Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
103,976	+				-1.8
104,033	+				-0.3
104,124	-				+0.0
104,124	-				-0.3
104,124	-				+1.9
104,153	-				-0.4
104,153	-				-0.8
104,153	-				+0.0
104,176	+				+1.0
104,176	+				-1.8
104,176	+				-0.6
104,176	+				+0.5
104,177	-				-1.2
104,209	-				-0.2
104,209	-				-0.6
104,209	-				+1.0
104,209	-				+0.4
104,209	-				-2.6
104,212	+				-0.2
104,212	+				-0.4
104,212	+				-0.1
104,212	+				+0.2
104,212	+				-0.1
104,212	+				+0.6
104,212	+				+1.4
104,212	+				-2.4
104,213	-				+1.8
104,213	-				+0.4
104,213	-				-0.1
104,213	-				-1.0
104,213	-				-0.3
104,213	-				+1.1
104,213	-				-0.5
104,214	+				+1.0
104,215	-				+1.3
104,215	-				-0.5
104,215	-				-1.4
104,215	-				-0.2
104,215	-				-0.7
104,254	+				+1.8
104,254	+				-0.3
104,254	+				+0.2
104,263	+				-0.8
104,275	+				-0.8
104,310	+		HGI48_RS00415	0.11	-0.7
104,310	+		HGI48_RS00415	0.11	-1.8
104,310	+		HGI48_RS00415	0.11	+1.2
104,311	-		HGI48_RS00415	0.11	-2.0
104,311	-		HGI48_RS00415	0.11	+0.1
104,311	-		HGI48_RS00415	0.11	-0.2
104,311	-		HGI48_RS00415	0.11	+0.0
104,311	-		HGI48_RS00415	0.11	-0.4
104,311	-		HGI48_RS00415	0.11	+0.6
104,320	+				+1.4
104,320	+		HGI48_RS00415	0.13	-1.4
104,320	+		HGI48_RS00415	0.13	-0.6
104,321	-		HGI48_RS00415	0.13	-1.6
104,321	-		HGI48_RS00415	0.13	-0.6
104,321	-		HGI48_RS00415	0.13	-1.5
104,336	+		HGI48_RS00415	0.15	+0.0
104,336	+		HGI48_RS00415	0.15	-0.4
104,336	+		HGI48_RS00415	0.15	-0.6
104,336	+		HGI48_RS00415	0.15	-0.6
104,337	-		HGI48_RS00415	0.15	-0.1
104,337	-		HGI48_RS00415	0.15	+0.4
104,337	-		HGI48_RS00415	0.15	+0.2
104,337	-		HGI48_RS00415	0.15	+0.2
104,445	+		HGI48_RS00415	0.30	-0.6
104,445	+		HGI48_RS00415	0.30	+0.3
104,445	+		HGI48_RS00415	0.30	+0.6
104,445	+		HGI48_RS00415	0.30	-0.3
104,445	+		HGI48_RS00415	0.30	-0.8
104,445	+		HGI48_RS00415	0.30	-1.0
104,445	+		HGI48_RS00415	0.30	+0.3
104,445	+		HGI48_RS00415	0.30	+0.6
104,445	+		HGI48_RS00415	0.30	-0.6
104,446	-		HGI48_RS00415	0.30	+0.0
104,446	-				+1.0
104,446	-		HGI48_RS00415	0.30	-0.6
104,446	-		HGI48_RS00415	0.30	+0.3
104,500	+		HGI48_RS00415	0.38	-1.8
104,501	-		HGI48_RS00415	0.38	-2.0
104,567	+		HGI48_RS00415	0.47	+0.0
104,567	+		HGI48_RS00415	0.47	-0.0
104,568	-		HGI48_RS00415	0.48	+1.4
104,568	-		HGI48_RS00415	0.48	-1.3
104,789	-		HGI48_RS00415	0.79	-0.6
104,789	-		HGI48_RS00415	0.79	+0.0
104,789	-		HGI48_RS00415	0.79	+0.0
104,789	-		HGI48_RS00415	0.79	-2.6
104,789	-				+2.0
104,789	-		HGI48_RS00415	0.79	-0.1
104,789	-		HGI48_RS00415	0.79	+0.0
