Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00955 and HGI48_RS00960 are separated by 36 nucleotides HGI48_RS00960 and HGI48_RS00965 are separated by 25 nucleotides HGI48_RS00965 and HGI48_RS00970 are separated by 52 nucleotides HGI48_RS00970 and HGI48_RS00975 are separated by 12 nucleotides
HGI48_RS00955: HGI48_RS00955 - helix-turn-helix transcriptional regulator, at 217,628 to 217,945
_RS00955
HGI48_RS00960: HGI48_RS00960 - YeeE/YedE family protein, at 217,982 to 218,410
_RS00960
HGI48_RS00965: HGI48_RS00965 - YeeE/YedE family protein, at 218,436 to 218,864
_RS00965
HGI48_RS00970: HGI48_RS00970 - acetyl-CoA C-acyltransferase FadA, at 218,917 to 220,080
_RS00970
HGI48_RS00975: HGI48_RS00975 - fatty acid oxidation complex subunit alpha FadB, at 220,093 to 222,282
_RS00975
Position (kb) 218
219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.922 kb on + strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.943 kb on + strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.993 kb on + strand at 217.994 kb on - strand at 217.994 kb on - strand at 218.032 kb on + strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.241 kb on + strand, within HGI48_RS00960 at 218.446 kb on + strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.534 kb on + strand, within HGI48_RS00965 at 218.538 kb on - strand, within HGI48_RS00965 at 218.538 kb on - strand, within HGI48_RS00965 at 218.766 kb on + strand, within HGI48_RS00965 at 218.767 kb on - strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.921 kb on - strand at 218.932 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 219.010 kb on - strand at 219.010 kb on - strand at 219.205 kb on + strand, within HGI48_RS00970 at 219.513 kb on + strand, within HGI48_RS00970 at 219.920 kb on + strand, within HGI48_RS00970 at 219.921 kb on - strand, within HGI48_RS00970 at 219.924 kb on + strand, within HGI48_RS00970 at 219.924 kb on + strand, within HGI48_RS00970 at 219.924 kb on + strand, within HGI48_RS00970 at 219.924 kb on + strand, within HGI48_RS00970 at 219.925 kb on - strand at 219.967 kb on + strand at 219.967 kb on + strand at 219.967 kb on + strand at 220.094 kb on + strand at 220.095 kb on - strand at 220.193 kb on + strand at 220.194 kb on - strand at 220.194 kb on - strand at 220.194 kb on - strand at 220.235 kb on + strand at 220.236 kb on - strand at 220.236 kb on - strand at 220.254 kb on + strand at 220.304 kb on + strand at 220.305 kb on - strand at 220.401 kb on + strand, within HGI48_RS00975 at 220.455 kb on + strand, within HGI48_RS00975 at 220.483 kb on + strand, within HGI48_RS00975 at 220.483 kb on + strand at 220.483 kb on + strand, within HGI48_RS00975 at 220.484 kb on - strand at 220.515 kb on - strand, within HGI48_RS00975 at 220.561 kb on + strand, within HGI48_RS00975 at 220.561 kb on + strand, within HGI48_RS00975 at 220.562 kb on - strand at 220.562 kb on - strand, within HGI48_RS00975 at 220.562 kb on - strand, within HGI48_RS00975 at 220.562 kb on - strand, within HGI48_RS00975 at 220.667 kb on + strand, within HGI48_RS00975 at 220.667 kb on + strand, within HGI48_RS00975 at 220.668 kb on - strand at 220.767 kb on - strand, within HGI48_RS00975 at 220.767 kb on - strand, within HGI48_RS00975 at 