 223,517 - HGI48_RS00980 0.79 +0.0 223,517 - HGI48_RS00980 0.79 +0.2 223,565 + +1.4 223,566 - HGI48_RS00980 0.83 +0.4 223,566 - HGI48_RS00980 0.83 -1.3 223,576 + HGI48_RS00980 0.83 -1.1 223,609 + -0.6 223,625 + HGI48_RS00980 0.87 -0.1 223,625 + HGI48_RS00980 0.87 +0.8 223,625 + HGI48_RS00980 0.87 -2.2 223,625 + HGI48_RS00980 0.87 -1.0 223,625 + HGI48_RS00980 0.87 -0.1 223,625 + HGI48_RS00980 0.87 -0.4 223,626 - HGI48_RS00980 0.87 +0.3 223,626 - HGI48_RS00980 0.87 -2.7 223,626 - HGI48_RS00980 0.87 -1.0 223,626 - HGI48_RS00980 0.87 -1.1 223,626 - HGI48_RS00980 0.87 -0.7 223,626 - +2.0 223,746 + -0.5 223,747 - -1.8 223,747 - -0.4 223,747 - -0.7 223,845 + -0.2 223,845 + -2.0 223,960 + HGI48_RS00985 0.27 -0.2 223,960 + HGI48_RS00985 0.27 +0.2 223,961 - HGI48_RS00985 0.27 +0.6 223,961 - HGI48_RS00985 0.27 -0.1 223,961 - HGI48_RS00985 0.27 +1.0 223,961 - HGI48_RS00985 0.27 +0.4 223,961 - HGI48_RS00985 0.27 +2.0 223,961 - HGI48_RS00985 0.27 -0.9 224,093 + HGI48_RS00985 0.48 +0.0 224,093 + HGI48_RS00985 0.48 +0.7 224,093 + HGI48_RS00985 0.48 -0.3 224,093 + HGI48_RS00985 0.48 +1.3 224,093 + HGI48_RS00985 0.48 -0.2 224,093 + HGI48_RS00985 0.48 +0.7 224,093 + HGI48_RS00985 0.48 +0.6 224,093 + HGI48_RS00985 0.48 -1.3 224,093 + HGI48_RS00985 0.48 -0.2 224,093 + HGI48_RS00985 0.48 +0.8 224,094 - HGI48_RS00985 0.49 +0.1 224,094 - HGI48_RS00985 0.49 +0.3 224,094 - HGI48_RS00985 0.49 -0.1 224,098 + HGI48_RS00985 0.49 -2.3 224,101 + HGI48_RS00985 0.50 -0.8 224,102 - HGI48_RS00985 0.50 +0.7 224,102 - HGI48_RS00985 0.50 -0.6 224,122 - HGI48_RS00985 0.53 -1.3 224,143 + HGI48_RS00985 0.57 +0.4 224,144 - HGI48_RS00985 0.57 -1.6 224,227 + HGI48_RS00985 0.70 +0.0 224,227 + HGI48_RS00985 0.70 -0.8 224,294 - HGI48_RS00985 0.81 -0.9 224,368 - -1.0 224,407 + -2.0 224,408 - +1.4 224,420 + -0.7 224,420 + +1.0 224,421 - -1.2 224,435 + -1.8 224,435 + -0.7 224,436 - -0.6 224,436 - +0.5 224,468 - +0.0 224,542 - +1.0 224,662 + HGI48_RS00990 0.15 +1.2 224,662 + HGI48_RS00990 0.15 -0.2 224,967 - HGI48_RS00990 0.36 -0.4 225,015 + HGI48_RS00990 0.39 -0.3 225,019 + HGI48_RS00990 0.39 -1.7 225,020 - HGI48_RS00990 0.39 +0.0 225,020 - HGI48_RS00990 0.39 +0.0 225,020 - HGI48_RS00990 0.39 -1.3 225,098 + HGI48_RS00990 0.45 -0.2 225,099 - +1.4 225,099 - HGI48_RS00990 0.45 +0.4 225,165 - HGI48_RS00990 0.49 -1.8 225,168 - HGI48_RS00990 0.49 +0.3 225,174 - HGI48_RS00990 0.50 -0.6 225,203 + +0.0 225,204 - HGI48_RS00990 0.52 -1.4 225,252 + HGI48_RS00990 0.55 -0.8 225,282 - +0.4 225,342 + HGI48_RS00990 0.61 -2.0 225,393 - HGI48_RS00990 0.65 +0.0 225,589 - HGI48_RS00990 0.78 -1.3 225,596 + HGI48_RS00990 0.79 +0.9 225,596 + HGI48_RS00990 0.79 -0.9 225,831 - +0.4 225,831 - -1.7 225,831 - -1.0 225,875 - -1.6 225,875 - -0.1 225,879 - -1.7 225,879 - +0.0 225,900 + +0.6 225,920 + -0.4 225,920 + -1.3 226,458 + -0.2 226,458 + +0.5 226,459 - -0.7 226,549 - -1.3 226,645 + +2.3
Or see this region's nucleotide sequence