104,789	-		HGI48_RS00415	0.79	-0.1
104,950	+				-0.7
104,951	-				+1.0
105,051	+				-1.6
105,051	+				+0.8
105,052	-				+0.2
105,057	+				+0.8
105,058	-				+0.0
105,058	-				-0.2
105,082	-				+0.6
105,180	+				-1.0
105,180	+				-1.1
105,181	-				-1.6
105,181	-				-1.0
105,218	+		HGI48_RS00420	0.11	-0.3
105,219	-		HGI48_RS00420	0.11	+0.6
105,277	-		HGI48_RS00420	0.14	-1.6
105,302	+		HGI48_RS00420	0.15	+1.3
105,302	+		HGI48_RS00420	0.15	-1.3
105,302	+		HGI48_RS00420	0.15	-1.4
105,303	-		HGI48_RS00420	0.15	-1.4
105,303	-		HGI48_RS00420	0.15	-1.6
105,309	-		HGI48_RS00420	0.15	-2.2
105,309	-		HGI48_RS00420	0.15	-1.6
105,309	-				-0.6
105,314	+		HGI48_RS00420	0.15	-0.1
105,315	-		HGI48_RS00420	0.15	-1.2
105,388	+				+0.0
105,397	-		HGI48_RS00420	0.19	-0.8
105,440	+		HGI48_RS00420	0.20	-1.6
105,441	-		HGI48_RS00420	0.20	+0.0
105,485	+		HGI48_RS00420	0.22	-0.1
105,488	+		HGI48_RS00420	0.22	-1.0
105,488	+		HGI48_RS00420	0.22	-1.4
105,539	+		HGI48_RS00420	0.24	-1.0
105,540	-				+1.4
105,540	-		HGI48_RS00420	0.25	-1.1
105,589	-		HGI48_RS00420	0.27	-1.6
105,594	+		HGI48_RS00420	0.27	-1.6
105,595	-		HGI48_RS00420	0.27	-1.1
105,671	+		HGI48_RS00420	0.30	-1.3
105,671	+		HGI48_RS00420	0.30	+1.0
105,676	-		HGI48_RS00420	0.30	-1.3
105,689	+		HGI48_RS00420	0.31	-2.8
105,690	-		HGI48_RS00420	0.31	-1.3
105,754	+		HGI48_RS00420	0.33	+1.3
105,806	+		HGI48_RS00420	0.35	-0.1
105,806	+				+0.0
105,820	+		HGI48_RS00420	0.36	-1.3
105,977	-				+1.0
105,995	-		HGI48_RS00420	0.43	+0.6
106,050	-		HGI48_RS00420	0.45	+0.4
106,050	-		HGI48_RS00420	0.45	-1.3
106,050	-		HGI48_RS00420	0.45	-1.0
106,112	-		HGI48_RS00420	0.48	-0.3
106,250	+		HGI48_RS00420	0.54	-1.3
106,251	-				+2.0
106,254	-		HGI48_RS00420	0.54	+0.8
106,257	-				+0.4
106,257	-		HGI48_RS00420	0.54	+0.0
106,320	+		HGI48_RS00420	0.57	-1.0
106,325	+				+1.0
106,325	+		HGI48_RS00420	0.57	+0.0
106,325	+		HGI48_RS00420	0.57	-1.5
106,326	-		HGI48_RS00420	0.57	-0.2
106,353	-		HGI48_RS00420	0.58	-0.9
106,357	-		HGI48_RS00420	0.58	+0.2
106,415	+		HGI48_RS00420	0.60	-2.1
106,591	+		HGI48_RS00420	0.68	+0.2
106,592	-		HGI48_RS00420	0.68	+1.2
106,592	-		HGI48_RS00420	0.68	-1.1
106,592	-				+1.0
106,685	+		HGI48_RS00420	0.72	-0.2
106,686	-				+1.6
106,701	-		HGI48_RS00420	0.72	+0.3
106,701	-				+1.0
106,715	+		HGI48_RS00420	0.73	+0.0
106,740	+		HGI48_RS00420	0.74	-1.8
106,741	-		HGI48_RS00420	0.74	+0.2
106,768	+				+1.0
106,769	-		HGI48_RS00420	0.75	-0.2
106,811	+		HGI48_RS00420	0.77	+1.0
106,845	-		HGI48_RS00420	0.78	-0.7
