Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00825 and HGI48_RS00830 are separated by 289 nucleotides HGI48_RS00830 and HGI48_RS00835 are separated by 234 nucleotides
HGI48_RS00825: HGI48_RS00825 - dienelactone hydrolase family protein, at 188,384 to 189,211
_RS00825
HGI48_RS00830: HGI48_RS00830 - uridine phosphorylase, at 189,501 to 190,262
_RS00830
HGI48_RS00835: HGI48_RS00835 - tyrosine-protein phosphatase, at 190,497 to 191,279
_RS00835
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.724 kb on + strand, within HGI48_RS00825 at 188.795 kb on + strand, within HGI48_RS00825 at 188.796 kb on - strand, within HGI48_RS00825 at 188.889 kb on + strand, within HGI48_RS00825 at 188.916 kb on + strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.941 kb on - strand, within HGI48_RS00825 at 188.951 kb on - strand, within HGI48_RS00825 at 188.978 kb on - strand, within HGI48_RS00825 at 188.988 kb on - strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.125 kb on - strand, within HGI48_RS00825 at 189.194 kb on + strand at 189.194 kb on + strand at 189.194 kb on + strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.223 kb on + strand at 189.278 kb on + strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.294 kb on + strand at 189.294 kb on + strand at 189.294 kb on + strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.317 kb on + strand at 189.317 kb on + strand at 189.318 kb on - strand at 189.318 kb on - strand at 189.361 kb on + strand at 189.361 kb on + strand at 189.361 kb on + strand at 189.379 kb on + strand at 189.413 kb on + strand at 189.442 kb on - strand at 189.442 kb on - strand at 189.500 kb on + strand at 189.500 kb on + strand at 189.500 kb on + strand at 189.501 kb on - strand at 189.501 kb on - strand at 189.511 kb on + strand at 189.512 kb on - strand at 189.512 kb on - strand at 189.526 kb on + strand at 189.541 kb on + strand at 189.542 kb on - strand at 189.542 kb on - strand at 189.902 kb on + strand, within HGI48_RS00830 at 189.902 kb on + strand, within HGI48_RS00830 at 189.903 kb on - strand, within HGI48_RS00830 at 190.000 kb on - strand, within HGI48_RS00830 at 190.008 kb on + strand, within HGI48_RS00830 at 190.008 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.078 kb on - strand, within HGI48_RS00830 at 190.112 kb on + strand, within HGI48_RS00830 at 190.112 kb on + strand, within HGI48_RS00830 at 190.113 kb on - strand, within HGI48_RS00830 at 190.113 kb on - strand at 190.113 kb on - strand, within HGI48_RS00830 at 190.317 kb on + strand at 190.317 kb on + strand at 190.318 kb on - strand at 190.318 kb on - strand at 190.374 kb on + strand at 190.374 kb on + strand at 190.374 kb on + strand at 190.375 kb on - strand at 190.375 kb on - strand at 190.379 kb on + strand at 190.379 kb on + strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.395 kb on + strand at 190.399 kb on - strand at 190.399 kb on - strand at 190.399 kb on - strand at 190.431 kb on - strand at 190.437 kb on - strand at 190.453 kb on + strand at 190.454 kb on - strand at 190.468 kb on - strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.480 kb on + strand at 190.480 kb on + strand at 190.480 kb on + strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.484 kb on + strand at 190.484 kb on + strand at 190.485 kb on - strand at 190.514 kb on - strand at 190.514 kb on - strand at 190.753 kb on - strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.038 kb on - strand, within HGI48_RS00835 at 191.177 kb on + strand at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.180 kb on + strand at 