220.767 kb on - strand, within HGI48_RS00975 at 220.767 kb on - strand, within HGI48_RS00975 at 220.911 kb on + strand, within HGI48_RS00975 at 220.912 kb on - strand, within HGI48_RS00975 at 220.912 kb on - strand, within HGI48_RS00975 at 220.912 kb on - strand at 220.912 kb on - strand, within HGI48_RS00975 at 220.975 kb on + strand, within HGI48_RS00975 at 220.975 kb on + strand at 220.976 kb on - strand, within HGI48_RS00975 at 221.065 kb on + strand, within HGI48_RS00975 at 221.065 kb on + strand, within HGI48_RS00975 at 221.065 kb on + strand, within HGI48_RS00975 at 221.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 217,922 + -0.6 217,923 - -0.6 217,923 - -0.7 217,923 - +0.0 217,931 + +0.2 217,931 + -0.4 217,931 + -0.6 217,931 + +1.2 217,931 + +1.0 217,931 + +1.0 217,931 + -0.6 217,932 - -0.3 217,932 - +0.2 217,932 - +0.2 217,932 - -1.6 217,943 + +0.0 217,944 - -0.7 217,944 - +1.2 217,993 + -0.4 217,994 - -1.0 217,994 - -0.3 218,032 + HGI48_RS00960 0.12 -1.2 218,033 - HGI48_RS00960 0.12 +0.2 218,033 - HGI48_RS00960 0.12 -0.1 218,241 + HGI48_RS00960 0.60 -0.8 218,446 + -0.6 218,447 - -0.5 218,447 - -2.4 218,447 - -1.8 218,447 - -1.2 218,447 - +0.0 218,447 - +2.2 218,534 + HGI48_RS00965 0.23 -0.5 218,538 - HGI48_RS00965 0.24 -0.7 218,538 - HGI48_RS00965 0.24 -0.4 218,766 + HGI48_RS00965 0.77 -1.0 218,767 - +0.0 218,823 + -2.1 218,823 + -0.6 218,823 + +0.8 218,823 + +1.6 218,824 - -1.6 218,824 - +0.0 218,824 - -0.3 218,824 - -1.3 218,921 - +2.0 218,932 + -1.6 218,967 + +2.0 218,967 + -0.3 218,967 + +0.0 218,967 + -0.3 218,967 + +1.0 218,967 + +1.4 218,967 + +0.6 218,967 + -0.3 218,968 - -2.0 218,968 - +1.0 218,968 - +0.0 218,968 - -1.0 218,968 - +0.0 218,968 - +0.1 219,010 - -1.3 219,010 - -0.8 219,205 + HGI48_RS00970 0.25 +0.0 219,513 + HGI48_RS00970 0.51 +0.4 219,920 + HGI48_RS00970 0.86 +0.2 219,921 - HGI48_RS00970 0.86 -1.0 219,924 + HGI48_RS00970 0.87 +0.6 219,924 + HGI48_RS00970 0.87 -1.3 219,924 + HGI48_RS00970 0.87 +0.1 219,924 + HGI48_RS00970 0.87 -0.7 219,925 - +1.6 219,967 + -0.7 219,967 + +0.3 219,967 + -0.7 220,094 + -1.1 220,095 - -1.4 220,193 + +1.5 220,194 - +1.0 220,194 - -0.4 220,194 - -0.3 220,235 + -0.3 220,236 - -1.2 220,236 - -0.6 220,254 + +0.0 220,304 + -0.8 220,305 - +0.6 220,401 + HGI48_RS00975 0.14 -1.2 220,455 + HGI48_RS00975 0.17 -2.0 220,483 + HGI48_RS00975 0.18 +0.4 220,483 + +1.4 220,483 + HGI48_RS00975 0.18 -0.1 220,484 - +0.0 220,515 - HGI48_RS00975 0.19 -0.7 220,561 + HGI48_RS00975 0.21 +0.5 220,561 + HGI48_RS00975 0.21 +1.3 220,562 - +1.4 220,562 - HGI48_RS00975 0.21 -0.3 220,562 - HGI48_RS00975 0.21 +1.0 220,562 - HGI48_RS00975 0.21 +0.3 220,667 + HGI48_RS00975 0.26 -0.2 220,667 + HGI48_RS00975 0.26 +0.0 220,668 - +2.3 220,767 - HGI48_RS00975 0.31 +0.5 220,767 - HGI48_RS00975 0.31 +0.0 220,767 - HGI48_RS00975 0.31 +0.2 220,767 - HGI48_RS00975 0.31 +0.0 220,911 + HGI48_RS00975 0.37 -1.6 220,912 - HGI48_RS00975 0.37 -0.7 220,912 - HGI48_RS00975 0.37 +0.5 220,912 - +0.0 220,912 - HGI48_RS00975 0.37 -0.9 220,975 + HGI48_RS00975 0.40 +0.3 220,975 + +1.8 220,976 - HGI48_RS00975 0.40 -1.2 221,065 + HGI48_RS00975 0.44 -0.8 221,065 + HGI48_RS00975 0.44 +0.4 221,065 + HGI48_RS00975 0.44 +0.4 221,066 - +0.4
Or see this region's nucleotide sequence