106,853	+		HGI48_RS00420	0.78	+0.0
106,853	+		HGI48_RS00420	0.78	-0.6
106,883	-		HGI48_RS00420	0.80	-0.6
106,909	+		HGI48_RS00420	0.81	+0.0
106,909	+		HGI48_RS00420	0.81	+0.0
106,909	+		HGI48_RS00420	0.81	-1.3
106,910	-		HGI48_RS00420	0.81	+0.6
106,911	+		HGI48_RS00420	0.81	-1.3
106,912	-		HGI48_RS00420	0.81	+0.8
106,912	-		HGI48_RS00420	0.81	+0.0
106,912	-		HGI48_RS00420	0.81	-1.7
106,912	-		HGI48_RS00420	0.81	-1.9
106,913	+		HGI48_RS00420	0.81	+1.3
106,913	+		HGI48_RS00420	0.81	+0.5
106,914	-		HGI48_RS00420	0.81	+0.2
106,914	-		HGI48_RS00420	0.81	+0.0
106,914	-		HGI48_RS00420	0.81	+1.3
106,988	+		HGI48_RS00420	0.84	+0.0
107,024	+		HGI48_RS00420	0.85	+0.0
107,025	-		HGI48_RS00420	0.85	-0.6
107,027	+		HGI48_RS00420	0.86	+1.0
107,051	+		HGI48_RS00420	0.87	-0.8
107,056	-		HGI48_RS00420	0.87	+0.4
107,098	+				+2.2
107,098	+		HGI48_RS00420	0.88	-2.4
107,098	+				+0.0
107,099	-		HGI48_RS00420	0.89	-1.8
107,099	-				-0.6
107,113	+		HGI48_RS00420	0.89	-1.0
107,137	+				+0.8
107,137	+				-1.3
107,144	+				-0.7
107,144	+				+0.7
107,144	+				-0.8
107,145	-				-0.5
107,145	-				+0.6
107,145	-				-1.8
107,145	-				-0.4
107,235	-				-1.2
107,262	-				+0.0
107,365	+				+0.5
107,371	-				-0.3
107,377	-				+0.7
107,377	-				-0.3
107,377	-				-0.3
107,419	+				+1.4
107,419	+				+0.4
107,419	+				-0.1
107,420	-				-2.3
107,420	-				+1.0
107,420	-				+0.0
107,420	-				+1.8
107,420	-				-0.3
107,420	-				-0.6
107,420	-				+1.6
107,420	-				+0.1
107,420	-				-1.6
107,420	-				+0.6
107,420	-				+1.8
107,420	-				-0.8
107,420	-				-0.6
107,437	+				-0.4
107,438	-				+1.0
107,438	-				+0.8
107,444	+				+0.5
107,504	-				-1.3
107,543	+				+1.0
107,543	+				+0.7
107,544	-				+0.0
107,544	-				+1.2
107,544	-				+0.6
107,544	-				-0.6
107,544	-				-0.3
107,544	-				+0.8
107,544	-				-1.3
107,593	+				-1.3
107,593	+				+0.3
107,593	+				+0.3
107,593	+				+0.5
107,594	-				-0.7
107,594	-				+0.0
107,594	-				-0.4
107,610	+				+0.8
107,611	-				+0.6
107,691	-		HGI48_RS00425	0.12	+0.4
107,698	-		HGI48_RS00425	0.12	-0.6
107,698	-		HGI48_RS00425	0.12	+1.2
107,698	-		HGI48_RS00425	0.12	-1.1
107,749	+		HGI48_RS00425	0.16	-0.1
107,749	+		HGI48_RS00425	0.16	-0.6
107,750	-		HGI48_RS00425	0.16	-0.8
107,750	-		HGI48_RS00425	0.16	+0.0
107,766	+		HGI48_RS00425	0.17	-0.1
107,767	-				+1.4
107,767	-		HGI48_RS00425	0.17	+0.7
107,767	-		HGI48_RS00425	0.17	+0.3
107,846	+		HGI48_RS00425	0.23	+0.0
107,847	-		HGI48_RS00425	0.23	-0.3
108,335	+		HGI48_RS00425	0.58	+0.0
108,335	+				+1.0
108,336	-		HGI48_RS00425	0.58	+0.3