Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00620 and HGI48_RS00625 are separated by 53 nucleotides HGI48_RS00625 and HGI48_RS00630 are separated by 32 nucleotides
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
HGI48_RS00625: HGI48_RS00625 - M55 family metallopeptidase, at 148,380 to 149,201
_RS00625
HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289
_RS00630
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.404 kb on + strand at 147.405 kb on - strand at 147.405 kb on - strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.420 kb on - strand at 147.420 kb on - strand at 147.451 kb on - strand at 147.579 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.651 kb on - strand, within HGI48_RS00620 at 148.074 kb on + strand at 148.122 kb on + strand, within HGI48_RS00620 at 148.360 kb on + strand at 148.381 kb on + strand at 148.381 kb on + strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.403 kb on - strand at 148.454 kb on - strand at 148.547 kb on - strand, within HGI48_RS00625 at 148.547 kb on - strand, within HGI48_RS00625 at 148.577 kb on + strand, within HGI48_RS00625 at 148.578 kb on - strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand at 148.705 kb on + strand, within HGI48_RS00625 at 148.706 kb on - strand, within HGI48_RS00625 at 148.743 kb on + strand, within HGI48_RS00625 at 148.787 kb on - strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 149.113 kb on - strand, within HGI48_RS00625 at 149.120 kb on - strand at 149.120 kb on - strand at 149.190 kb on - strand at 149.193 kb on + strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.460 kb on + strand, within HGI48_RS00630 at 149.461 kb on - strand, within HGI48_RS00630 at 149.921 kb on - strand at 149.951 kb on - strand, within HGI48_RS00630 at 150.052 kb on + strand, within HGI48_RS00630 at 150.085 kb on + strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 147,404 + +1.9 147,405 - +1.0 147,405 - -0.6 147,419 + +0.3 147,419 + +0.7 147,419 + -1.1 147,419 + -0.3 147,420 - -0.1 147,420 - -0.6 147,451 - +0.3 147,579 - HGI48_RS00620 0.23 -0.4 147,592 - HGI48_RS00620 0.24 -0.8 147,592 - HGI48_RS00620 0.24 -1.1 147,651 - HGI48_RS00620 0.30 -1.3 148,074 + +1.0 148,122 + HGI48_RS00620 0.79 +0.0 148,360 + +0.6 148,381 + -1.3 148,381 + -0.4 148,382 - +0.8 148,382 - +0.6 148,382 - +0.0 148,403 - +0.3 148,454 - +0.5 148,547 - HGI48_RS00625 0.20 -1.0 148,547 - HGI48_RS00625 0.20 +0.7 148,577 + HGI48_RS00625 0.24 -0.5 148,578 - HGI48_RS00625 0.24 +1.6 148,687 + HGI48_RS00625 0.37 -0.8 148,687 + HGI48_RS00625 0.37 -0.4 148,687 + HGI48_RS00625 0.37 +0.4 148,687 + HGI48_RS00625 0.37 -0.4 148,687 + HGI48_RS00625 0.37 +0.4 148,688 - HGI48_RS00625 0.37 -1.3 148,688 - HGI48_RS00625 0.37 +0.2 148,688 - -0.6 148,705 + HGI48_RS00625 0.40 +0.6 148,706 - HGI48_RS00625 0.40 +0.2 148,743 + HGI48_RS00625 0.44 -0.3 148,787 - HGI48_RS00625 0.50 -0.7 148,790 + HGI48_RS00625 0.50 +0.1 148,790 + HGI48_RS00625 0.50 +0.3 148,790 + HGI48_RS00625 0.50 -0.2 148,791 - HGI48_RS00625 0.50 -0.8 148,791 - HGI48_RS00625 0.50 +0.3 149,113 - HGI48_RS00625 0.89 -2.0 149,120 - -1.6 149,120 - -0.2 149,190 - +0.0 149,193 + -1.8 149,194 - -1.0 149,194 - +0.4 149,194 - -1.0 149,194 - +0.0 149,194 - +0.5 149,194 - -0.5 149,460 + HGI48_RS00630 0.21 -0.7 149,461 - HGI48_RS00630 0.21 -0.2 149,921 - +2.0 149,951 - HGI48_RS00630 0.68 +0.0 150,052 + HGI48_RS00630 0.77 +1.3 150,085 + HGI48_RS00630 0.81 -1.1 150,086 - HGI48_RS00630 0.81 -0.8 150,086 - HGI48_RS00630 0.81 +0.7 150,086 - HGI48_RS00630 0.81 -1.9 150,151 + HGI48_RS00630 0.87 -1.0 150,151 + HGI48_RS00630 0.87 -1.6 150,151 + HGI48_RS00630 0.87 -2.4 150,151 + HGI48_RS00630 0.87 -0.4 150,151 + HGI48_RS00630 0.87 +0.0
Or see this region's nucleotide sequence