191.180 kb on + strand, within HGI48_RS00835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 188,724 + HGI48_RS00825 0.41 +0.4 188,795 + HGI48_RS00825 0.50 -1.0 188,796 - HGI48_RS00825 0.50 +1.0 188,889 + HGI48_RS00825 0.61 -1.3 188,916 + HGI48_RS00825 0.64 -0.3 188,917 - HGI48_RS00825 0.64 -1.0 188,917 - HGI48_RS00825 0.64 -0.3 188,917 - HGI48_RS00825 0.64 -0.4 188,941 - HGI48_RS00825 0.67 -1.0 188,951 - HGI48_RS00825 0.68 +0.3 188,978 - HGI48_RS00825 0.72 +0.7 188,988 - HGI48_RS00825 0.73 +0.0 189,057 + HGI48_RS00825 0.81 +0.0 189,057 + HGI48_RS00825 0.81 -0.3 189,057 + HGI48_RS00825 0.81 +0.2 189,057 + HGI48_RS00825 0.81 -1.2 189,057 + HGI48_RS00825 0.81 -0.2 189,057 + HGI48_RS00825 0.81 +1.0 189,058 - HGI48_RS00825 0.81 -1.1 189,058 - HGI48_RS00825 0.81 +2.7 189,058 - HGI48_RS00825 0.81 +1.0 189,058 - HGI48_RS00825 0.81 -1.6 189,058 - HGI48_RS00825 0.81 +0.1 189,058 - HGI48_RS00825 0.81 -2.7 189,058 - HGI48_RS00825 0.81 +0.6 189,125 - HGI48_RS00825 0.89 -1.8 189,194 + -1.6 189,194 + +0.2 189,194 + -0.4 189,195 - +0.8 189,195 - -1.0 189,195 - -1.6 189,195 - -0.8 189,195 - -1.1 189,223 + -1.2 189,278 + +1.0 189,290 - +0.0 189,290 - +0.8 189,290 - -1.3 189,290 - +0.2 189,294 + -1.4 189,294 + +0.2 189,294 + -1.3 189,295 - +0.4 189,295 - -0.6 189,295 - -0.4 189,295 - -0.6 189,295 - -2.3 189,317 + -0.1 189,317 + +1.0 189,318 - +1.2 189,318 - +0.8 189,361 + -1.0 189,361 + -1.8 189,361 + +0.3 189,379 + -0.1 189,413 + -0.7 189,442 - +1.6 189,442 - -0.6 189,500 + -2.6 189,500 + +0.4 189,500 + -1.1 189,501 - -0.7 189,501 - +0.8 189,511 + -1.6 189,512 - +1.4 189,512 - -1.3 189,526 + -0.1 189,541 + -1.0 189,542 - +0.0 189,542 - +0.3 189,902 + HGI48_RS00830 0.53 +1.0 189,902 + HGI48_RS00830 0.53 +0.7 189,903 - HGI48_RS00830 0.53 -0.6 190,000 - HGI48_RS00830 0.65 -1.9 190,008 + HGI48_RS00830 0.67 -2.8 190,008 + HGI48_RS00830 0.67 +0.7 190,077 + HGI48_RS00830 0.76 +0.0 190,077 + HGI48_RS00830 0.76 -1.0 190,077 + HGI48_RS00830 0.76 -0.8 190,078 - HGI48_RS00830 0.76 -2.0 190,112 + HGI48_RS00830 0.80 -1.6 190,112 + HGI48_RS00830 0.80 -1.2 190,113 - HGI48_RS00830 0.80 +1.4 190,113 - +0.4 190,113 - HGI48_RS00830 0.80 +0.3 190,317 + +0.7 190,317 + -0.6 190,318 - +0.7 190,318 - +1.4 190,374 + +1.3 190,374 + +0.0 190,374 + -0.1 190,375 - +0.3 190,375 - -0.9 190,379 + -1.4 190,379 + -1.8 190,380 - +0.4 190,380 - +0.8 190,380 - -0.7 190,380 - +0.0 190,380 - +0.6 190,395 + +1.0 190,399 - -0.2 190,399 - +0.3 190,399 - -0.4 190,431 - -1.6 190,437 - +0.4 190,453 + +1.0 190,454 - +0.0 190,468 - +0.2 190,478 + +0.6 190,478 + -0.6 190,478 + +0.6 190,478 + +1.7 190,479 - +0.0 190,479 - -1.9 190,479 - -0.6 190,479 - -0.6 190,480 + -0.1 190,480 + -0.8 190,480 + -0.6 190,481 - -0.2 190,481 - -0.4 190,481 - +0.9 190,481 - -0.5 190,481 - +0.3 190,481 - -0.4 190,484 + -0.8 190,484 + +1.0 190,485 - +0.5 190,514 - +0.8 190,514 - -2.0 190,753 - HGI48_RS00835 0.33 -0.8 190,850 + HGI48_RS00835 0.45 -1.0 190,850 + HGI48_RS00835 0.45 -0.2 190,851 - HGI48_RS00835 0.45 -2.0 190,851 - HGI48_RS00835 0.45 -0.3 191,037 + HGI48_RS00835 0.69 -1.0 191,037 + HGI48_RS00835 0.69 -0.5 191,037 + HGI48_RS00835 0.69 +0.2 191,038 - HGI48_RS00835 0.69 -0.7 191,177 + +1.0 191,177 + HGI48_RS00835 0.87 +0.8 191,177 + HGI48_RS00835 0.87 -0.0 191,177 + HGI48_RS00835 0.87 -0.3 191,177 + HGI48_RS00835 0.87 -1.0 191,177 + HGI48_RS00835 0.87 +0.8 191,177 + HGI48_RS00835 0.87 -1.6 191,177 + HGI48_RS00835 0.87 +1.2 191,178 - HGI48_RS00835 0.87 -0.3 191,178 - HGI48_RS00835 0.87 +1.3 191,178 - HGI48_RS00835 0.87 -0.1 191,180 + +1.6 191,180 + HGI48_RS00835 0.87 +0.0
Or see this region's nucleotide sequence